Wall clock time and date at job start Tue Mar 31 2020 02:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50695 * 120.00197 * 2 1 4 4 C 1.53004 * 109.47062 * 239.99703 * 3 2 1 5 5 O 1.42897 * 109.47115 * 359.97438 * 3 2 1 6 6 C 1.53004 * 109.47274 * 119.99914 * 3 2 1 7 7 C 1.50695 * 109.47274 * 180.02562 * 6 3 2 8 8 O 1.21287 * 120.00154 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00480 * 179.97438 * 7 6 3 10 10 C 1.47027 * 125.64345 * 0.02765 * 9 7 6 11 11 C 1.54319 * 107.27034 * 180.79350 * 10 9 7 12 12 C 1.55159 * 102.94353 * 22.19020 * 11 10 9 13 13 H 1.08997 * 111.00583 * 82.57446 * 12 11 10 14 14 N 1.46501 * 111.00303 * 206.38809 * 12 11 10 15 15 C 1.46502 * 120.00059 * 58.54323 * 14 12 11 16 16 C 1.36931 * 119.99844 * 238.54704 * 14 12 11 17 17 H 1.07997 * 120.00356 * 23.29830 * 16 14 12 18 18 C 1.38816 * 120.00047 * 203.30094 * 16 14 12 19 19 N 1.31617 * 119.99862 * 13.97130 * 18 16 14 20 20 Si 1.86796 * 120.00168 * 193.97556 * 18 16 14 21 21 H 1.48500 * 109.47173 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47322 * 119.99606 * 20 18 16 23 23 H 1.48495 * 109.47274 * 239.99867 * 20 18 16 24 24 C 1.47419 * 125.65304 * 179.71230 * 9 7 6 25 25 H 1.08001 * 120.00286 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.99934 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99934 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47320 * 300.00245 * 4 3 2 29 29 H 1.08996 * 109.46950 * 60.00392 * 4 3 2 30 30 H 1.09000 * 109.47013 * 179.97438 * 4 3 2 31 31 H 0.96697 * 114.00417 * 59.99935 * 5 3 2 32 32 H 1.09002 * 109.46919 * 59.99871 * 6 3 2 33 33 H 1.08998 * 109.47023 * 300.00261 * 6 3 2 34 34 H 1.09003 * 109.87800 * 300.20603 * 10 9 7 35 35 H 1.08996 * 109.88347 * 61.21896 * 10 9 7 36 36 H 1.09002 * 110.72180 * 140.55440 * 11 10 9 37 37 H 1.09003 * 110.71597 * 263.64641 * 11 10 9 38 38 H 1.09001 * 109.46907 * 95.16852 * 15 14 12 39 39 H 1.09001 * 109.47115 * 215.16804 * 15 14 12 40 40 H 1.08998 * 109.47223 * 335.16687 * 15 14 12 41 41 H 0.96997 * 120.00212 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.36810 * 274.97456 * 24 9 7 43 43 H 1.09000 * 110.36608 * 37.29926 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9432 1.3860 -1.2492 5 8 1.1349 2.3912 -0.0006 6 6 2.9431 1.3861 1.2493 7 6 3.6962 2.6914 1.2496 8 8 3.5447 3.4792 0.3399 9 7 4.5381 2.9836 2.2607 10 6 4.8152 2.1235 3.4205 11 6 5.8197 2.8754 4.3189 12 6 5.6193 4.3561 3.9006 13 1 4.7660 4.7958 4.4168 14 7 6.8345 5.1384 4.1401 15 6 8.0924 4.7538 3.4950 16 6 6.7947 6.2291 4.9670 17 1 6.0240 6.3086 5.7194 18 6 7.7450 7.2328 4.8384 19 7 8.5077 7.2835 3.7669 20 14 7.9416 8.5113 6.1860 21 1 6.9715 8.2349 7.2758 22 1 9.3235 8.4528 6.7262 23 1 7.6854 9.8630 5.6270 24 6 5.3385 4.2154 2.3837 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 3.6515 0.5575 -1.2492 29 1 2.3165 1.3283 -2.1392 30 1 3.4879 2.3302 -1.2495 31 1 0.5433 2.4034 0.7642 32 1 3.6514 0.5576 1.2493 33 1 2.3165 1.3283 2.1392 34 1 3.8936 1.9358 3.9714 35 1 5.2467 1.1796 3.0874 36 1 5.5751 2.7356 5.3718 37 1 6.8394 2.5487 4.1146 38 1 8.2199 5.3272 2.5767 39 1 8.9240 4.9582 4.1694 40 1 8.0692 3.6900 3.2588 41 1 9.1720 7.9845 3.6771 42 1 6.2736 4.1169 1.8323 43 1 4.7722 5.0735 2.0216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189918538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:16 Heat of formation + Delta-G solvation = -31.758299 kcal Electronic energy + Delta-G solvation = -22913.443642 eV Core-core repulsion = 19574.399289 eV Total energy + Delta-G solvation = -3339.044353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13599 -38.49655 -37.00215 -34.78686 -33.14123 -31.82707 -31.23725 -29.81306 -28.60946 -27.19923 -26.06010 -23.77159 -22.55503 -22.23417 -19.81174 -19.32984 -18.95487 -17.23353 -17.05967 -16.54976 -15.96503 -15.72923 -15.07351 -14.59573 -14.44101 -14.24771 -13.42459 -13.31016 -13.12602 -12.66957 -12.49659 -12.42965 -12.32701 -12.16141 -12.04440 -11.69335 -11.61401 -11.36434 -11.18507 -10.93198 -10.80897 -10.52446 -10.47795 -10.29068 -10.25975 -9.90395 -9.83725 -9.68292 -9.31866 -8.61142 -8.25300 -6.81629 -5.77825 -3.25756 1.94731 2.89763 3.24818 3.35876 3.43264 3.45157 4.14404 4.43819 4.48221 4.61722 4.83228 4.94226 5.00053 5.00673 5.25955 5.31571 5.36870 5.48287 5.54200 5.57160 5.62990 5.78477 5.81764 5.88765 5.97375 6.01362 6.23800 6.30641 6.35433 6.38523 6.49786 6.58601 6.65017 6.76621 6.87316 7.30194 7.60835 7.68295 7.76712 7.87019 8.33434 8.49039 9.16916 9.79438 10.28416 11.26518 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036732 B = 0.003390 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.104772 B = 8256.925604 C = 8351.358230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.176 3.824 4 C -0.148 4.148 5 O -0.537 6.537 6 C -0.160 4.160 7 C 0.523 3.477 8 O -0.523 6.523 9 N -0.617 5.617 10 C 0.105 3.895 11 C -0.154 4.154 12 C 0.173 3.827 13 H 0.077 0.923 14 N -0.584 5.584 15 C 0.159 3.841 16 C -0.262 4.262 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.088 3.912 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.367 0.633 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.042 0.958 40 H 0.002 0.998 41 H 0.253 0.747 42 H 0.066 0.934 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.404 -16.770 -3.276 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.203 4.203 3 C 0.135 3.865 4 C -0.204 4.204 5 O -0.342 6.342 6 C -0.200 4.200 7 C 0.311 3.689 8 O -0.400 6.400 9 N -0.352 5.352 10 C -0.019 4.019 11 C -0.194 4.194 12 C 0.062 3.938 13 H 0.095 0.905 14 N -0.305 5.305 15 C 0.014 3.986 16 C -0.391 4.391 17 H 0.088 0.912 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.736 3.264 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.217 1.217 24 C -0.036 4.036 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.133 0.867 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.214 0.786 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.021 0.979 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.051 -16.067 -4.423 19.996 hybrid contribution -0.044 0.330 1.275 1.318 sum -11.094 -15.737 -3.148 19.510 Atomic orbital electron populations 1.23861 0.96041 1.02341 0.99781 1.23637 0.96752 0.98845 1.01048 1.19865 0.88014 0.83927 0.94718 1.21942 0.98836 1.04485 0.95174 1.86739 1.50004 1.48940 1.48491 1.22357 1.00255 0.97171 1.00264 1.20005 0.79253 0.88285 0.81332 1.90683 1.64336 1.50145 1.34788 1.48602 1.43204 1.21241 1.22187 1.22000 0.98971 0.93798 0.87144 1.23208 0.98793 0.98682 0.98712 1.21455 0.91107 0.89985 0.91241 0.90478 1.43859 1.02649 1.30256 1.53704 1.20810 0.87415 0.92647 0.97710 1.19249 1.13792 0.96840 1.09234 0.91178 1.25067 0.99990 0.97340 0.97009 1.70080 1.24565 1.34200 1.25807 0.86163 0.77605 0.81265 0.81356 1.20245 1.21562 1.21663 1.23051 0.94504 0.85603 1.00456 0.88307 0.87696 0.86704 0.91971 0.92313 0.88562 0.78579 0.88358 0.88998 0.92113 0.92281 0.90669 0.90542 0.94855 0.93961 0.97926 0.93644 0.91562 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 13.93 29.02 0.40 -1.03 16 2 C -0.18 -1.59 8.77 -36.03 -0.32 -1.91 16 3 C 0.18 1.97 0.94 -91.77 -0.09 1.89 16 4 C -0.15 -1.82 8.50 37.16 0.32 -1.51 16 5 O -0.54 -6.92 10.84 -53.49 -0.58 -7.50 16 6 C -0.16 -1.73 4.13 -27.88 -0.12 -1.85 16 7 C 0.52 8.18 7.41 -10.99 -0.08 8.10 16 8 O -0.52 -10.22 13.22 -12.71 -0.17 -10.39 16 9 N -0.62 -9.78 3.33 -170.52 -0.57 -10.35 16 10 C 0.10 1.33 6.49 -3.06 -0.02 1.31 16 11 C -0.15 -2.36 6.49 -24.90 -0.16 -2.52 16 12 C 0.17 3.40 3.54 -65.78 -0.23 3.17 16 13 H 0.08 1.54 7.95 -51.93 -0.41 1.13 16 14 N -0.58 -14.13 2.96 -171.03 -0.51 -14.64 16 15 C 0.16 3.77 7.61 59.85 0.46 4.23 16 16 C -0.26 -7.01 9.60 -15.06 -0.14 -7.16 16 17 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 18 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 19 N -0.90 -26.02 10.78 55.49 0.60 -25.42 16 20 Si 0.91 21.52 29.58 -169.99 -5.03 16.50 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.09 1.71 6.47 -2.53 -0.02 1.69 16 25 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 26 H 0.10 0.83 6.41 -52.48 -0.34 0.49 16 27 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 1.51 5.51 -51.93 -0.29 1.22 16 31 H 0.37 3.43 8.05 45.56 0.37 3.79 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.23 6.38 -51.93 -0.33 0.89 16 38 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 39 H 0.04 1.08 7.39 -51.93 -0.38 0.69 16 40 H 0.00 0.05 6.34 -51.93 -0.33 -0.28 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.07 1.38 7.06 -51.93 -0.37 1.01 16 43 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -32.06 340.71 -7.43 -39.49 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.23 Total: 2.72 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -0.09 Total: 4.46 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.47 Total: -50.41 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.75 Total: -17.89 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.06 -7.43 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189918538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.734 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds