Wall clock time and date at job start Tue Mar 31 2020 02:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 120.00045 * 2 1 4 4 C 1.52996 * 109.46898 * 124.99900 * 3 2 1 5 5 C 1.53003 * 109.47542 * 59.99936 * 4 3 2 6 6 C 1.53000 * 109.47452 * 299.99625 * 4 3 2 7 7 C 1.50706 * 109.46898 * 179.97438 * 4 3 2 8 8 O 1.21280 * 119.99877 * 359.97438 * 7 4 3 9 9 N 1.34774 * 120.00082 * 180.02562 * 7 4 3 10 10 C 1.46503 * 120.00194 * 179.72613 * 9 7 4 11 11 H 1.08999 * 110.88556 * 34.57205 * 10 9 7 12 12 C 1.54909 * 111.00077 * 270.69110 * 10 9 7 13 13 N 1.47471 * 104.80901 * 204.94574 * 12 10 9 14 14 C 1.36937 * 125.62593 * 204.14142 * 13 12 10 15 15 H 1.07996 * 120.00321 * 354.79884 * 14 13 12 16 16 C 1.38811 * 119.99572 * 174.79922 * 14 13 12 17 17 N 1.31620 * 120.00041 * 7.06193 * 16 14 13 18 18 Si 1.86797 * 119.99906 * 187.06819 * 16 14 13 19 19 H 1.48500 * 109.47506 * 94.98634 * 18 16 14 20 20 H 1.48503 * 109.47139 * 214.98232 * 18 16 14 21 21 H 1.48503 * 109.47318 * 334.98411 * 18 16 14 22 22 C 1.47025 * 108.72256 * 24.07436 * 13 12 10 23 23 C 1.54320 * 107.26831 * 358.97163 * 22 13 12 24 24 H 1.09008 * 110.72235 * 96.17454 * 23 22 13 25 25 O 1.42908 * 110.87032 * 219.37275 * 23 22 13 26 26 H 1.08003 * 119.99600 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.99595 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00388 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46905 * 4.99456 * 3 2 1 30 30 H 1.09005 * 109.46836 * 244.99646 * 3 2 1 31 31 H 1.08998 * 109.47002 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.46704 * 299.99972 * 5 4 3 33 33 H 1.08997 * 109.46919 * 59.99631 * 5 4 3 34 34 H 1.08999 * 109.47009 * 300.00847 * 6 4 3 35 35 H 1.09000 * 109.46934 * 59.99942 * 6 4 3 36 36 H 1.08990 * 109.47665 * 180.02562 * 6 4 3 37 37 H 0.97010 * 119.99690 * 359.97438 * 9 7 4 38 38 H 1.08995 * 110.36920 * 323.75446 * 12 10 9 39 39 H 1.09002 * 110.36620 * 86.07671 * 12 10 9 40 40 H 0.97007 * 120.00009 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.87750 * 239.55504 * 22 13 12 42 42 H 1.08995 * 109.88322 * 118.38789 * 22 13 12 43 43 H 0.96698 * 113.99576 * 293.61248 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 4.0245 0.1729 1.0560 6 6 2.2521 1.1963 2.4890 7 6 3.7890 2.6380 1.1813 8 8 3.5711 3.4640 0.3204 9 7 4.7062 2.8866 2.1370 10 6 5.4434 4.1526 2.1332 11 1 4.8145 4.9674 1.7747 12 6 6.7382 4.0384 1.2905 13 7 7.6383 5.0688 1.8409 14 6 8.6733 5.6644 1.1707 15 1 8.9393 5.3283 0.1794 16 6 9.3807 6.7001 1.7655 17 7 9.1508 7.0176 3.0220 18 14 10.6587 7.6434 0.7826 19 1 10.0402 8.8668 0.2116 20 1 11.7837 8.0270 1.6729 21 1 11.1684 6.7865 -0.3179 22 6 7.2394 5.3520 3.2274 23 6 6.0138 4.4683 3.5411 24 1 6.3182 3.5525 4.0481 25 8 5.0573 5.1841 4.3253 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6214 1.4026 -0.9314 31 1 4.7169 0.1931 1.8976 32 1 3.4795 -0.7711 1.0560 33 1 4.5823 0.2703 0.1247 34 1 1.5471 2.0228 2.5785 35 1 1.7070 0.2524 2.4890 36 1 2.9441 1.2167 3.3308 37 1 4.8807 2.2257 2.8254 38 1 7.1799 3.0486 1.4057 39 1 6.5265 4.2404 0.2405 40 1 9.6448 7.7416 3.4375 41 1 6.9736 6.4042 3.3291 42 1 8.0566 5.1067 3.9057 43 1 5.3650 5.4059 5.2148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196469461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:20 Heat of formation + Delta-G solvation = -49.033814 kcal Electronic energy + Delta-G solvation = -22994.196402 eV Core-core repulsion = 19654.402927 eV Total energy + Delta-G solvation = -3339.793475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21646 -38.14241 -36.49268 -35.06385 -34.12802 -32.89473 -31.54316 -28.39178 -27.54302 -27.08140 -26.70349 -24.58715 -22.97176 -20.58810 -20.38615 -19.97764 -18.87907 -17.19181 -16.89403 -16.44326 -15.92324 -15.35343 -15.06292 -14.69063 -14.24183 -14.05285 -13.95773 -13.48519 -13.26974 -12.89290 -12.68159 -12.44390 -12.40286 -12.25846 -12.03404 -11.81056 -11.49241 -11.28827 -11.23967 -11.09479 -10.96400 -10.89519 -10.81284 -10.15242 -9.89158 -9.86497 -9.61228 -9.47801 -9.22946 -8.78703 -8.60170 -6.91199 -5.77879 -3.10940 2.09976 2.85676 3.33511 3.40187 3.45446 3.46752 4.43037 4.56680 4.57688 4.62918 4.74176 4.95453 5.03862 5.11450 5.22556 5.41353 5.42763 5.56311 5.58020 5.58798 5.63181 5.68253 5.71798 5.80083 5.82070 5.92711 6.07240 6.07726 6.12012 6.14934 6.45804 6.55216 6.61135 6.63842 6.91325 7.30201 7.48095 7.70593 7.76744 8.11090 8.17150 8.46338 9.14614 9.75016 10.38582 11.34331 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030324 B = 0.003758 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.136152 B = 7448.959983 C = 7959.458538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C -0.072 4.072 4 C -0.077 4.077 5 C -0.142 4.142 6 C -0.138 4.138 7 C 0.521 3.479 8 O -0.538 6.538 9 N -0.713 5.713 10 C 0.138 3.862 11 H 0.103 0.897 12 C 0.131 3.869 13 N -0.600 5.600 14 C -0.230 4.230 15 H 0.081 0.919 16 C -0.006 4.006 17 N -0.922 5.922 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.153 3.847 23 C 0.069 3.931 24 H 0.056 0.944 25 O -0.563 6.563 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.395 0.605 38 H 0.023 0.977 39 H 0.050 0.950 40 H 0.253 0.747 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.219 -15.133 1.325 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.164 4.164 3 C -0.109 4.109 4 C -0.080 4.080 5 C -0.200 4.200 6 C -0.196 4.196 7 C 0.307 3.693 8 O -0.415 6.415 9 N -0.363 5.363 10 C 0.033 3.967 11 H 0.121 0.879 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.358 4.358 15 H 0.099 0.901 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.027 3.973 23 C 0.009 3.991 24 H 0.074 0.926 25 O -0.368 6.368 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.230 0.770 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.564 -14.412 0.202 19.792 hybrid contribution 1.203 0.259 0.461 1.314 sum -12.361 -14.153 0.664 18.803 Atomic orbital electron populations 1.23844 0.95964 1.01710 1.01992 1.22979 0.95936 0.98399 0.99076 1.20604 0.97503 0.95364 0.97479 1.20746 0.96031 0.93474 0.97727 1.21912 0.98304 0.96966 1.02777 1.21857 1.00114 1.02751 0.94863 1.20463 0.79386 0.88273 0.81190 1.90706 1.65847 1.47880 1.37030 1.45928 1.40238 1.19917 1.30222 1.22242 0.93576 0.85772 0.95097 0.87944 1.21856 0.88215 0.92829 0.96787 1.44256 1.33775 1.44751 1.10009 1.19091 1.06195 1.11722 0.98760 0.90127 1.24835 1.00154 0.98820 0.96447 1.69938 1.44403 1.31952 1.10606 0.86076 0.80423 0.80215 0.78932 1.21481 1.21740 1.20542 1.21824 0.91235 0.97427 0.86783 1.23445 0.90667 0.94572 0.90428 0.92597 1.86473 1.42612 1.78094 1.29599 0.88614 0.88695 0.87279 0.90701 0.90123 0.92044 0.91324 0.91826 0.92081 0.91345 0.92162 0.77036 0.95967 0.93153 0.93650 0.91977 0.93519 0.77727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 14.32 29.01 0.42 -1.18 16 2 C -0.15 -1.26 7.65 -36.02 -0.28 -1.53 16 3 C -0.07 -0.79 4.02 -27.88 -0.11 -0.90 16 4 C -0.08 -0.84 0.64 -155.66 -0.10 -0.94 16 5 C -0.14 -1.27 8.11 37.16 0.30 -0.97 16 6 C -0.14 -1.28 8.13 37.16 0.30 -0.98 16 7 C 0.52 8.00 6.48 -10.98 -0.07 7.93 16 8 O -0.54 -10.58 15.68 5.56 0.09 -10.49 16 9 N -0.71 -10.66 5.00 -51.73 -0.26 -10.92 16 10 C 0.14 2.64 3.09 -65.78 -0.20 2.44 16 11 H 0.10 2.28 7.64 -51.93 -0.40 1.88 16 12 C 0.13 2.83 6.93 -2.50 -0.02 2.81 16 13 N -0.60 -15.48 3.40 -170.04 -0.58 -16.06 16 14 C -0.23 -6.47 10.26 -15.06 -0.15 -6.62 16 15 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 16 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 17 N -0.92 -26.81 10.36 55.49 0.57 -26.23 16 18 Si 0.91 22.20 29.56 -169.99 -5.02 17.18 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.15 3.64 5.16 -3.06 -0.02 3.63 16 23 C 0.07 1.27 3.96 -24.90 -0.10 1.18 16 24 H 0.06 0.90 8.00 -51.92 -0.42 0.49 16 25 O -0.56 -9.76 13.40 -35.23 -0.47 -10.23 16 26 H 0.10 0.79 7.84 -52.48 -0.41 0.37 16 27 H 0.09 0.63 8.06 -52.49 -0.42 0.21 16 28 H 0.11 0.80 6.80 -52.49 -0.36 0.44 16 29 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 30 H 0.08 0.98 8.10 -51.93 -0.42 0.55 16 31 H 0.06 0.51 7.56 -51.93 -0.39 0.11 16 32 H 0.07 0.49 6.52 -51.93 -0.34 0.15 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.53 7.22 -51.93 -0.37 0.16 16 36 H 0.06 0.51 7.56 -51.93 -0.39 0.11 16 37 H 0.40 4.75 7.37 -40.82 -0.30 4.45 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 41 H 0.06 1.67 7.22 -51.93 -0.37 1.30 16 42 H 0.05 1.19 7.61 -51.93 -0.40 0.80 16 43 H 0.38 4.92 9.12 45.56 0.42 5.34 16 LS Contribution 346.02 15.07 5.21 5.21 Total: -1.00 -33.08 346.02 -6.80 -39.88 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.22 Total: 7.09 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -0.12 Total: 4.58 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.26 Total: -53.22 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.38 Total: -20.72 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.08 -6.80 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196469461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.157 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds