Wall clock time and date at job start Tue Mar 31 2020 02:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99954 * 2 1 4 4 H 1.09005 * 109.47146 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.47276 * 240.00206 * 3 2 1 6 6 C 1.53005 * 109.47343 * 64.99706 * 5 3 2 7 7 C 1.52995 * 109.47333 * 119.99460 * 3 2 1 8 8 C 1.50697 * 109.47534 * 295.00641 * 7 3 2 9 9 O 1.21286 * 119.99843 * 359.97438 * 8 7 3 10 10 N 1.34781 * 120.00099 * 180.02562 * 8 7 3 11 11 C 1.46496 * 119.99704 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.64277 * 31.85896 * 11 10 8 13 13 C 1.54316 * 110.87374 * 268.60454 * 11 10 8 14 14 N 1.47020 * 107.27568 * 219.37532 * 13 11 10 15 15 C 1.36938 * 125.65236 * 178.97773 * 14 13 11 16 16 H 1.07998 * 120.00058 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99997 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00091 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99701 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47025 * 59.99937 * 19 17 15 21 21 H 1.48503 * 109.46903 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47537 * 299.99924 * 19 17 15 23 23 C 1.47422 * 108.70191 * 358.94070 * 14 13 11 24 24 C 1.54917 * 104.83074 * 24.12901 * 23 14 13 25 25 H 1.08998 * 111.00524 * 81.06438 * 24 23 14 26 26 O 1.42904 * 111.00348 * 204.91235 * 24 23 14 27 27 H 1.07998 * 120.00685 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.99410 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00685 * 179.97438 * 2 1 3 30 30 H 1.09008 * 109.47365 * 184.99752 * 5 3 2 31 31 H 1.09002 * 109.47210 * 304.99435 * 5 3 2 32 32 H 1.08995 * 109.47097 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.46636 * 300.00152 * 6 5 3 34 34 H 1.09000 * 109.46796 * 60.00062 * 6 5 3 35 35 H 1.09008 * 109.47191 * 175.00183 * 7 3 2 36 36 H 1.08997 * 109.46999 * 55.00789 * 7 3 2 37 37 H 0.97001 * 119.99595 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.88340 * 338.79879 * 13 11 10 39 39 H 1.09005 * 109.88355 * 99.80639 * 13 11 10 40 40 H 0.96998 * 119.99446 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.36873 * 265.28987 * 23 14 13 42 42 H 1.09005 * 110.36491 * 142.96394 * 23 14 13 43 43 H 0.96695 * 114.00130 * 298.55196 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9430 1.3862 -1.2492 6 6 2.0563 1.4307 -2.4953 7 6 2.9430 1.3863 1.2493 8 6 2.0696 1.4301 2.4766 9 8 0.8625 1.3999 2.3632 10 7 2.6300 1.5039 3.7002 11 6 1.7809 1.5470 4.8932 12 1 0.8635 0.9807 4.7326 13 6 1.4611 3.0041 5.2881 14 7 1.5090 3.0793 6.7556 15 6 1.3016 4.2070 7.5042 16 1 1.0811 5.1455 7.0172 17 6 1.3747 4.1440 8.8890 18 7 1.6429 3.0003 9.4825 19 14 1.0925 5.6826 9.9100 20 1 -0.2710 6.2085 9.6463 21 1 1.2244 5.3510 11.3516 22 1 2.0991 6.7112 9.5441 23 6 1.8164 1.7393 7.2878 24 6 2.5469 1.0115 6.1317 25 1 3.5985 1.2957 6.0937 26 8 2.4054 -0.4058 6.2482 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8501 -0.9352 0.0004 30 1 3.5539 2.2880 -1.2056 31 1 3.5906 0.5106 -1.2951 32 1 2.6830 1.4881 -3.3853 33 1 1.4455 0.5290 -2.5389 34 1 1.4088 2.3064 -2.4494 35 1 3.5539 2.2880 1.2056 36 1 3.5905 0.5107 1.2952 37 1 3.5954 1.5284 3.7907 38 1 2.2036 3.6762 4.8580 39 1 0.4666 3.2747 4.9330 40 1 1.6937 2.9563 10.4501 41 1 0.8972 1.2137 7.5462 42 1 2.4675 1.8172 8.1585 43 1 2.7841 -0.7736 7.0583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195554892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:32 Heat of formation + Delta-G solvation = -50.768939 kcal Electronic energy + Delta-G solvation = -22606.166973 eV Core-core repulsion = 19266.298257 eV Total energy + Delta-G solvation = -3339.868716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.80331 -38.05307 -36.60117 -35.05293 -33.94368 -31.84993 -31.75198 -30.41141 -28.31892 -26.99166 -25.00540 -24.00286 -21.74873 -20.77941 -20.40495 -19.92508 -19.49382 -17.23876 -16.95015 -16.45048 -15.69297 -15.48087 -14.95230 -14.62858 -14.49277 -14.02670 -13.89461 -13.61167 -13.21921 -13.10501 -12.88541 -12.36587 -12.25014 -12.01680 -11.79360 -11.53318 -11.34554 -11.31644 -11.22772 -11.00933 -10.90776 -10.82865 -10.54365 -10.22205 -9.93723 -9.74372 -9.68316 -9.32302 -9.03946 -8.72902 -8.65697 -6.93296 -5.73412 -3.15830 2.49479 2.94092 3.36986 3.40481 3.42046 3.44703 4.39993 4.62531 4.66089 4.69577 4.82568 5.12207 5.14367 5.29089 5.31777 5.39476 5.41195 5.42820 5.60628 5.65660 5.68533 5.75700 5.77814 5.82287 5.88596 6.00079 6.09572 6.12092 6.19987 6.21711 6.53464 6.67573 6.78126 6.97696 6.98832 7.30335 7.51094 7.68243 7.81576 8.10162 8.24561 8.53711 9.12676 9.73254 10.35911 11.30854 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028589 B = 0.003478 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.166959 B = 8048.224592 C = 8507.524225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.153 4.153 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.134 4.134 8 C 0.510 3.490 9 O -0.533 6.533 10 N -0.718 5.718 11 C 0.142 3.858 12 H 0.100 0.900 13 C 0.130 3.870 14 N -0.600 5.600 15 C -0.224 4.224 16 H 0.080 0.920 17 C -0.011 4.011 18 N -0.925 5.925 19 Si 0.918 3.082 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.129 3.871 24 C 0.066 3.934 25 H 0.061 0.939 26 O -0.567 6.567 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.396 0.604 38 H 0.029 0.971 39 H 0.032 0.968 40 H 0.254 0.746 41 H 0.025 0.975 42 H 0.112 0.888 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.055 -5.822 -17.413 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.063 4.063 4 H 0.100 0.900 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.174 4.174 8 C 0.296 3.704 9 O -0.409 6.409 10 N -0.369 5.369 11 C 0.037 3.963 12 H 0.118 0.882 13 C 0.003 3.997 14 N -0.328 5.328 15 C -0.352 4.352 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.574 5.574 19 Si 0.749 3.251 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.003 3.997 24 C 0.006 3.994 25 H 0.078 0.922 26 O -0.371 6.371 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.230 0.770 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.130 0.870 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.861 -5.703 -17.854 19.363 hybrid contribution 0.575 0.688 1.276 1.559 sum 5.436 -5.015 -16.578 18.153 Atomic orbital electron populations 1.23690 0.95950 1.01286 0.99026 1.22600 0.95987 0.96994 1.01481 1.20147 0.96583 0.97145 0.92418 0.90030 1.21542 0.97858 1.01859 0.94080 1.21759 0.99827 1.02179 0.97065 1.21714 0.98720 1.04122 0.92890 1.20610 0.89274 0.76000 0.84533 1.90707 1.14763 1.48919 1.86503 1.46013 1.09988 1.75070 1.05854 1.21957 0.94567 0.97097 0.82637 0.88217 1.21618 0.98704 0.92721 0.86632 1.44278 1.83400 1.06016 0.99068 1.19068 1.40860 0.86992 0.88242 0.90258 1.24802 1.02006 0.97458 0.96330 1.69727 1.55658 1.23282 1.08687 0.86092 0.78117 0.81769 0.79170 1.21095 1.21506 1.21082 1.22570 0.98421 0.84090 0.94631 1.23648 0.98067 0.80558 0.97133 0.92150 1.86411 1.83821 1.21164 1.45744 0.88604 0.89317 0.88219 0.91853 0.91924 0.93039 0.92409 0.92785 0.88914 0.89081 0.76992 0.95287 0.94998 0.93540 0.95729 0.86998 0.77604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 13.22 29.02 0.38 -1.63 16 2 C -0.15 -1.76 6.76 -36.02 -0.24 -2.00 16 3 C -0.04 -0.46 1.81 -91.78 -0.17 -0.63 16 4 H 0.08 1.00 7.60 -51.93 -0.39 0.60 16 5 C -0.12 -0.94 5.39 -26.73 -0.14 -1.08 16 6 C -0.15 -1.20 9.73 37.16 0.36 -0.84 16 7 C -0.13 -1.39 5.16 -27.89 -0.14 -1.54 16 8 C 0.51 7.66 7.58 -10.98 -0.08 7.57 16 9 O -0.53 -9.96 13.81 5.55 0.08 -9.88 16 10 N -0.72 -10.89 5.11 -52.03 -0.27 -11.16 16 11 C 0.14 2.73 3.05 -66.10 -0.20 2.53 16 12 H 0.10 2.16 7.55 -51.93 -0.39 1.76 16 13 C 0.13 2.86 7.00 -3.07 -0.02 2.84 16 14 N -0.60 -15.42 3.39 -170.07 -0.58 -16.00 16 15 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 18 N -0.93 -26.39 10.09 55.49 0.56 -25.83 16 19 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.13 3.08 5.62 -2.53 -0.01 3.06 16 24 C 0.07 1.26 4.06 -24.58 -0.10 1.16 16 25 H 0.06 1.06 8.01 -51.93 -0.42 0.65 16 26 O -0.57 -9.90 13.47 -35.23 -0.47 -10.37 16 27 H 0.10 1.26 7.83 -52.49 -0.41 0.85 16 28 H 0.09 1.01 8.06 -52.48 -0.42 0.58 16 29 H 0.10 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 4.88 8.56 -40.82 -0.35 4.53 16 38 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.11 2.91 5.88 -51.93 -0.31 2.61 16 43 H 0.38 5.08 9.11 45.56 0.42 5.49 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -32.33 349.24 -7.49 -39.83 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.43 Total: 8.65 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.62 Total: 2.68 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.28 Total: -52.99 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.40 Total: -20.26 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.33 -7.49 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195554892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.942 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds