Wall clock time and date at job start Tue Mar 31 2020 02:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99793 * 2 1 4 4 C 1.52999 * 109.47353 * 119.99974 * 3 2 1 5 5 O 1.42895 * 109.47322 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.47375 * 239.99542 * 3 2 1 7 7 C 1.50691 * 109.47669 * 177.00575 * 6 3 2 8 8 O 1.21285 * 119.99837 * 355.89637 * 7 6 3 9 9 N 1.34778 * 120.00386 * 175.89250 * 7 6 3 10 10 C 1.48211 * 119.97103 * 175.04289 * 9 7 6 11 11 C 1.47138 * 110.34573 * 102.46877 * 10 9 7 12 12 C 1.53236 * 111.81642 * 58.21859 * 11 10 9 13 13 N 1.43463 * 108.26462 * 281.68318 * 12 11 10 14 14 C 1.36937 * 118.93648 * 273.77487 * 13 12 11 15 15 H 1.08005 * 120.00093 * 28.96430 * 14 13 12 16 16 C 1.38810 * 119.99935 * 208.95148 * 14 13 12 17 17 N 1.31618 * 120.00454 * 201.31371 * 16 14 13 18 18 Si 1.86801 * 120.00175 * 21.31681 * 16 14 13 19 19 H 1.48500 * 109.47238 * 274.27612 * 18 16 14 20 20 H 1.48492 * 109.47623 * 154.26924 * 18 16 14 21 21 H 1.48505 * 109.46818 * 34.26883 * 18 16 14 22 22 C 1.48854 * 122.11844 * 93.50642 * 13 12 11 23 23 C 1.43615 * 119.96750 * 355.01898 * 9 7 6 24 24 H 1.07999 * 119.99666 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.99941 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.99941 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47254 * 185.93045 * 4 3 2 28 28 H 1.09001 * 109.47182 * 305.93282 * 4 3 2 29 29 H 1.08999 * 109.47171 * 65.92693 * 4 3 2 30 30 H 0.96695 * 113.99998 * 299.99815 * 5 3 2 31 31 H 1.09002 * 109.46771 * 57.00444 * 6 3 2 32 32 H 1.09004 * 109.47295 * 297.01233 * 6 3 2 33 33 H 1.09006 * 109.31817 * 222.72723 * 10 9 7 34 34 H 1.08992 * 109.32794 * 342.37207 * 10 9 7 35 35 H 1.08999 * 109.00855 * 178.90069 * 11 10 9 36 36 H 1.09010 * 109.00054 * 297.76028 * 11 10 9 37 37 H 1.09001 * 109.49005 * 162.04477 * 12 11 10 38 38 H 1.08996 * 109.73316 * 41.46654 * 12 11 10 39 39 H 0.97002 * 120.00786 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.48415 * 80.87839 * 22 13 12 41 41 H 1.09008 * 109.47518 * 200.90073 * 22 13 12 42 42 H 1.09000 * 108.87488 * 149.90960 * 23 9 7 43 43 H 1.09001 * 108.87736 * 31.47304 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 8 1.1349 2.3912 -0.0006 6 6 2.9432 1.3862 -1.2492 7 6 3.6404 2.7216 -1.2869 8 8 3.3958 3.5574 -0.4428 9 7 4.5357 2.9872 -2.2586 10 6 5.1390 4.3371 -2.3607 11 6 6.5058 4.3291 -1.8158 12 6 7.4021 3.3198 -2.5411 13 7 7.0995 2.0095 -2.0416 14 6 7.7388 1.5660 -0.9148 15 1 8.0688 2.2727 -0.1676 16 6 7.9626 0.2082 -0.7327 17 7 8.1776 -0.2672 0.4757 18 14 7.9586 -0.9445 -2.2026 19 1 6.5665 -1.3733 -2.4917 20 1 8.7908 -2.1363 -1.8994 21 1 8.5152 -0.2400 -3.3855 22 6 6.1086 1.1188 -2.7054 23 6 4.9047 1.9618 -3.1940 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.4066 2.3713 1.3039 28 1 2.3307 1.2231 2.1361 29 1 3.7186 0.6220 1.1978 30 1 0.5439 2.4030 -0.7659 31 1 2.3226 1.2750 -2.1384 32 1 3.6862 0.5890 -1.2228 33 1 5.1698 4.6402 -3.4073 34 1 4.5331 5.0466 -1.7973 35 1 6.9351 5.3257 -1.9194 36 1 6.4647 4.0687 -0.7581 37 1 8.4481 3.5562 -2.3459 38 1 7.2085 3.3594 -3.6130 39 1 8.3343 -1.2159 0.6030 40 1 6.5766 0.6254 -3.5572 41 1 5.7622 0.3676 -1.9954 42 1 5.1635 2.4281 -4.1446 43 1 4.0513 1.3015 -3.3482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195652105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:23 Heat of formation + Delta-G solvation = -50.806821 kcal Electronic energy + Delta-G solvation = -24360.629461 eV Core-core repulsion = 21020.759102 eV Total energy + Delta-G solvation = -3339.870359 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44843 -39.56345 -38.25622 -35.92283 -34.54144 -33.88695 -33.38647 -32.04178 -29.65171 -28.92558 -27.34360 -25.17233 -24.35677 -22.96406 -21.59426 -20.59154 -19.91472 -18.86508 -17.99551 -17.85585 -17.31268 -16.92779 -16.51680 -16.20975 -15.71853 -15.41879 -15.34487 -15.04665 -14.44759 -14.35885 -14.10381 -13.83873 -13.71014 -13.36476 -13.29873 -13.16238 -12.90464 -12.72933 -12.48860 -12.44301 -12.26496 -11.98914 -11.89474 -11.81063 -11.58735 -11.51347 -11.11388 -10.68558 -10.49981 -10.31174 -9.49706 -8.80654 -8.14219 -5.48142 1.30701 1.31041 1.44512 1.53478 1.75437 2.22977 2.44380 3.05700 3.30932 3.43167 3.62312 3.75912 3.93677 4.00538 4.13300 4.18609 4.21419 4.38633 4.41234 4.51969 4.56465 4.62422 4.68466 4.70822 4.80789 4.85083 4.87974 4.92458 4.97348 5.05462 5.14062 5.23094 5.26776 5.49295 5.66366 5.80167 5.81129 5.92091 6.16468 6.59156 6.90056 7.01986 7.37451 7.71167 8.02774 9.06399 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.007284 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.703341 B = 3843.280740 C = 4732.203360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.197 4.197 3 C 0.182 3.818 4 C -0.138 4.138 5 O -0.552 6.552 6 C -0.160 4.160 7 C 0.512 3.488 8 O -0.565 6.565 9 N -0.596 5.596 10 C 0.129 3.871 11 C -0.156 4.156 12 C 0.158 3.842 13 N -0.610 5.610 14 C -0.251 4.251 15 H 0.029 0.971 16 C -0.034 4.034 17 N -0.960 5.960 18 Si 0.952 3.048 19 H -0.256 1.256 20 H -0.318 1.318 21 H -0.264 1.264 22 C 0.098 3.902 23 C 0.098 3.902 24 H 0.119 0.881 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.380 0.620 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.016 0.984 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.260 0.740 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.622 1.930 -11.960 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.215 4.215 3 C 0.141 3.859 4 C -0.196 4.196 5 O -0.359 6.359 6 C -0.199 4.199 7 C 0.301 3.699 8 O -0.444 6.444 9 N -0.327 5.327 10 C 0.008 3.992 11 C -0.197 4.197 12 C 0.032 3.968 13 N -0.333 5.333 14 C -0.381 4.381 15 H 0.046 0.954 16 C -0.229 4.229 17 N -0.606 5.606 18 Si 0.780 3.220 19 H -0.181 1.181 20 H -0.247 1.247 21 H -0.189 1.189 22 C -0.027 4.027 23 C -0.027 4.027 24 H 0.137 0.863 25 H 0.127 0.873 26 H 0.138 0.862 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.229 0.771 31 H 0.147 0.853 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.035 0.965 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.122 0.878 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.419 2.424 -10.921 18.249 hybrid contribution 0.681 -0.939 -0.051 1.161 sum -13.737 1.484 -10.971 17.643 Atomic orbital electron populations 1.24028 0.95228 1.03386 0.97473 1.23480 0.97232 0.97730 1.03097 1.19686 0.87807 0.85090 0.93313 1.21727 0.98645 1.02040 0.97157 1.86702 1.50393 1.49391 1.49407 1.22447 1.00725 0.95241 1.01533 1.20866 0.79387 0.89494 0.80130 1.90652 1.65878 1.49914 1.37908 1.47547 1.41271 1.12601 1.31284 1.20623 0.93038 0.83218 1.02344 1.21573 0.97547 1.00837 0.99697 1.20420 0.96344 0.83313 0.96753 1.43994 1.44301 1.15256 1.29773 1.18679 1.31993 0.91453 0.95942 0.95355 1.26011 0.99476 0.98709 0.98689 1.70040 1.54108 1.13771 1.22640 0.85889 0.78308 0.77310 0.80531 1.18098 1.24698 1.18854 1.22721 0.90271 0.93602 0.96099 1.21848 0.97412 0.90862 0.92616 0.86283 0.87273 0.86220 0.93213 0.91985 0.92484 0.77081 0.85289 0.88784 0.87772 0.91557 0.89759 0.96543 0.94277 0.90539 0.93144 0.93609 0.93660 0.87799 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 13.93 67.78 0.94 -1.97 16 2 C -0.20 -4.43 8.77 25.64 0.22 -4.20 16 3 C 0.18 5.25 0.94 -11.54 -0.01 5.24 16 4 C -0.14 -5.05 8.46 71.98 0.61 -4.44 16 5 O -0.55 -15.92 10.54 -129.41 -1.36 -17.28 16 6 C -0.16 -4.43 3.34 29.85 0.10 -4.33 16 7 C 0.51 17.91 7.21 87.65 0.63 18.55 16 8 O -0.56 -24.19 12.62 16.52 0.21 -23.98 16 9 N -0.60 -18.56 2.46 -831.23 -2.04 -20.61 16 10 C 0.13 3.79 5.66 84.23 0.48 4.27 16 11 C -0.16 -5.38 5.63 28.85 0.16 -5.22 16 12 C 0.16 5.75 5.59 87.02 0.49 6.23 16 13 N -0.61 -27.09 2.28 -699.19 -1.59 -28.68 16 14 C -0.25 -14.22 9.64 84.03 0.81 -13.41 16 15 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 16 C -0.03 -1.98 5.15 84.86 0.44 -1.55 16 17 N -0.96 -60.74 13.97 21.65 0.30 -60.43 16 18 Si 0.95 44.34 24.09 68.60 1.65 45.99 16 19 H -0.26 -10.54 6.47 99.48 0.64 -9.89 16 20 H -0.32 -15.46 7.11 99.48 0.71 -14.75 16 21 H -0.26 -11.65 6.98 99.48 0.69 -10.96 16 22 C 0.10 3.62 4.46 86.56 0.39 4.00 16 23 C 0.10 2.56 4.99 87.55 0.44 3.00 16 24 H 0.12 1.63 8.06 -2.91 -0.02 1.61 16 25 H 0.11 1.82 6.41 -2.91 -0.02 1.80 16 26 H 0.12 2.60 8.06 -2.91 -0.02 2.57 16 27 H 0.05 2.17 6.07 -2.39 -0.01 2.16 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.38 7.49 8.05 -74.06 -0.60 6.90 16 31 H 0.13 2.47 7.74 -2.39 -0.02 2.46 16 32 H 0.09 2.83 7.22 -2.38 -0.02 2.81 16 33 H 0.10 2.19 8.06 -2.38 -0.02 2.17 16 34 H 0.07 2.13 7.18 -2.39 -0.02 2.12 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.02 0.73 7.91 -2.38 -0.02 0.71 16 37 H 0.04 1.52 8.02 -2.39 -0.02 1.50 16 38 H 0.08 2.19 7.58 -2.39 -0.02 2.17 16 39 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 40 H 0.05 1.60 6.03 -2.39 -0.01 1.58 16 41 H 0.05 1.89 5.21 -2.38 -0.01 1.88 16 42 H 0.10 2.06 7.73 -2.39 -0.02 2.04 16 43 H 0.10 2.06 6.47 -2.39 -0.02 2.05 16 Total: -1.00 -77.79 326.86 3.19 -74.60 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.33 Total: 24.22 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.69 Total: 6.17 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -3.33 Total: -109.72 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -1.16 Total: -41.26 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.65 Total: 45.99 kcal Total: -77.79 3.19 -74.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195652105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.794 kcal (2) G-P(sol) polarization free energy of solvation -77.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds