Wall clock time and date at job start Tue Mar 31 2020 02:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50696 * 119.99903 * 2 1 4 4 C 1.53006 * 109.46668 * 239.99854 * 3 2 1 5 5 O 1.42906 * 109.47244 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.47422 * 119.99951 * 3 2 1 7 7 C 1.50700 * 109.47056 * 179.97438 * 6 3 2 8 8 O 1.21279 * 119.99931 * 6.65839 * 7 6 3 9 9 N 1.34778 * 119.99863 * 186.65276 * 7 6 3 10 10 C 1.48212 * 119.96894 * 174.60427 * 9 7 6 11 11 C 1.47137 * 110.34290 * 102.51304 * 10 9 7 12 12 C 1.53803 * 111.83892 * 58.29546 * 11 10 9 13 13 N 1.43463 * 107.96235 * 281.66367 * 12 11 10 14 14 C 1.36934 * 118.94144 * 273.61388 * 13 12 11 15 15 H 1.07997 * 120.00346 * 35.60754 * 14 13 12 16 16 C 1.38809 * 119.99363 * 215.60913 * 14 13 12 17 17 N 1.31620 * 119.99721 * 195.49399 * 16 14 13 18 18 Si 1.86800 * 120.00451 * 15.49521 * 16 14 13 19 19 H 1.48500 * 109.46895 * 271.53883 * 18 16 14 20 20 H 1.48497 * 109.47199 * 151.54013 * 18 16 14 21 21 H 1.48503 * 109.47141 * 31.53654 * 18 16 14 22 22 C 1.48856 * 122.11371 * 93.88565 * 13 12 11 23 23 C 1.43619 * 119.97067 * 354.62666 * 9 7 6 24 24 H 1.08001 * 119.99676 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99912 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99676 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46866 * 299.99707 * 4 3 2 28 28 H 1.08998 * 109.47264 * 60.00058 * 4 3 2 29 29 H 1.09005 * 109.46891 * 180.02562 * 4 3 2 30 30 H 0.96700 * 113.99532 * 60.00903 * 5 3 2 31 31 H 1.08993 * 109.46838 * 59.99588 * 6 3 2 32 32 H 1.09001 * 109.46793 * 299.99732 * 6 3 2 33 33 H 1.09003 * 109.32325 * 342.25049 * 10 9 7 34 34 H 1.08994 * 109.18284 * 222.69391 * 10 9 7 35 35 H 1.09004 * 109.00913 * 297.69090 * 11 10 9 36 36 H 1.08998 * 108.94677 * 178.86306 * 11 10 9 37 37 H 1.09006 * 109.76369 * 162.05076 * 12 11 10 38 38 H 1.09004 * 109.80276 * 41.31010 * 12 11 10 39 39 H 0.97005 * 120.00507 * 180.02562 * 17 16 14 40 40 H 1.09009 * 109.47899 * 80.35382 * 22 13 12 41 41 H 1.08998 * 109.48051 * 200.38042 * 22 13 12 42 42 H 1.09005 * 108.86980 * 31.42266 * 23 9 7 43 43 H 1.08997 * 108.87477 * 149.85804 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3860 -1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9432 1.3862 1.2492 7 6 3.6971 2.6911 1.2488 8 8 3.4575 3.5296 0.4060 9 7 4.6375 2.9263 2.1852 10 6 5.4615 4.1562 2.1144 11 6 4.9815 5.1501 3.0873 12 6 5.0119 4.6045 4.5250 13 7 3.8728 3.7496 4.6979 14 6 2.6792 4.3044 5.0755 15 1 2.3992 5.2821 4.7122 16 6 1.8291 3.6100 5.9252 17 7 0.5732 3.9836 6.0491 18 14 2.4676 2.1453 6.8929 19 1 2.3139 0.9111 6.0817 20 1 1.6936 2.0091 8.1529 21 1 3.9029 2.3515 7.2135 22 6 3.9483 2.2782 4.4859 23 6 4.8407 1.9846 3.2504 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.6515 0.5575 -1.2492 28 1 2.3165 1.3282 -2.1393 29 1 3.4886 2.3298 -1.2491 30 1 0.5434 2.4034 0.7643 31 1 3.6514 0.5578 1.2492 32 1 2.3165 1.3285 2.1392 33 1 5.3987 4.5751 1.1100 34 1 6.4987 3.9057 2.3365 35 1 3.9583 5.4287 2.8350 36 1 5.6145 6.0356 3.0303 37 1 4.9634 5.4310 5.2341 38 1 5.9277 4.0353 4.6847 39 1 -0.0209 3.4986 6.6431 40 1 4.3777 1.8052 5.3692 41 1 2.9469 1.8840 4.3129 42 1 4.6165 0.9831 2.8831 43 1 5.8859 2.0196 3.5574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195652104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:21 Heat of formation + Delta-G solvation = -28.425224 kcal Electronic energy + Delta-G solvation = -24287.684878 eV Core-core repulsion = 20948.785058 eV Total energy + Delta-G solvation = -3338.899820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.12918 -38.25452 -36.77426 -34.30405 -33.06185 -32.69587 -31.47019 -30.94126 -28.25195 -27.45526 -25.79510 -23.43142 -23.08220 -21.72063 -19.95506 -19.50857 -18.56032 -17.23208 -16.59333 -16.43969 -15.80795 -15.73043 -15.01344 -14.66620 -14.36221 -14.24841 -13.77511 -13.35736 -13.13749 -12.84273 -12.60699 -12.51830 -12.19812 -12.10945 -12.03429 -11.68764 -11.47892 -11.39826 -11.27965 -10.95539 -10.88242 -10.45737 -10.39073 -10.17072 -9.97627 -9.93957 -9.59708 -9.41808 -9.10500 -8.62236 -8.11566 -6.82496 -5.98156 -3.43913 2.22178 3.09995 3.24094 3.41106 3.43536 3.46908 4.42612 4.47533 4.71485 4.86839 4.91909 5.08818 5.14301 5.25559 5.33354 5.39339 5.50756 5.56098 5.58802 5.77945 5.80438 5.82802 5.86692 5.89695 5.98225 6.06875 6.16812 6.31151 6.34053 6.41558 6.47661 6.51604 6.55817 6.73590 6.73771 6.94746 7.16224 7.88847 7.94846 8.04664 8.40104 8.69961 8.97920 9.69916 10.06327 11.17950 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.007302 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.869709 B = 3833.821567 C = 4803.590675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.187 4.187 3 C 0.178 3.822 4 C -0.141 4.141 5 O -0.537 6.537 6 C -0.166 4.166 7 C 0.523 3.477 8 O -0.525 6.525 9 N -0.592 5.592 10 C 0.131 3.869 11 C -0.168 4.168 12 C 0.163 3.837 13 N -0.599 5.599 14 C -0.263 4.263 15 H 0.080 0.920 16 C 0.029 3.971 17 N -0.908 5.908 18 Si 0.888 3.112 19 H -0.288 1.288 20 H -0.303 1.303 21 H -0.273 1.273 22 C 0.106 3.894 23 C 0.094 3.906 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.374 0.626 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.034 0.966 39 H 0.262 0.738 40 H 0.034 0.966 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -8.826 -9.216 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C 0.136 3.864 4 C -0.198 4.198 5 O -0.343 6.343 6 C -0.206 4.206 7 C 0.311 3.689 8 O -0.402 6.402 9 N -0.324 5.324 10 C 0.010 3.990 11 C -0.209 4.209 12 C 0.035 3.965 13 N -0.322 5.322 14 C -0.392 4.392 15 H 0.097 0.903 16 C -0.170 4.170 17 N -0.551 5.551 18 Si 0.718 3.282 19 H -0.215 1.215 20 H -0.232 1.232 21 H -0.198 1.198 22 C -0.020 4.020 23 C -0.032 4.032 24 H 0.124 0.876 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.221 0.779 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.013 -8.253 -10.146 15.338 hybrid contribution -0.152 -1.221 1.479 1.924 sum 7.861 -9.474 -8.667 15.056 Atomic orbital electron populations 1.23873 0.96095 1.02372 0.99366 1.23610 0.96781 0.98759 1.01427 1.19799 0.88196 0.84138 0.94283 1.21839 0.98756 1.03608 0.95570 1.86666 1.50063 1.48678 1.48848 1.22428 1.00316 0.96954 1.00905 1.20225 0.79099 0.88559 0.80979 1.90654 1.63990 1.46829 1.38693 1.47381 1.37007 1.22569 1.25472 1.20542 0.92655 0.85243 1.00583 1.21803 1.02670 0.97685 0.98764 1.20374 0.89116 0.93751 0.93223 1.43855 1.07845 1.01087 1.79418 1.18863 0.93526 1.04169 1.22636 0.90279 1.25492 0.95762 0.98256 0.97512 1.69817 1.03876 1.41963 1.39408 0.86884 0.78583 0.82796 0.79911 1.21503 1.23156 1.19844 1.22653 0.98977 0.86511 0.93907 1.21840 1.00430 0.91863 0.89107 0.87561 0.88409 0.86927 0.92187 0.92352 0.89425 0.77865 0.88835 0.88259 0.90406 0.92276 0.90827 0.92478 0.92700 0.94786 0.92787 0.94841 0.91430 0.91256 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 13.93 29.01 0.40 -1.68 16 2 C -0.19 -2.24 8.77 -36.03 -0.32 -2.55 16 3 C 0.18 2.53 0.94 -91.77 -0.09 2.45 16 4 C -0.14 -1.93 8.51 37.16 0.32 -1.61 16 5 O -0.54 -9.07 10.69 -54.86 -0.59 -9.66 16 6 C -0.17 -2.42 3.55 -27.88 -0.10 -2.52 16 7 C 0.52 9.29 7.14 -10.98 -0.08 9.21 16 8 O -0.53 -10.90 12.60 -14.07 -0.18 -11.08 16 9 N -0.59 -9.89 2.46 -176.44 -0.43 -10.33 16 10 C 0.13 2.08 5.67 -5.91 -0.03 2.05 16 11 C -0.17 -2.96 5.64 -29.13 -0.16 -3.13 16 12 C 0.16 3.11 5.63 -5.23 -0.03 3.08 16 13 N -0.60 -13.53 2.18 -171.78 -0.37 -13.90 16 14 C -0.26 -7.19 9.61 -15.06 -0.14 -7.34 16 15 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 16 C 0.03 0.82 5.25 -17.43 -0.09 0.73 16 17 N -0.91 -27.46 13.97 55.49 0.78 -26.68 16 18 Si 0.89 21.62 24.09 -169.99 -4.09 17.52 16 19 H -0.29 -6.62 6.79 56.52 0.38 -6.23 16 20 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 21 H -0.27 -6.50 6.69 56.52 0.38 -6.12 16 22 C 0.11 2.09 4.58 -1.57 -0.01 2.09 16 23 C 0.09 1.44 5.15 -4.40 -0.02 1.42 16 24 H 0.11 1.28 6.41 -52.49 -0.34 0.94 16 25 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 26 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.42 5.76 -51.93 -0.30 1.12 16 30 H 0.37 5.69 8.05 45.56 0.37 6.06 16 31 H 0.09 1.09 7.20 -51.93 -0.37 0.72 16 32 H 0.10 1.55 7.88 -51.93 -0.41 1.15 16 33 H 0.08 1.28 7.19 -51.93 -0.37 0.90 16 34 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 35 H 0.07 1.60 7.91 -51.93 -0.41 1.19 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 1.09 8.02 -51.93 -0.42 0.67 16 38 H 0.03 0.57 7.59 -51.93 -0.39 0.18 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.03 0.67 5.70 -51.92 -0.30 0.38 16 41 H 0.07 1.47 6.04 -51.93 -0.31 1.15 16 42 H 0.07 0.88 6.19 -51.93 -0.32 0.56 16 43 H 0.07 0.90 7.73 -51.93 -0.40 0.50 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -32.84 327.56 -6.42 -39.26 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.11 Total: 7.74 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.35 Total: 2.20 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.03 Total: -50.92 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.76 Total: -20.74 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.09 Total: 17.52 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.84 -6.42 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195652104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.833 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds