Wall clock time and date at job start Tue Mar 31 2020 02:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50709 * 119.99954 * 2 1 4 4 H 1.09001 * 109.46459 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46792 * 119.99882 * 3 2 1 6 6 C 1.52998 * 109.47178 * 295.00047 * 5 3 2 7 7 C 1.52995 * 109.46870 * 240.00180 * 3 2 1 8 8 C 1.50697 * 109.47534 * 65.00115 * 7 3 2 9 9 O 1.21286 * 119.99843 * 359.97438 * 8 7 3 10 10 N 1.34781 * 120.00099 * 180.02562 * 8 7 3 11 11 C 1.46496 * 119.99704 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.64277 * 31.85896 * 11 10 8 13 13 C 1.54316 * 110.87374 * 268.60454 * 11 10 8 14 14 N 1.47020 * 107.27568 * 219.37532 * 13 11 10 15 15 C 1.36938 * 125.65236 * 178.97773 * 14 13 11 16 16 H 1.07998 * 120.00058 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99997 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00091 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99701 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47025 * 59.99937 * 19 17 15 21 21 H 1.48503 * 109.46903 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47537 * 299.99924 * 19 17 15 23 23 C 1.47422 * 108.70191 * 358.94070 * 14 13 11 24 24 C 1.54917 * 104.83074 * 24.12901 * 23 14 13 25 25 H 1.08998 * 111.00524 * 81.06438 * 24 23 14 26 26 O 1.42904 * 111.00348 * 204.91235 * 24 23 14 27 27 H 1.07996 * 119.99959 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99439 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.00298 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47195 * 55.00159 * 5 3 2 31 31 H 1.09000 * 109.46558 * 175.00306 * 5 3 2 32 32 H 1.08999 * 109.47149 * 300.00140 * 6 5 3 33 33 H 1.08993 * 109.47083 * 60.00280 * 6 5 3 34 34 H 1.08998 * 109.47145 * 180.02562 * 6 5 3 35 35 H 1.09008 * 109.47191 * 304.99657 * 7 3 2 36 36 H 1.08997 * 109.46999 * 185.00263 * 7 3 2 37 37 H 0.97001 * 119.99595 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.88340 * 338.79879 * 13 11 10 39 39 H 1.09005 * 109.88355 * 99.80639 * 13 11 10 40 40 H 0.96998 * 119.99446 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.36873 * 265.28987 * 23 14 13 42 42 H 1.09005 * 110.36491 * 142.96394 * 23 14 13 43 43 H 0.96695 * 114.00130 * 298.55196 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2493 6 6 2.0564 1.4307 2.4953 7 6 2.9431 1.3862 -1.2492 8 6 2.0698 1.4301 -2.4766 9 8 0.8626 1.3991 -2.3633 10 7 2.6302 1.5027 -3.7002 11 6 1.7811 1.5449 -4.8933 12 1 0.8415 2.0540 -4.6785 13 6 1.5207 0.1229 -5.4333 14 7 1.5686 0.1976 -6.9008 15 6 1.4062 -0.8567 -7.7594 16 1 1.2255 -1.8476 -7.3697 17 6 1.4739 -0.6519 -9.1307 18 7 1.6936 0.5557 -9.6057 19 14 1.2530 -2.0904 -10.3018 20 1 -0.0872 -2.6957 -10.0951 21 1 1.3682 -1.6105 -11.7024 22 1 2.3018 -3.1083 -10.0390 23 6 1.8196 1.5958 -7.2950 24 6 2.5219 2.2332 -6.0701 25 1 3.5844 1.9901 -6.0586 26 8 2.3221 3.6479 -6.0439 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 3.5906 0.5105 1.2952 31 1 3.5540 2.2879 1.2056 32 1 1.4090 2.3063 2.4494 33 1 1.4456 0.5291 2.5389 34 1 2.6830 1.4889 3.3853 35 1 3.5906 0.5105 -1.2952 36 1 3.5540 2.2878 -1.2056 37 1 3.5956 1.5271 -3.7908 38 1 2.2911 -0.5579 -5.0714 39 1 0.5389 -0.2226 -5.1093 40 1 1.7405 0.6988 -10.5639 41 1 0.8790 2.1065 -7.5012 42 1 2.4716 1.6327 -8.1678 43 1 2.6837 4.1105 -6.8121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195554893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:34 Heat of formation + Delta-G solvation = -50.755274 kcal Electronic energy + Delta-G solvation = -22631.964324 eV Core-core repulsion = 19292.096200 eV Total energy + Delta-G solvation = -3339.868123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.80282 -38.05173 -36.59739 -35.05344 -33.94353 -31.84536 -31.74545 -30.40858 -28.31854 -26.98885 -25.00428 -24.00226 -21.74168 -20.78514 -20.40813 -19.90373 -19.49274 -17.23900 -16.95297 -16.45009 -15.71283 -15.46420 -14.93133 -14.55822 -14.53202 -14.11488 -13.84284 -13.59415 -13.21772 -13.10882 -12.88891 -12.34757 -12.25987 -12.03670 -11.75923 -11.53867 -11.33947 -11.31489 -11.23171 -11.00701 -10.90839 -10.82845 -10.53572 -10.22287 -9.93583 -9.74577 -9.68015 -9.34107 -8.99025 -8.72810 -8.67279 -6.93145 -5.73335 -3.15699 2.51266 2.94097 3.37006 3.40530 3.42036 3.44712 4.40049 4.62442 4.66586 4.69558 4.82636 5.12006 5.15304 5.29250 5.31412 5.40092 5.40701 5.45070 5.61066 5.65967 5.66913 5.76624 5.77858 5.82178 5.88655 6.00895 6.09991 6.12096 6.19692 6.22587 6.53520 6.68178 6.80150 6.97856 7.00262 7.30337 7.51202 7.68298 7.81569 8.10029 8.24622 8.53701 9.12808 9.73366 10.36040 11.30942 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026870 B = 0.003603 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.798539 B = 7769.359113 C = 8449.582198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.153 4.153 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.134 4.134 8 C 0.510 3.490 9 O -0.533 6.533 10 N -0.718 5.718 11 C 0.143 3.857 12 H 0.100 0.900 13 C 0.131 3.869 14 N -0.600 5.600 15 C -0.223 4.223 16 H 0.079 0.921 17 C -0.011 4.011 18 N -0.925 5.925 19 Si 0.918 3.082 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.129 3.871 24 C 0.066 3.934 25 H 0.061 0.939 26 O -0.567 6.567 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.396 0.604 38 H 0.029 0.971 39 H 0.032 0.968 40 H 0.254 0.746 41 H 0.025 0.975 42 H 0.112 0.888 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.858 3.576 17.890 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.175 4.175 8 C 0.296 3.704 9 O -0.409 6.409 10 N -0.369 5.369 11 C 0.037 3.963 12 H 0.118 0.882 13 C 0.004 3.996 14 N -0.328 5.328 15 C -0.351 4.351 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.574 5.574 19 Si 0.748 3.252 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.003 3.997 24 C 0.006 3.994 25 H 0.079 0.921 26 O -0.372 6.372 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.230 0.770 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.130 0.870 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.671 3.369 18.315 19.199 hybrid contribution 0.602 -0.679 -1.346 1.624 sum 5.273 2.690 16.968 17.971 Atomic orbital electron populations 1.23689 0.95946 1.01285 0.98969 1.22608 0.96000 0.97002 1.01525 1.20145 0.96548 0.97142 0.92405 0.90103 1.21540 0.97860 1.01851 0.94085 1.21757 0.99824 1.02179 0.97065 1.21715 0.98727 1.04113 0.92898 1.20611 0.89273 0.76017 0.84519 1.90707 1.14768 1.48861 1.86555 1.46014 1.09994 1.75101 1.05819 1.21956 0.94781 0.96607 0.82908 0.88223 1.21612 0.98777 0.93194 0.86050 1.44279 1.84686 1.04765 0.99032 1.19067 1.41699 0.87522 0.86853 0.90269 1.24801 1.02085 0.97057 0.96655 1.69726 1.56291 1.19206 1.12134 0.86094 0.78066 0.81075 0.79925 1.21098 1.21502 1.21087 1.22570 0.98817 0.83728 0.94599 1.23649 0.97943 0.80333 0.97486 0.92145 1.86408 1.83496 1.19216 1.48030 0.88663 0.89262 0.88157 0.91881 0.91900 0.92829 0.92371 0.93044 0.89003 0.88999 0.76991 0.95312 0.95003 0.93542 0.95728 0.86997 0.77594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 13.22 29.01 0.38 -1.66 16 2 C -0.15 -1.80 6.76 -36.02 -0.24 -2.04 16 3 C -0.04 -0.46 1.82 -91.77 -0.17 -0.63 16 4 H 0.08 0.98 7.60 -51.93 -0.39 0.58 16 5 C -0.12 -0.94 5.39 -26.73 -0.14 -1.08 16 6 C -0.15 -1.19 9.73 37.16 0.36 -0.83 16 7 C -0.13 -1.40 5.16 -27.89 -0.14 -1.54 16 8 C 0.51 7.66 7.58 -10.98 -0.08 7.58 16 9 O -0.53 -9.96 13.81 5.55 0.08 -9.88 16 10 N -0.72 -10.90 5.11 -52.03 -0.27 -11.16 16 11 C 0.14 2.73 3.05 -66.10 -0.20 2.53 16 12 H 0.10 2.15 7.55 -51.93 -0.39 1.76 16 13 C 0.13 2.88 7.00 -3.07 -0.02 2.86 16 14 N -0.60 -15.44 3.39 -170.07 -0.58 -16.02 16 15 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 16 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 18 N -0.93 -26.40 10.09 55.49 0.56 -25.84 16 19 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.13 3.07 5.62 -2.53 -0.01 3.06 16 24 C 0.07 1.25 4.06 -24.58 -0.10 1.16 16 25 H 0.06 1.06 8.01 -51.93 -0.42 0.65 16 26 O -0.57 -9.86 13.47 -35.23 -0.47 -10.34 16 27 H 0.10 1.26 7.83 -52.49 -0.41 0.85 16 28 H 0.09 1.05 8.06 -52.49 -0.42 0.62 16 29 H 0.10 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.40 4.88 8.56 -40.82 -0.35 4.53 16 38 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.11 2.91 5.88 -51.93 -0.31 2.61 16 43 H 0.38 5.05 9.11 45.56 0.42 5.47 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -32.34 349.24 -7.49 -39.83 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.43 Total: 8.65 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -0.62 Total: 2.63 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.28 Total: -53.02 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.40 Total: -20.22 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.34 -7.49 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195554893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.921 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds