Wall clock time and date at job start Tue Mar 31 2020 02:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99923 * 2 1 4 4 C 1.52994 * 109.46953 * 124.99995 * 3 2 1 5 5 O 1.42902 * 109.46896 * 179.97438 * 4 3 2 6 6 C 1.42908 * 113.99683 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46928 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99794 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00130 * 180.02562 * 7 6 5 10 10 C 1.48208 * 119.97047 * 179.97438 * 9 7 6 11 11 C 1.47147 * 110.34111 * 102.46634 * 10 9 7 12 12 C 1.53794 * 111.83983 * 58.29653 * 11 10 9 13 13 N 1.43463 * 107.96167 * 281.67092 * 12 11 10 14 14 C 1.36940 * 118.93842 * 273.62815 * 13 12 11 15 15 H 1.07993 * 120.00295 * 24.96939 * 14 13 12 16 16 C 1.38810 * 119.99829 * 204.96370 * 14 13 12 17 17 N 1.31621 * 120.00139 * 14.64107 * 16 14 13 18 18 Si 1.86798 * 120.00112 * 194.63681 * 16 14 13 19 19 H 1.48502 * 109.47083 * 90.00197 * 18 16 14 20 20 H 1.48497 * 109.47317 * 209.99959 * 18 16 14 21 21 H 1.48501 * 109.47262 * 330.00660 * 18 16 14 22 22 C 1.48861 * 122.12187 * 93.65311 * 13 12 11 23 23 C 1.43616 * 119.96795 * 359.72406 * 9 7 6 24 24 H 1.08001 * 119.99922 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.00105 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99922 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47348 * 4.99880 * 3 2 1 28 28 H 1.09004 * 109.46724 * 245.00181 * 3 2 1 29 29 H 1.09003 * 109.46956 * 60.00226 * 4 3 2 30 30 H 1.08995 * 109.47591 * 299.99723 * 4 3 2 31 31 H 1.08994 * 109.47418 * 299.99822 * 6 5 4 32 32 H 1.08998 * 109.47006 * 60.00742 * 6 5 4 33 33 H 1.09007 * 109.32501 * 222.72971 * 10 9 7 34 34 H 1.09003 * 109.32909 * 342.37520 * 10 9 7 35 35 H 1.09006 * 109.00123 * 178.89957 * 11 10 9 36 36 H 1.08996 * 109.00682 * 297.76047 * 11 10 9 37 37 H 1.08994 * 109.76640 * 41.28653 * 12 11 10 38 38 H 1.09004 * 109.76457 * 162.00361 * 12 11 10 39 39 H 0.97000 * 120.00149 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.48255 * 80.57831 * 22 13 12 41 41 H 1.08992 * 109.48015 * 200.61540 * 22 13 12 42 42 H 1.08990 * 108.87899 * 31.47013 * 23 9 7 43 43 H 1.09001 * 108.87222 * 149.90785 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 8 3.7499 2.5704 1.1812 6 6 4.6895 2.6990 2.2503 7 6 5.3815 4.0342 2.1529 8 8 5.0983 4.8000 1.2560 9 7 6.3157 4.3770 3.0618 10 6 6.9963 5.6900 2.9650 11 6 6.4356 6.6304 3.9481 12 6 6.5651 6.0998 5.3858 13 7 5.5328 5.1252 5.5923 14 6 4.2956 5.5467 6.0006 15 1 3.9698 6.5535 5.7852 16 6 3.4601 4.6798 6.6914 17 7 3.9442 3.5690 7.2054 18 14 1.6486 5.0896 6.8917 19 1 0.8838 4.5223 5.7522 20 1 1.1471 4.5081 8.1627 21 1 1.4748 6.5641 6.9193 22 6 5.7635 3.6703 5.3774 23 6 6.6471 3.4717 4.1264 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9315 29 1 3.7400 0.5065 1.0920 30 1 2.4773 1.2356 2.1130 31 1 4.1664 2.6301 3.2041 32 1 5.4285 1.9007 2.1826 33 1 8.0613 5.5594 3.1574 34 1 6.8579 6.0951 1.9625 35 1 6.9640 7.5808 3.8715 36 1 5.3813 6.7917 3.7239 37 1 7.5422 5.6361 5.5210 38 1 6.4454 6.9201 6.0936 39 1 3.3604 2.9633 7.6884 40 1 6.2648 3.2491 6.2488 41 1 4.8072 3.1685 5.2302 42 1 6.5229 2.4489 3.7710 43 1 7.6900 3.6219 4.4051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198315599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:41 Heat of formation + Delta-G solvation = -31.251412 kcal Electronic energy + Delta-G solvation = -23306.766068 eV Core-core repulsion = 19967.743695 eV Total energy + Delta-G solvation = -3339.022373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.78403 -37.86495 -36.75465 -34.99450 -34.22083 -32.84162 -30.92198 -29.79388 -27.89922 -27.04119 -25.18314 -23.68991 -22.98630 -21.85695 -19.95505 -19.77075 -18.53696 -17.19156 -16.67715 -16.27279 -16.11784 -15.65239 -15.17027 -14.81485 -14.45782 -14.16136 -13.78371 -13.45678 -13.35118 -13.15743 -12.81821 -12.55784 -12.33788 -12.09105 -11.78389 -11.48466 -11.34009 -11.23754 -11.09486 -10.99747 -10.78367 -10.55401 -10.25691 -10.18703 -9.89199 -9.71403 -9.54116 -9.46159 -9.19934 -8.49983 -8.05460 -6.73110 -5.82343 -3.23775 2.09353 3.03849 3.24233 3.36800 3.43595 3.45941 4.10142 4.48806 4.83820 4.96998 5.00380 5.16699 5.20804 5.28206 5.36165 5.41929 5.43852 5.51079 5.63228 5.68963 5.73596 5.79864 5.89624 5.93276 5.97275 6.06088 6.12551 6.28187 6.44586 6.46911 6.53137 6.61037 6.81795 6.89179 7.04951 7.21957 7.35348 7.44246 7.78637 7.96408 8.41153 8.69522 9.18135 9.85638 10.30381 11.25734 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.005956 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.181345 B = 4700.372514 C = 6196.293196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.093 4.093 4 C 0.065 3.935 5 O -0.366 6.366 6 C 0.047 3.953 7 C 0.523 3.477 8 O -0.538 6.538 9 N -0.584 5.584 10 C 0.132 3.868 11 C -0.171 4.171 12 C 0.163 3.837 13 N -0.591 5.591 14 C -0.250 4.250 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.911 5.911 18 Si 0.898 3.102 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.163 3.837 23 C 0.077 3.923 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.253 0.747 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.942 -6.463 -9.446 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.170 4.170 3 C -0.130 4.130 4 C -0.012 4.012 5 O -0.284 6.284 6 C -0.033 4.033 7 C 0.311 3.689 8 O -0.415 6.415 9 N -0.317 5.317 10 C 0.011 3.989 11 C -0.212 4.212 12 C 0.034 3.966 13 N -0.313 5.313 14 C -0.380 4.380 15 H 0.083 0.917 16 C -0.194 4.194 17 N -0.556 5.556 18 Si 0.728 3.272 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.037 3.963 23 C -0.049 4.049 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.702 -6.041 -9.949 11.949 hybrid contribution -1.009 -0.172 0.573 1.173 sum 1.693 -6.212 -9.377 11.375 Atomic orbital electron populations 1.23903 0.95929 1.02006 1.00835 1.22811 0.96013 0.98008 1.00150 1.20635 0.98029 0.95839 0.98501 1.22451 0.93970 0.86224 0.98578 1.87948 1.54516 1.37216 1.48755 1.22293 0.92774 0.95963 0.92253 1.20019 0.79237 0.87975 0.81707 1.90642 1.62965 1.52947 1.34975 1.47303 1.39426 1.18340 1.26665 1.20538 0.94874 0.83039 1.00464 1.21894 1.02346 0.97586 0.99413 1.20289 0.91260 0.92560 0.92479 1.43651 1.08681 1.01222 1.77738 1.19215 0.91529 0.98614 1.28615 0.91708 1.24942 0.98773 0.98047 0.97668 1.70008 1.33898 1.13205 1.38485 0.86339 0.85668 0.78053 0.77090 1.21446 1.21742 1.20451 1.21866 0.98198 0.85220 0.91035 1.22162 1.00567 0.91976 0.90146 0.88377 0.88395 0.87232 0.90470 0.90105 0.93288 0.92861 0.89389 0.90935 0.92003 0.90455 0.92568 0.91283 0.94796 0.93569 0.93702 0.93840 0.90636 0.91816 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 14.32 29.01 0.42 -1.40 16 2 C -0.15 -1.53 9.52 -36.03 -0.34 -1.87 16 3 C -0.09 -1.11 6.03 -27.89 -0.17 -1.28 16 4 C 0.06 0.88 5.92 37.15 0.22 1.10 16 5 O -0.37 -6.50 9.88 -55.14 -0.54 -7.05 16 6 C 0.05 0.80 4.97 36.01 0.18 0.98 16 7 C 0.52 10.44 7.75 -10.98 -0.09 10.35 16 8 O -0.54 -12.51 15.93 -14.35 -0.23 -12.74 16 9 N -0.58 -10.62 2.47 -176.94 -0.44 -11.06 16 10 C 0.13 2.23 5.70 -5.91 -0.03 2.19 16 11 C -0.17 -3.11 5.64 -29.13 -0.16 -3.27 16 12 C 0.16 3.24 5.63 -5.24 -0.03 3.22 16 13 N -0.59 -14.00 2.54 -172.27 -0.44 -14.44 16 14 C -0.25 -6.72 9.27 -15.06 -0.14 -6.86 16 15 H 0.07 1.77 7.87 -52.49 -0.41 1.36 16 16 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 17 N -0.91 -25.19 10.90 55.49 0.60 -24.59 16 18 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.16 3.52 5.17 -1.98 -0.01 3.51 16 23 C 0.08 1.30 5.01 -4.81 -0.02 1.27 16 24 H 0.10 0.94 7.84 -52.49 -0.41 0.52 16 25 H 0.10 0.78 8.06 -52.48 -0.42 0.36 16 26 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 27 H 0.08 0.99 7.79 -51.93 -0.40 0.58 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.58 7.32 -51.93 -0.38 1.20 16 32 H 0.07 1.00 7.37 -51.93 -0.38 0.61 16 33 H 0.06 0.87 8.06 -51.92 -0.42 0.46 16 34 H 0.08 1.35 7.12 -51.93 -0.37 0.98 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.50 7.91 -51.93 -0.41 1.09 16 37 H 0.03 0.61 7.58 -51.93 -0.39 0.22 16 38 H 0.05 0.95 8.02 -51.93 -0.42 0.53 16 39 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.04 1.00 8.00 -51.93 -0.42 0.59 16 41 H 0.08 1.83 5.72 -51.93 -0.30 1.53 16 42 H 0.06 0.91 6.38 -51.93 -0.33 0.58 16 43 H 0.06 0.96 7.73 -51.93 -0.40 0.56 16 LS Contribution 344.19 15.07 5.19 5.19 Total: -1.00 -31.75 344.19 -8.27 -40.02 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.12 Total: -0.10 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -0.27 Total: 7.94 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.27 Total: -50.08 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.77 Total: -19.78 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.75 -8.27 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198315599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.771 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds