Wall clock time and date at job start Tue Mar 31 2020 02:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47261 * 2 1 4 4 C 1.53003 * 109.47156 * 240.00104 * 2 1 3 5 5 C 1.50700 * 109.47331 * 120.00122 * 2 1 3 6 6 C 1.32991 * 119.99978 * 359.97438 * 5 2 1 7 7 C 1.47104 * 119.99958 * 179.97438 * 6 5 2 8 8 O 1.21613 * 120.00035 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99657 * 180.27470 * 7 6 5 10 10 C 1.46505 * 119.99724 * 179.72600 * 9 7 6 11 11 H 1.08991 * 110.88886 * 34.29928 * 10 9 7 12 12 C 1.54914 * 111.00244 * 270.41886 * 10 9 7 13 13 N 1.47469 * 104.81081 * 204.94943 * 12 10 9 14 14 C 1.36931 * 125.62923 * 204.05481 * 13 12 10 15 15 H 1.08005 * 120.00271 * 359.97438 * 14 13 12 16 16 C 1.38815 * 120.00085 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00131 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00233 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47109 * 89.99502 * 18 16 14 20 20 H 1.48504 * 109.47251 * 209.99764 * 18 16 14 21 21 H 1.48501 * 109.46956 * 329.99523 * 18 16 14 22 22 C 1.47019 * 108.72017 * 24.07277 * 13 12 10 23 23 C 1.54325 * 107.27454 * 358.97385 * 22 13 12 24 24 H 1.08999 * 110.71755 * 96.17021 * 23 22 13 25 25 O 1.42898 * 110.87249 * 219.37097 * 23 22 13 26 26 H 1.09002 * 109.46787 * 299.99786 * 1 2 3 27 27 H 1.08991 * 109.46992 * 59.99705 * 1 2 3 28 28 H 1.09003 * 109.46587 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47244 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47269 * 300.00240 * 3 2 1 31 31 H 1.08997 * 109.47440 * 60.00145 * 3 2 1 32 32 H 1.09005 * 109.46932 * 299.99865 * 4 2 1 33 33 H 1.08996 * 109.47248 * 59.99514 * 4 2 1 34 34 H 1.08996 * 109.47200 * 180.02562 * 4 2 1 35 35 H 1.08001 * 120.00300 * 180.02562 * 5 2 1 36 36 H 1.08002 * 120.00252 * 0.02562 * 6 5 2 37 37 H 0.97000 * 120.00483 * 359.73032 * 9 7 6 38 38 H 1.08998 * 110.36983 * 323.75879 * 12 10 9 39 39 H 1.09000 * 110.36647 * 86.08132 * 12 10 9 40 40 H 0.96999 * 120.00521 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.88578 * 239.55729 * 22 13 12 42 42 H 1.08999 * 110.01273 * 118.46818 * 22 13 12 43 43 H 0.96696 * 114.00264 * 293.61407 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1682 -1.2154 2.1061 7 6 1.6586 -1.9094 3.3069 8 8 2.8543 -2.0209 3.4991 9 7 0.7828 -2.4260 4.1915 10 6 1.2712 -3.1224 5.3844 11 1 2.1937 -2.6701 5.7480 12 6 1.4664 -4.6334 5.1042 13 7 1.3460 -5.2802 6.4240 14 6 1.8822 -6.4915 6.7706 15 1 2.4497 -7.0579 6.0470 16 6 1.6954 -6.9923 8.0518 17 7 1.0033 -6.3024 8.9335 18 14 2.4262 -8.6451 8.5244 19 1 3.7926 -8.4443 9.0702 20 1 1.5712 -9.2881 9.5544 21 1 2.4957 -9.5169 7.3243 22 6 0.5549 -4.4095 7.3057 23 6 0.1887 -3.1480 6.4956 24 1 -0.8068 -3.2436 6.0621 25 8 0.2729 -1.9773 7.3106 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 3.0942 -0.8088 1.4016 36 1 0.1064 -1.1168 1.9353 37 1 -0.1709 -2.3368 4.0384 38 1 0.6903 -4.9979 4.4312 39 1 2.4538 -4.8161 4.6802 40 1 0.8725 -6.6524 9.8287 41 1 1.1453 -4.1309 8.1787 42 1 -0.3528 -4.9239 7.6212 43 1 -0.3824 -1.9444 8.0208 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191833285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:12 Heat of formation + Delta-G solvation = -78.540083 kcal Electronic energy + Delta-G solvation = -22308.647352 eV Core-core repulsion = 18967.574389 eV Total energy + Delta-G solvation = -3341.072963 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07827 -39.57395 -38.50233 -36.70240 -35.56529 -33.69248 -32.48022 -30.20139 -28.81626 -28.17012 -28.07642 -26.53704 -24.54639 -22.40629 -21.91869 -21.29907 -19.28445 -19.00021 -18.54000 -18.04288 -17.35381 -16.56772 -16.11210 -15.87403 -15.70539 -15.64201 -14.98809 -14.91422 -14.54424 -14.47352 -14.25006 -13.78404 -13.22218 -13.18327 -13.15283 -13.11615 -12.87107 -12.77658 -12.75015 -12.51196 -12.10540 -11.93205 -11.90694 -11.90047 -11.59203 -11.55952 -11.15685 -10.83445 -10.78592 -10.46474 -10.09408 -8.99407 -7.90621 -5.28210 0.41092 1.44504 1.47123 1.55560 2.10628 2.30984 2.47062 3.10688 3.29931 3.52919 3.58284 3.85402 3.88690 4.02847 4.09515 4.11098 4.20697 4.29923 4.42430 4.47008 4.54608 4.78974 4.79469 4.81554 4.94061 4.97297 5.03720 5.06336 5.16420 5.25587 5.32297 5.34580 5.41099 5.42635 5.45185 5.51556 5.59312 5.64204 6.11336 6.58520 6.85583 7.02699 7.25892 7.66763 8.29471 9.19150 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.003258 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.270821 B = 8591.145440 C = 9157.876866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.046 4.046 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.048 4.048 6 C -0.219 4.219 7 C 0.537 3.463 8 O -0.597 6.597 9 N -0.696 5.696 10 C 0.152 3.848 11 H 0.067 0.933 12 C 0.132 3.868 13 N -0.622 5.622 14 C -0.250 4.250 15 H 0.081 0.919 16 C -0.061 4.061 17 N -0.948 5.948 18 Si 0.982 3.018 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.268 1.268 22 C 0.161 3.839 23 C 0.092 3.908 24 H 0.097 0.903 25 O -0.569 6.569 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.164 0.836 37 H 0.418 0.582 38 H 0.044 0.956 39 H 0.030 0.970 40 H 0.250 0.750 41 H 0.020 0.980 42 H 0.028 0.972 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 14.792 -18.319 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.046 4.046 3 C -0.196 4.196 4 C -0.196 4.196 5 C -0.068 4.068 6 C -0.240 4.240 7 C 0.328 3.672 8 O -0.480 6.480 9 N -0.347 5.347 10 C 0.045 3.955 11 H 0.085 0.915 12 C 0.005 3.995 13 N -0.350 5.350 14 C -0.379 4.379 15 H 0.098 0.902 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.810 3.190 19 H -0.215 1.215 20 H -0.214 1.214 21 H -0.193 1.193 22 C 0.035 3.965 23 C 0.032 3.968 24 H 0.115 0.885 25 O -0.377 6.377 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.182 0.818 37 H 0.256 0.744 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.047 0.953 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.197 14.721 -18.401 24.132 hybrid contribution -0.111 -1.248 1.290 1.798 sum -5.307 13.474 -17.112 22.417 Atomic orbital electron populations 1.22027 0.92709 1.02738 1.03095 1.19838 0.97084 0.95618 0.92025 1.21842 1.01213 0.93674 1.02830 1.21847 1.01215 1.00327 0.96217 1.23903 0.99414 0.90217 0.93311 1.22745 1.02597 1.04376 0.94233 1.19394 0.85539 0.77994 0.84263 1.90772 1.18114 1.61283 1.77826 1.45588 1.10649 1.56316 1.22139 1.21716 0.97167 0.91902 0.84727 0.91483 1.21930 0.98774 0.90544 0.88248 1.44531 1.61988 1.19699 1.08799 1.19452 1.27330 0.94312 0.96792 0.90158 1.25672 1.01063 1.02663 0.96057 1.70126 1.45314 1.39376 1.04820 0.85032 0.77270 0.78930 0.77794 1.21494 1.21442 1.19306 1.21625 0.94464 0.88388 0.91993 1.23142 0.97906 0.85164 0.90585 0.88532 1.86435 1.62182 1.40929 1.48158 0.91733 0.90770 0.91795 0.92690 0.90330 0.92614 0.92688 0.90321 0.92691 0.87810 0.81839 0.74426 0.93875 0.95111 0.94071 0.96195 0.95345 0.75309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 7.13 71.98 0.51 -1.01 16 2 C -0.05 -0.61 0.99 -52.93 -0.05 -0.67 16 3 C -0.14 -1.65 8.46 71.98 0.61 -1.04 16 4 C -0.14 -1.70 8.46 71.98 0.61 -1.09 16 5 C -0.05 -0.99 8.33 24.52 0.20 -0.78 16 6 C -0.22 -4.73 9.00 23.43 0.21 -4.52 16 7 C 0.54 17.09 7.76 86.57 0.67 17.76 16 8 O -0.60 -25.11 15.91 -4.07 -0.06 -25.17 16 9 N -0.70 -20.65 5.21 -439.54 -2.29 -22.94 16 10 C 0.15 5.93 3.09 46.38 0.14 6.07 16 11 H 0.07 3.14 7.63 -2.39 -0.02 3.12 16 12 C 0.13 5.87 6.93 86.85 0.60 6.47 16 13 N -0.62 -33.23 3.40 -691.87 -2.35 -35.58 16 14 C -0.25 -14.52 10.28 84.04 0.86 -13.65 16 15 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 16 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16 17 N -0.95 -56.80 10.31 21.65 0.22 -56.58 16 18 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 C 0.16 7.92 5.15 86.73 0.45 8.37 16 23 C 0.09 3.37 3.96 31.78 0.13 3.50 16 24 H 0.10 2.84 8.00 -2.39 -0.02 2.82 16 25 O -0.57 -19.33 13.40 -148.98 -2.00 -21.33 16 26 H 0.06 0.64 7.50 -2.39 -0.02 0.62 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.65 7.50 -2.39 -0.02 0.63 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.72 8.14 -2.38 -0.02 0.71 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 2.60 7.49 -2.91 -0.02 2.58 16 36 H 0.16 2.36 5.74 -2.91 -0.02 2.34 16 37 H 0.42 8.90 8.52 -92.71 -0.79 8.11 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.02 1.12 7.30 -2.38 -0.02 1.11 16 42 H 0.03 1.49 7.50 -2.39 -0.02 1.48 16 43 H 0.40 9.86 9.12 -74.06 -0.68 9.19 16 Total: -1.00 -76.20 349.85 0.50 -75.70 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -0.46 Total: 21.15 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 5.41 Total: 16.33 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -4.42 Total: -115.10 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -2.06 Total: -46.50 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -76.20 0.50 -75.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191833285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.843 kcal (2) G-P(sol) polarization free energy of solvation -76.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds