Wall clock time and date at job start Tue Mar 31 2020 02:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99793 * 2 1 4 4 C 1.52999 * 109.47353 * 119.99974 * 3 2 1 5 5 O 1.42895 * 109.47322 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.47375 * 239.99542 * 3 2 1 7 7 C 1.50691 * 109.47669 * 177.00575 * 6 3 2 8 8 O 1.21285 * 119.99837 * 355.89637 * 7 6 3 9 9 N 1.34778 * 120.00386 * 175.89250 * 7 6 3 10 10 C 1.48211 * 119.97103 * 175.04289 * 9 7 6 11 11 C 1.47138 * 110.34573 * 102.46877 * 10 9 7 12 12 C 1.53236 * 111.81642 * 58.21859 * 11 10 9 13 13 N 1.43463 * 108.26462 * 281.68318 * 12 11 10 14 14 C 1.36937 * 118.93648 * 273.77487 * 13 12 11 15 15 H 1.08005 * 120.00093 * 28.96430 * 14 13 12 16 16 C 1.38810 * 119.99935 * 208.95148 * 14 13 12 17 17 N 1.31618 * 120.00454 * 201.31371 * 16 14 13 18 18 Si 1.86801 * 120.00175 * 21.31681 * 16 14 13 19 19 H 1.48500 * 109.47238 * 274.27612 * 18 16 14 20 20 H 1.48492 * 109.47623 * 154.26924 * 18 16 14 21 21 H 1.48505 * 109.46818 * 34.26883 * 18 16 14 22 22 C 1.48854 * 122.11844 * 93.50642 * 13 12 11 23 23 C 1.43615 * 119.96750 * 355.01898 * 9 7 6 24 24 H 1.07999 * 119.99666 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.99941 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.99941 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47254 * 185.93045 * 4 3 2 28 28 H 1.09001 * 109.47182 * 305.93282 * 4 3 2 29 29 H 1.08999 * 109.47171 * 65.92693 * 4 3 2 30 30 H 0.96695 * 113.99998 * 299.99815 * 5 3 2 31 31 H 1.09002 * 109.46771 * 57.00444 * 6 3 2 32 32 H 1.09004 * 109.47295 * 297.01233 * 6 3 2 33 33 H 1.09006 * 109.31817 * 222.72723 * 10 9 7 34 34 H 1.08992 * 109.32794 * 342.37207 * 10 9 7 35 35 H 1.08999 * 109.00855 * 178.90069 * 11 10 9 36 36 H 1.09010 * 109.00054 * 297.76028 * 11 10 9 37 37 H 1.09001 * 109.49005 * 162.04477 * 12 11 10 38 38 H 1.08996 * 109.73316 * 41.46654 * 12 11 10 39 39 H 0.97002 * 120.00786 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.48415 * 80.87839 * 22 13 12 41 41 H 1.09008 * 109.47518 * 200.90073 * 22 13 12 42 42 H 1.09000 * 108.87488 * 149.90960 * 23 9 7 43 43 H 1.09001 * 108.87736 * 31.47304 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 8 1.1349 2.3912 -0.0006 6 6 2.9432 1.3862 -1.2492 7 6 3.6404 2.7216 -1.2869 8 8 3.3958 3.5574 -0.4428 9 7 4.5357 2.9872 -2.2586 10 6 5.1390 4.3371 -2.3607 11 6 6.5058 4.3291 -1.8158 12 6 7.4021 3.3198 -2.5411 13 7 7.0995 2.0095 -2.0416 14 6 7.7388 1.5660 -0.9148 15 1 8.0688 2.2727 -0.1676 16 6 7.9626 0.2082 -0.7327 17 7 8.1776 -0.2672 0.4757 18 14 7.9586 -0.9445 -2.2026 19 1 6.5665 -1.3733 -2.4917 20 1 8.7908 -2.1363 -1.8994 21 1 8.5152 -0.2400 -3.3855 22 6 6.1086 1.1188 -2.7054 23 6 4.9047 1.9618 -3.1940 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.4066 2.3713 1.3039 28 1 2.3307 1.2231 2.1361 29 1 3.7186 0.6220 1.1978 30 1 0.5439 2.4030 -0.7659 31 1 2.3226 1.2750 -2.1384 32 1 3.6862 0.5890 -1.2228 33 1 5.1698 4.6402 -3.4073 34 1 4.5331 5.0466 -1.7973 35 1 6.9351 5.3257 -1.9194 36 1 6.4647 4.0687 -0.7581 37 1 8.4481 3.5562 -2.3459 38 1 7.2085 3.3594 -3.6130 39 1 8.3343 -1.2159 0.6030 40 1 6.5766 0.6254 -3.5572 41 1 5.7622 0.3676 -1.9954 42 1 5.1635 2.4281 -4.1446 43 1 4.0513 1.3015 -3.3482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195652105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:23 Heat of formation + Delta-G solvation = -27.533386 kcal Electronic energy + Delta-G solvation = -24359.620249 eV Core-core repulsion = 21020.759102 eV Total energy + Delta-G solvation = -3338.861147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.12685 -38.29749 -36.79352 -34.30237 -33.12975 -32.75275 -31.45605 -30.90877 -28.21466 -27.42276 -25.80112 -23.43222 -23.07213 -21.70632 -19.94230 -19.52791 -18.58953 -17.26312 -16.63878 -16.46793 -15.84391 -15.43550 -15.24118 -14.75316 -14.34750 -13.93094 -13.85572 -13.49837 -13.01061 -12.85834 -12.66602 -12.47733 -12.09818 -12.06301 -11.92427 -11.68107 -11.46189 -11.39717 -11.24110 -10.93777 -10.88475 -10.42210 -10.37382 -10.17444 -9.99781 -9.98704 -9.58217 -9.42701 -9.10499 -8.60701 -8.11160 -6.93366 -5.98021 -3.35322 2.19468 3.10231 3.24018 3.43321 3.45086 3.47922 4.41016 4.48857 4.70232 4.84743 4.93507 5.10323 5.12245 5.28180 5.34637 5.39644 5.50557 5.58049 5.73087 5.77602 5.81329 5.82500 5.88681 5.92683 6.06306 6.18902 6.30233 6.31186 6.35831 6.47405 6.50206 6.52376 6.64367 6.71769 6.81503 6.94804 7.16034 7.83598 7.88708 8.00659 8.35871 8.71123 8.96768 9.71095 10.04748 11.18050 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.007284 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.703341 B = 3843.280740 C = 4732.203360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.178 4.178 3 C 0.178 3.822 4 C -0.140 4.140 5 O -0.535 6.535 6 C -0.165 4.165 7 C 0.524 3.476 8 O -0.525 6.525 9 N -0.592 5.592 10 C 0.131 3.869 11 C -0.169 4.169 12 C 0.163 3.837 13 N -0.598 5.598 14 C -0.262 4.262 15 H 0.082 0.918 16 C 0.027 3.973 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.287 1.287 20 H -0.304 1.304 21 H -0.276 1.276 22 C 0.107 3.893 23 C 0.095 3.905 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.363 0.637 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.034 0.966 39 H 0.262 0.738 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.231 2.534 -7.923 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.196 4.196 3 C 0.136 3.864 4 C -0.197 4.197 5 O -0.340 6.340 6 C -0.206 4.206 7 C 0.312 3.688 8 O -0.401 6.401 9 N -0.325 5.325 10 C 0.010 3.990 11 C -0.210 4.210 12 C 0.035 3.965 13 N -0.321 5.321 14 C -0.390 4.390 15 H 0.100 0.900 16 C -0.172 4.172 17 N -0.546 5.546 18 Si 0.711 3.289 19 H -0.215 1.215 20 H -0.232 1.232 21 H -0.202 1.202 22 C -0.019 4.019 23 C -0.032 4.032 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.134 0.866 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.209 0.791 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.998 3.001 -6.815 14.121 hybrid contribution -0.055 -1.270 -1.408 1.897 sum -12.053 1.731 -8.223 14.693 Atomic orbital electron populations 1.23793 0.95964 1.02071 1.00863 1.23695 0.96701 0.99184 1.00038 1.19873 0.87820 0.83673 0.95001 1.21814 0.98332 1.04975 0.94591 1.86746 1.50014 1.49080 1.48117 1.22430 1.00685 0.97718 0.99724 1.20207 0.79217 0.88783 0.80638 1.90665 1.64481 1.48383 1.36536 1.47368 1.41854 1.11947 1.31342 1.20533 0.94955 0.83458 1.00103 1.21726 0.95981 0.99847 1.03440 1.20244 0.96834 0.84869 0.94525 1.43886 1.43553 1.13813 1.30854 1.18879 1.32449 0.92223 0.95477 0.90042 1.25324 0.98985 0.96876 0.96017 1.69871 1.51244 1.13533 1.20002 0.87049 0.76971 0.80393 0.84535 1.21455 1.23190 1.20161 1.22579 0.89109 0.93517 0.96698 1.21777 0.98241 0.90934 0.92222 0.88460 0.87872 0.86563 0.89400 0.92634 0.91003 0.79140 0.89360 0.87820 0.92277 0.90370 0.92412 0.90785 0.92755 0.94732 0.92821 0.95002 0.91154 0.91452 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 13.93 29.01 0.40 -1.61 16 2 C -0.18 -2.19 8.77 -36.03 -0.32 -2.51 16 3 C 0.18 2.63 0.94 -91.77 -0.09 2.55 16 4 C -0.14 -2.43 8.46 37.16 0.31 -2.11 16 5 O -0.54 -8.04 10.54 -55.70 -0.59 -8.63 16 6 C -0.17 -2.45 3.34 -27.89 -0.09 -2.54 16 7 C 0.52 9.37 7.21 -10.99 -0.08 9.29 16 8 O -0.52 -10.96 12.62 -14.91 -0.19 -11.15 16 9 N -0.59 -9.95 2.46 -176.67 -0.43 -10.39 16 10 C 0.13 2.08 5.66 -5.92 -0.03 2.04 16 11 C -0.17 -2.96 5.63 -29.42 -0.17 -3.12 16 12 C 0.16 3.08 5.59 -5.53 -0.03 3.05 16 13 N -0.60 -13.45 2.28 -172.35 -0.39 -13.84 16 14 C -0.26 -7.11 9.64 -15.06 -0.15 -7.25 16 15 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 16 C 0.03 0.76 5.15 -17.43 -0.09 0.67 16 17 N -0.90 -27.17 13.97 55.49 0.78 -26.40 16 18 Si 0.88 21.45 24.09 -169.99 -4.09 17.35 16 19 H -0.29 -6.53 6.47 56.52 0.37 -6.16 16 20 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 21 H -0.28 -6.66 6.98 56.52 0.39 -6.26 16 22 C 0.11 2.13 4.46 -1.75 -0.01 2.12 16 23 C 0.09 1.46 4.99 -4.58 -0.02 1.43 16 24 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 25 H 0.10 1.04 6.41 -52.49 -0.34 0.70 16 26 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.09 1.79 6.07 -51.93 -0.32 1.47 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.36 4.03 8.05 45.56 0.37 4.39 16 31 H 0.09 1.04 7.74 -51.93 -0.40 0.64 16 32 H 0.10 1.63 7.22 -51.93 -0.37 1.25 16 33 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 34 H 0.08 1.29 7.18 -51.93 -0.37 0.92 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.60 7.91 -51.92 -0.41 1.19 16 37 H 0.05 1.06 8.02 -51.93 -0.42 0.64 16 38 H 0.03 0.57 7.58 -51.93 -0.39 0.18 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.03 0.64 6.03 -51.93 -0.31 0.32 16 41 H 0.07 1.54 5.21 -51.92 -0.27 1.27 16 42 H 0.07 0.91 7.73 -51.93 -0.40 0.50 16 43 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -32.59 326.86 -6.46 -39.05 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.11 Total: 7.06 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.35 Total: 2.01 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.05 Total: -50.62 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.78 Total: -19.77 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.09 Total: 17.35 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.59 -6.46 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195652105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.512 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds