Wall clock time and date at job start Tue Mar 31 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47282 * 2 1 4 4 O 1.42897 * 109.47210 * 180.02562 * 3 2 1 5 5 C 1.42905 * 114.00074 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.46909 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00319 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99891 * 180.02562 * 6 5 4 9 9 C 1.47352 * 125.51947 * 359.97109 * 8 6 5 10 10 C 1.54947 * 104.89842 * 156.72263 * 9 8 6 11 11 C 1.54792 * 101.45812 * 37.25666 * 10 9 8 12 12 H 1.08998 * 112.84859 * 86.23364 * 11 10 9 13 13 C 1.53514 * 109.68693 * 212.92708 * 11 10 9 14 14 N 1.46653 * 107.22312 * 83.98515 * 13 11 10 15 15 C 1.36935 * 125.28841 * 197.47095 * 14 13 11 16 16 H 1.07994 * 119.99994 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99726 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00042 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99802 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47182 * 89.99784 * 19 17 15 21 21 H 1.48501 * 109.47129 * 209.99722 * 19 17 15 22 22 H 1.48503 * 109.47285 * 329.99701 * 19 17 15 23 23 C 1.46949 * 109.16835 * 17.46624 * 14 13 11 24 24 C 1.47249 * 125.52688 * 179.97438 * 8 6 5 25 25 H 1.09007 * 111.94610 * 56.65103 * 24 8 6 26 26 H 1.09003 * 109.47664 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47306 * 299.99652 * 1 2 3 28 28 H 1.09005 * 109.47225 * 59.99781 * 1 2 3 29 29 H 1.09002 * 109.46679 * 239.99931 * 2 1 3 30 30 H 1.08995 * 109.47189 * 120.00226 * 2 1 3 31 31 H 1.09009 * 109.47079 * 60.00049 * 3 2 1 32 32 H 1.09005 * 109.47170 * 300.00253 * 3 2 1 33 33 H 1.09008 * 109.46929 * 59.99726 * 5 4 3 34 34 H 1.08997 * 109.46748 * 299.99526 * 5 4 3 35 35 H 1.09000 * 110.35482 * 37.87249 * 9 8 6 36 36 H 1.09001 * 110.44286 * 275.62289 * 9 8 6 37 37 H 1.08995 * 111.03188 * 279.21136 * 10 9 8 38 38 H 1.08998 * 111.03240 * 155.29655 * 10 9 8 39 39 H 1.09002 * 109.91762 * 203.43637 * 13 11 10 40 40 H 1.09002 * 109.91557 * 324.53392 * 13 11 10 41 41 H 0.97003 * 120.00235 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.65076 * 238.24258 * 23 14 13 43 43 H 1.09002 * 109.68179 * 117.71071 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0001 6 6 5.5525 2.6288 -0.0001 7 8 6.0741 1.5339 -0.0001 8 7 6.3165 3.7392 0.0008 9 6 5.8138 5.1243 0.0014 10 6 6.9706 5.9677 0.5941 11 6 8.2078 5.2598 -0.0093 12 1 8.4685 5.6337 -0.9994 13 6 9.3786 5.3311 0.9811 14 7 9.2156 4.2223 1.9269 15 6 9.8338 4.1240 3.1448 16 1 10.5041 4.9038 3.4746 17 6 9.5988 3.0218 3.9554 18 7 8.7814 2.0717 3.5537 19 14 10.4427 2.8874 5.6165 20 1 9.5930 3.5216 6.6562 21 1 10.6497 1.4556 5.9520 22 1 11.7562 3.5779 5.5617 23 6 8.2849 3.2369 1.3593 24 6 7.7888 3.7648 0.0014 25 1 8.2061 3.2166 -0.8433 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9563 -0.8900 33 1 3.7289 3.2883 0.8904 34 1 3.7283 3.2893 -0.8896 35 1 4.9259 5.2051 0.6284 36 1 5.5903 5.4486 -1.0149 37 1 6.9790 5.9099 1.6825 38 1 6.9108 7.0034 0.2596 39 1 10.3234 5.2279 0.4472 40 1 9.3559 6.2811 1.5151 41 1 8.6175 1.3014 4.1200 42 1 7.4385 3.1017 2.0328 43 1 8.7982 2.2856 1.2185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187175422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:01 Heat of formation + Delta-G solvation = -73.816816 kcal Electronic energy + Delta-G solvation = -23032.498389 eV Core-core repulsion = 19691.630242 eV Total energy + Delta-G solvation = -3340.868147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.52653 -39.72481 -38.47481 -36.59538 -34.59816 -34.10730 -32.24306 -30.86763 -29.32905 -28.01001 -26.66206 -26.14856 -23.81562 -22.49136 -22.37623 -21.04869 -20.09364 -18.93705 -18.27349 -17.73937 -17.42423 -16.87563 -16.62781 -16.33810 -15.88662 -15.39988 -15.17741 -14.90043 -14.66192 -14.27637 -14.06990 -13.68550 -13.34937 -13.25675 -13.08090 -13.00848 -12.92791 -12.85214 -12.71167 -12.58680 -12.16907 -11.88760 -11.85189 -11.80113 -11.77585 -11.49349 -11.43911 -10.83368 -10.72123 -10.68022 -9.63665 -8.91713 -7.85203 -5.24694 1.41017 1.44660 1.53745 1.58488 1.74438 2.47113 2.87879 3.31309 3.38217 3.67083 3.72658 3.79310 4.00090 4.02979 4.07897 4.17506 4.25570 4.33865 4.40189 4.41272 4.50938 4.54909 4.59682 4.64807 4.73822 4.84753 4.88701 4.97151 5.11948 5.15558 5.19934 5.22045 5.22600 5.34954 5.43889 5.52072 5.57152 5.78091 6.14032 6.17004 6.59729 7.04716 7.21495 7.76707 8.38829 9.23093 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.004537 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.318743 B = 6169.883338 C = 7378.114391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.055 3.945 4 O -0.406 6.406 5 C 0.063 3.937 6 C 0.509 3.491 7 O -0.581 6.581 8 N -0.609 5.609 9 C 0.096 3.904 10 C -0.115 4.115 11 C -0.091 4.091 12 H 0.137 0.863 13 C 0.134 3.866 14 N -0.624 5.624 15 C -0.241 4.241 16 H 0.092 0.908 17 C -0.074 4.074 18 N -0.954 5.954 19 Si 0.982 3.018 20 H -0.282 1.282 21 H -0.301 1.301 22 H -0.262 1.262 23 C 0.201 3.799 24 C 0.118 3.882 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.048 0.952 38 H 0.127 0.873 39 H 0.021 0.979 40 H 0.055 0.945 41 H 0.241 0.759 42 H 0.010 0.990 43 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.013 9.779 -11.210 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.021 4.021 4 O -0.326 6.326 5 C -0.016 4.016 6 C 0.298 3.702 7 O -0.460 6.460 8 N -0.344 5.344 9 C -0.025 4.025 10 C -0.152 4.152 11 C -0.111 4.111 12 H 0.155 0.845 13 C 0.009 3.991 14 N -0.350 5.350 15 C -0.369 4.369 16 H 0.109 0.891 17 C -0.266 4.266 18 N -0.603 5.603 19 Si 0.809 3.191 20 H -0.209 1.209 21 H -0.228 1.228 22 H -0.186 1.186 23 C 0.075 3.925 24 C 0.013 3.987 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.138 0.862 35 H 0.110 0.890 36 H 0.130 0.870 37 H 0.067 0.933 38 H 0.145 0.855 39 H 0.039 0.961 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.028 0.972 43 H -0.004 1.004 Dipole moment (debyes) X Y Z Total from point charges -15.688 8.847 -11.051 21.131 hybrid contribution 0.752 -0.927 1.309 1.771 sum -14.936 7.920 -9.742 19.512 Atomic orbital electron populations 1.21652 0.92363 1.02927 1.02884 1.21509 0.97481 0.95283 1.02354 1.22863 0.78586 0.98773 1.01867 1.87994 1.21911 1.26905 1.95764 1.22209 0.87999 0.86520 1.04915 1.20858 0.90289 0.82991 0.76019 1.90726 1.75865 1.28487 1.50874 1.48636 1.06088 1.07225 1.72443 1.22745 0.97975 0.78416 1.03316 1.22771 0.92112 1.00534 0.99818 1.23033 0.95767 0.91602 1.00663 0.84530 1.21366 0.95940 0.91206 0.90539 1.44550 1.52055 1.21113 1.17312 1.19507 1.20480 1.04386 0.92570 0.89053 1.25811 1.00939 0.96887 1.02967 1.70322 1.40952 1.11013 1.38002 0.85030 0.78565 0.76261 0.79202 1.20902 1.22787 1.18627 1.20840 0.91552 0.89803 0.90340 1.22589 0.80480 0.98818 0.96804 0.91000 0.91530 0.91852 0.91202 0.91960 0.92891 0.91956 0.90699 0.88506 0.86232 0.88986 0.87034 0.93292 0.85454 0.96112 0.92702 0.94947 0.97165 1.00367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.13 -2.63 6.30 30.59 0.19 -2.44 16 3 C 0.05 1.14 5.94 71.98 0.43 1.57 16 4 O -0.41 -13.01 9.88 -129.94 -1.28 -14.29 16 5 C 0.06 1.68 5.42 71.24 0.39 2.07 16 6 C 0.51 20.02 7.64 87.66 0.67 20.69 16 7 O -0.58 -30.60 16.58 16.01 0.27 -30.33 16 8 N -0.61 -21.07 2.83 -784.15 -2.22 -23.29 16 9 C 0.10 2.04 6.66 86.88 0.58 2.62 16 10 C -0.11 -2.74 6.32 31.87 0.20 -2.54 16 11 C -0.09 -2.72 3.97 -9.23 -0.04 -2.76 16 12 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 13 C 0.13 5.24 6.49 86.52 0.56 5.80 16 14 N -0.62 -33.31 3.39 -697.71 -2.36 -35.68 16 15 C -0.24 -13.97 10.25 84.04 0.86 -13.11 16 16 H 0.09 4.93 7.83 -2.91 -0.02 4.91 16 17 C -0.07 -4.45 5.49 84.86 0.47 -3.99 16 18 N -0.95 -63.48 10.27 21.65 0.22 -63.26 16 19 Si 0.98 48.20 29.55 68.60 2.03 50.23 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.20 11.12 4.65 86.60 0.40 11.52 16 24 C 0.12 4.76 3.81 45.93 0.18 4.93 16 25 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.10 2.18 7.85 -2.38 -0.02 2.16 16 34 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 1.60 7.49 -2.39 -0.02 1.58 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.57 7.93 -2.39 -0.02 1.55 16 38 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.05 1.97 7.96 -2.39 -0.02 1.95 16 41 H 0.24 15.85 8.31 -92.71 -0.77 15.08 16 42 H 0.01 0.65 6.90 -2.39 -0.02 0.63 16 43 H -0.02 -1.47 7.53 -2.39 -0.02 -1.49 16 Total: -1.00 -89.57 344.32 3.21 -86.35 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.97 Total: 7.07 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: 5.60 Total: 23.20 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -4.36 Total: -122.22 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.02 Total: -44.63 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -89.57 3.21 -86.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187175422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.534 kcal (2) G-P(sol) polarization free energy of solvation -89.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds