Wall clock time and date at job start Tue Mar 31 2020 02:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99846 * 2 1 4 4 C 1.53003 * 109.47030 * 120.00213 * 3 2 1 5 5 O 1.42898 * 109.47223 * 0.02562 * 3 2 1 6 6 C 1.53007 * 109.47358 * 240.00593 * 3 2 1 7 7 C 1.50692 * 109.46849 * 59.76073 * 6 3 2 8 8 O 1.21278 * 120.00413 * 354.48839 * 7 6 3 9 9 N 1.34781 * 119.99480 * 174.49472 * 7 6 3 10 10 C 1.47016 * 125.65007 * 0.02562 * 9 7 6 11 11 C 1.54329 * 107.39961 * 181.10774 * 10 9 7 12 12 C 1.55143 * 102.94470 * 22.11186 * 11 10 9 13 13 H 1.09002 * 111.00763 * 82.57438 * 12 11 10 14 14 N 1.46504 * 111.00643 * 206.38857 * 12 11 10 15 15 C 1.46492 * 119.99895 * 58.54637 * 14 12 11 16 16 C 1.36939 * 119.99915 * 238.54927 * 14 12 11 17 17 H 1.07999 * 120.00188 * 23.33639 * 16 14 12 18 18 C 1.38812 * 119.99869 * 203.33413 * 16 14 12 19 19 N 1.31625 * 120.00109 * 15.23558 * 18 16 14 20 20 Si 1.86803 * 120.00166 * 195.22736 * 18 16 14 21 21 H 1.48499 * 109.46683 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46802 * 120.00062 * 20 18 16 23 23 H 1.48495 * 109.47152 * 240.00608 * 20 18 16 24 24 C 1.47753 * 125.81939 * 179.97438 * 9 7 6 25 25 H 1.08003 * 119.99757 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00205 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00205 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47249 * 184.06694 * 4 3 2 29 29 H 1.08994 * 109.46943 * 304.06947 * 4 3 2 30 30 H 1.09003 * 109.46493 * 64.07567 * 4 3 2 31 31 H 0.96703 * 114.00296 * 299.99787 * 5 3 2 32 32 H 1.08997 * 109.46766 * 299.76010 * 6 3 2 33 33 H 1.08997 * 109.47057 * 179.76567 * 6 3 2 34 34 H 1.08991 * 109.88330 * 61.61005 * 10 9 7 35 35 H 1.09001 * 109.87952 * 300.59460 * 10 9 7 36 36 H 1.09004 * 110.71766 * 140.48133 * 11 10 9 37 37 H 1.08999 * 110.71586 * 263.57164 * 11 10 9 38 38 H 1.09002 * 109.47320 * 95.26725 * 15 14 12 39 39 H 1.09003 * 109.47163 * 215.26519 * 15 14 12 40 40 H 1.08995 * 109.47598 * 335.26505 * 15 14 12 41 41 H 0.96998 * 120.00059 * 179.97438 * 19 18 16 42 42 H 1.09002 * 110.29095 * 37.01935 * 24 9 7 43 43 H 1.09003 * 110.43057 * 274.70448 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 8 1.1348 2.3912 0.0006 6 6 2.9430 1.3863 -1.2494 7 6 2.0771 1.3006 -2.4796 8 8 0.8884 1.0859 -2.3709 9 7 2.6237 1.4625 -3.7010 10 6 4.0436 1.7262 -3.9761 11 6 4.1993 1.8653 -5.5052 12 6 2.7649 2.2323 -5.9687 13 1 2.5769 3.2994 -5.8498 14 7 2.5371 1.8131 -7.3538 15 6 2.6809 0.4034 -7.7254 16 6 2.1898 2.7389 -8.3011 17 1 2.4395 3.7796 -8.1561 18 6 1.5169 2.3399 -9.4478 19 7 0.9501 1.1530 -9.4988 20 14 1.4155 3.4873 -10.9184 21 1 2.1290 4.7524 -10.6091 22 1 2.0459 2.8391 -12.0962 23 1 -0.0085 3.7823 -11.2187 24 6 1.8991 1.4042 -4.9873 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.4326 2.3593 1.2865 29 1 2.3253 1.2559 2.1377 30 1 3.6982 0.6008 1.2133 31 1 0.5432 2.4034 -0.7642 32 1 3.6541 0.5603 -1.2473 33 1 3.4848 2.3321 -1.2514 34 1 4.6514 0.8965 -3.6155 35 1 4.3505 2.6506 -3.4867 36 1 4.9000 2.6634 -5.7505 37 1 4.5209 0.9223 -5.9474 38 1 1.7050 -0.0813 -7.6968 39 1 3.0919 0.3332 -8.7325 40 1 3.3527 -0.0908 -7.0236 41 1 0.4796 0.8743 -10.2999 42 1 0.9099 1.8504 -4.8845 43 1 1.8172 0.3731 -5.3314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189918540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:19 Heat of formation + Delta-G solvation = -36.168135 kcal Electronic energy + Delta-G solvation = -23061.710170 eV Core-core repulsion = 19722.474592 eV Total energy + Delta-G solvation = -3339.235578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25331 -38.45904 -36.87383 -34.82745 -32.97581 -31.92645 -31.12551 -29.79768 -28.80155 -27.27580 -26.08590 -23.68024 -22.41566 -22.25843 -19.74900 -19.35356 -18.99614 -17.18558 -17.08463 -16.59786 -16.07875 -15.73171 -15.18137 -14.51304 -14.23583 -14.10121 -13.43282 -13.29299 -12.98592 -12.85117 -12.56489 -12.49879 -12.31219 -12.23063 -12.04466 -11.85991 -11.70284 -11.51765 -11.02887 -10.96722 -10.82582 -10.55919 -10.51925 -10.29466 -10.14000 -9.92781 -9.88747 -9.81228 -9.02320 -8.63610 -8.35096 -6.84491 -5.80566 -3.28337 2.42399 2.77515 3.17418 3.34291 3.41993 3.43897 4.20026 4.42543 4.53469 4.67635 4.73949 4.96106 5.14504 5.18602 5.28471 5.32952 5.36653 5.41897 5.48537 5.58195 5.66347 5.68052 5.77426 5.86007 5.96053 5.97640 6.05274 6.26610 6.34092 6.48109 6.58476 6.67064 6.72173 6.83265 6.87479 7.25981 7.63884 7.65470 7.74521 7.80962 8.29743 8.34358 9.14006 9.76719 10.25582 11.23753 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032513 B = 0.003614 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.979326 B = 7744.989642 C = 7993.720578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.190 4.190 3 C 0.177 3.823 4 C -0.133 4.133 5 O -0.563 6.563 6 C -0.162 4.162 7 C 0.524 3.476 8 O -0.544 6.544 9 N -0.613 5.613 10 C 0.103 3.897 11 C -0.154 4.154 12 C 0.173 3.827 13 H 0.078 0.922 14 N -0.584 5.584 15 C 0.158 3.842 16 C -0.263 4.263 17 H 0.071 0.929 18 C 0.006 3.994 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.087 3.913 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.387 0.613 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.041 0.959 40 H 0.003 0.997 41 H 0.253 0.747 42 H 0.072 0.928 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.166 -1.303 17.215 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.209 4.209 3 C 0.136 3.864 4 C -0.190 4.190 5 O -0.373 6.373 6 C -0.203 4.203 7 C 0.313 3.687 8 O -0.423 6.423 9 N -0.346 5.346 10 C -0.021 4.021 11 C -0.194 4.194 12 C 0.062 3.938 13 H 0.096 0.904 14 N -0.304 5.304 15 C 0.013 3.987 16 C -0.393 4.393 17 H 0.088 0.912 18 C -0.193 4.193 19 N -0.545 5.545 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.216 1.216 24 C -0.037 4.037 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.239 0.761 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.021 0.979 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.704 -1.372 17.692 18.969 hybrid contribution -0.296 0.179 -1.543 1.581 sum 6.408 -1.193 16.148 17.415 Atomic orbital electron populations 1.23608 0.95978 1.01633 0.97321 1.23194 0.96823 0.97670 1.03184 1.19803 0.88137 0.85343 0.93120 1.21697 0.98694 1.02483 0.96173 1.86404 1.50982 1.48803 1.51133 1.22412 0.99664 1.04902 0.93288 1.20210 0.88409 0.76608 0.83449 1.90658 1.15911 1.49786 1.85944 1.48671 1.10101 1.69680 1.06185 1.22030 0.81970 1.00021 0.98045 1.23212 1.01184 1.02889 0.92103 1.21449 0.90514 0.97025 0.84818 0.90413 1.43863 1.79446 1.05255 1.01829 1.20806 0.97775 0.83515 0.96565 1.19247 1.31442 0.90434 0.98127 0.91154 1.25057 0.97272 0.97124 0.99868 1.70087 1.36590 1.20009 1.27853 0.86174 0.77386 0.80148 0.82750 1.20212 1.21537 1.21650 1.23147 0.97234 1.01721 0.81558 0.88971 0.88107 0.87525 0.91660 0.91582 0.91124 0.76071 0.88219 0.88348 0.92165 0.91846 0.90565 0.90531 0.94837 0.94032 0.97861 0.93632 0.90902 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 12.59 29.01 0.37 -1.52 16 2 C -0.19 -2.30 7.46 -36.03 -0.27 -2.57 16 3 C 0.18 2.04 1.08 -91.77 -0.10 1.94 16 4 C -0.13 -1.18 8.82 37.16 0.33 -0.86 16 5 O -0.56 -7.67 11.92 -51.52 -0.61 -8.28 16 6 C -0.16 -1.79 4.17 -27.88 -0.12 -1.90 16 7 C 0.52 7.85 7.34 -10.99 -0.08 7.77 16 8 O -0.54 -9.61 12.23 -10.73 -0.13 -9.74 16 9 N -0.61 -9.44 3.34 -170.28 -0.57 -10.01 16 10 C 0.10 1.29 6.47 -3.06 -0.02 1.27 16 11 C -0.15 -2.33 6.49 -24.90 -0.16 -2.49 16 12 C 0.17 3.34 3.53 -65.81 -0.23 3.11 16 13 H 0.08 1.54 7.95 -51.93 -0.41 1.12 16 14 N -0.58 -13.96 2.96 -171.06 -0.51 -14.47 16 15 C 0.16 3.72 7.62 59.84 0.46 4.17 16 16 C -0.26 -6.99 9.59 -15.06 -0.14 -7.14 16 17 H 0.07 1.83 7.87 -52.49 -0.41 1.41 16 18 C 0.01 0.16 5.05 -17.43 -0.09 0.08 16 19 N -0.90 -25.80 10.86 55.49 0.60 -25.20 16 20 Si 0.91 21.38 29.58 -169.99 -5.03 16.35 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.09 1.65 6.49 -2.37 -0.02 1.64 16 25 H 0.09 1.06 8.06 -52.48 -0.42 0.64 16 26 H 0.10 1.34 6.41 -52.49 -0.34 1.00 16 27 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.39 5.52 5.81 45.56 0.26 5.78 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 0.96 8.13 -51.93 -0.42 0.54 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.21 6.38 -51.93 -0.33 0.88 16 38 H 0.03 0.87 7.32 -51.93 -0.38 0.49 16 39 H 0.04 1.05 7.43 -51.93 -0.39 0.66 16 40 H 0.00 0.06 6.34 -51.93 -0.33 -0.27 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.07 1.51 8.05 -51.93 -0.42 1.10 16 43 H 0.07 1.37 7.06 -51.93 -0.37 1.01 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -30.24 339.07 -7.68 -37.92 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.47 Total: 4.82 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.08 Total: 3.51 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.47 Total: -49.68 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.75 Total: -18.02 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.24 -7.68 -37.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189918540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.753 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds