Wall clock time and date at job start Tue Mar 31 2020 02:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99923 * 2 1 4 4 C 1.52994 * 109.46953 * 124.99995 * 3 2 1 5 5 O 1.42902 * 109.46896 * 179.97438 * 4 3 2 6 6 C 1.42908 * 113.99683 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46928 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99794 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00130 * 180.02562 * 7 6 5 10 10 C 1.48208 * 119.97047 * 179.97438 * 9 7 6 11 11 C 1.47147 * 110.34111 * 102.46634 * 10 9 7 12 12 C 1.53794 * 111.83983 * 58.29653 * 11 10 9 13 13 N 1.43463 * 107.96167 * 281.67092 * 12 11 10 14 14 C 1.36940 * 118.93842 * 273.62815 * 13 12 11 15 15 H 1.07993 * 120.00295 * 24.96939 * 14 13 12 16 16 C 1.38810 * 119.99829 * 204.96370 * 14 13 12 17 17 N 1.31621 * 120.00139 * 14.64107 * 16 14 13 18 18 Si 1.86798 * 120.00112 * 194.63681 * 16 14 13 19 19 H 1.48502 * 109.47083 * 90.00197 * 18 16 14 20 20 H 1.48497 * 109.47317 * 209.99959 * 18 16 14 21 21 H 1.48501 * 109.47262 * 330.00660 * 18 16 14 22 22 C 1.48861 * 122.12187 * 93.65311 * 13 12 11 23 23 C 1.43616 * 119.96795 * 359.72406 * 9 7 6 24 24 H 1.08001 * 119.99922 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.00105 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99922 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47348 * 4.99880 * 3 2 1 28 28 H 1.09004 * 109.46724 * 245.00181 * 3 2 1 29 29 H 1.09003 * 109.46956 * 60.00226 * 4 3 2 30 30 H 1.08995 * 109.47591 * 299.99723 * 4 3 2 31 31 H 1.08994 * 109.47418 * 299.99822 * 6 5 4 32 32 H 1.08998 * 109.47006 * 60.00742 * 6 5 4 33 33 H 1.09007 * 109.32501 * 222.72971 * 10 9 7 34 34 H 1.09003 * 109.32909 * 342.37520 * 10 9 7 35 35 H 1.09006 * 109.00123 * 178.89957 * 11 10 9 36 36 H 1.08996 * 109.00682 * 297.76047 * 11 10 9 37 37 H 1.08994 * 109.76640 * 41.28653 * 12 11 10 38 38 H 1.09004 * 109.76457 * 162.00361 * 12 11 10 39 39 H 0.97000 * 120.00149 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.48255 * 80.57831 * 22 13 12 41 41 H 1.08992 * 109.48015 * 200.61540 * 22 13 12 42 42 H 1.08990 * 108.87899 * 31.47013 * 23 9 7 43 43 H 1.09001 * 108.87222 * 149.90785 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 8 3.7499 2.5704 1.1812 6 6 4.6895 2.6990 2.2503 7 6 5.3815 4.0342 2.1529 8 8 5.0983 4.8000 1.2560 9 7 6.3157 4.3770 3.0618 10 6 6.9963 5.6900 2.9650 11 6 6.4356 6.6304 3.9481 12 6 6.5651 6.0998 5.3858 13 7 5.5328 5.1252 5.5923 14 6 4.2956 5.5467 6.0006 15 1 3.9698 6.5535 5.7852 16 6 3.4601 4.6798 6.6914 17 7 3.9442 3.5690 7.2054 18 14 1.6486 5.0896 6.8917 19 1 0.8838 4.5223 5.7522 20 1 1.1471 4.5081 8.1627 21 1 1.4748 6.5641 6.9193 22 6 5.7635 3.6703 5.3774 23 6 6.6471 3.4717 4.1264 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9315 29 1 3.7400 0.5065 1.0920 30 1 2.4773 1.2356 2.1130 31 1 4.1664 2.6301 3.2041 32 1 5.4285 1.9007 2.1826 33 1 8.0613 5.5594 3.1574 34 1 6.8579 6.0951 1.9625 35 1 6.9640 7.5808 3.8715 36 1 5.3813 6.7917 3.7239 37 1 7.5422 5.6361 5.5210 38 1 6.4454 6.9201 6.0936 39 1 3.3604 2.9633 7.6884 40 1 6.2648 3.2491 6.2488 41 1 4.8072 3.1685 5.2302 42 1 6.5229 2.4489 3.7710 43 1 7.6900 3.6219 4.4051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198315599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:40 Heat of formation + Delta-G solvation = -49.770179 kcal Electronic energy + Delta-G solvation = -23307.569102 eV Core-core repulsion = 19967.743695 eV Total energy + Delta-G solvation = -3339.825407 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27093 -39.17806 -38.32196 -35.98374 -35.88482 -34.42066 -32.77654 -30.85359 -29.43260 -28.50730 -26.80505 -25.45042 -24.01050 -23.35397 -21.48527 -20.78175 -19.97447 -18.85117 -18.19576 -17.67362 -17.49723 -17.07129 -16.57892 -16.21135 -15.84548 -15.68402 -15.48857 -14.89649 -14.74568 -14.38398 -14.23836 -13.92339 -13.80968 -13.47765 -13.33003 -13.12225 -12.87438 -12.57028 -12.51364 -12.35312 -12.20324 -12.08189 -12.00679 -11.72213 -11.69522 -11.43171 -10.77137 -10.73324 -10.48855 -10.29088 -9.57213 -8.65166 -7.87134 -5.29179 1.30754 1.39243 1.43139 1.49139 1.55128 1.90368 2.48688 2.87737 3.26014 3.58252 3.73620 3.95515 4.02009 4.12691 4.14741 4.20705 4.24444 4.31458 4.34144 4.42942 4.43596 4.52534 4.59899 4.74047 4.83384 4.87095 4.93793 4.98891 5.05528 5.07059 5.25282 5.29433 5.49338 5.60331 5.69122 5.71847 5.79224 5.84060 6.05307 6.39315 6.50781 7.17627 7.20589 7.96028 8.32299 9.16984 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.005956 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.181345 B = 4700.372514 C = 6196.293196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C -0.091 4.091 4 C 0.060 3.940 5 O -0.396 6.396 6 C 0.052 3.948 7 C 0.512 3.488 8 O -0.581 6.581 9 N -0.582 5.582 10 C 0.128 3.872 11 C -0.157 4.157 12 C 0.158 3.842 13 N -0.607 5.607 14 C -0.258 4.258 15 H 0.050 0.950 16 C -0.038 4.038 17 N -0.927 5.927 18 Si 0.945 3.055 19 H -0.293 1.293 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.168 3.832 23 C 0.086 3.914 24 H 0.091 0.909 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.023 0.977 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.250 0.750 40 H 0.028 0.972 41 H 0.043 0.957 42 H 0.095 0.905 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 -7.647 -9.997 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.176 4.176 3 C -0.129 4.129 4 C -0.016 4.016 5 O -0.315 6.315 6 C -0.027 4.027 7 C 0.301 3.699 8 O -0.461 6.461 9 N -0.314 5.314 10 C 0.007 3.993 11 C -0.197 4.197 12 C 0.031 3.969 13 N -0.329 5.329 14 C -0.389 4.389 15 H 0.068 0.932 16 C -0.233 4.233 17 N -0.573 5.573 18 Si 0.775 3.225 19 H -0.220 1.220 20 H -0.214 1.214 21 H -0.203 1.203 22 C 0.043 3.957 23 C -0.039 4.039 24 H 0.110 0.890 25 H 0.136 0.864 26 H 0.148 0.852 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.113 0.887 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.179 -7.221 -10.490 13.403 hybrid contribution -1.456 0.252 0.755 1.659 sum 2.723 -6.969 -9.735 12.278 Atomic orbital electron populations 1.24092 0.95968 1.02713 0.99898 1.22844 0.96176 0.97653 1.00926 1.20628 0.97598 0.96553 0.98079 1.22683 0.94515 0.85559 0.98870 1.87920 1.55123 1.39558 1.48886 1.22277 0.93336 0.95664 0.91463 1.20630 0.79211 0.88693 0.81411 1.90612 1.64325 1.54349 1.36827 1.47460 1.38802 1.18943 1.26188 1.20702 0.96876 0.82188 0.99547 1.21709 0.99999 0.99601 0.98430 1.20449 0.91549 0.91754 0.93115 1.43904 1.08507 1.02675 1.77858 1.19334 0.93301 0.98104 1.28119 0.93248 1.25426 1.01342 0.98368 0.98205 1.70108 1.34435 1.13641 1.39157 0.85599 0.82491 0.77734 0.76670 1.22043 1.21442 1.20315 1.21706 0.97465 0.83665 0.92868 1.22071 1.00807 0.93384 0.87636 0.89014 0.86439 0.85249 0.92209 0.89897 0.90515 0.93499 0.90806 0.86937 0.87805 0.91191 0.89438 0.95849 0.91911 0.94660 0.94064 0.95421 0.93828 0.88692 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.37 14.32 67.78 0.97 -2.40 16 2 C -0.16 -2.95 9.52 25.64 0.24 -2.70 16 3 C -0.09 -2.15 6.03 29.84 0.18 -1.97 16 4 C 0.06 1.56 5.92 71.98 0.43 1.99 16 5 O -0.40 -13.95 9.88 -129.94 -1.28 -15.24 16 6 C 0.05 1.72 4.97 71.24 0.35 2.07 16 7 C 0.51 20.05 7.75 87.66 0.68 20.73 16 8 O -0.58 -27.23 15.93 16.00 0.25 -26.98 16 9 N -0.58 -19.98 2.47 -832.10 -2.05 -22.03 16 10 C 0.13 3.98 5.70 84.23 0.48 4.46 16 11 C -0.16 -5.45 5.64 29.04 0.16 -5.29 16 12 C 0.16 6.08 5.63 87.21 0.49 6.58 16 13 N -0.61 -28.60 2.54 -698.94 -1.77 -30.38 16 14 C -0.26 -14.10 9.27 84.03 0.78 -13.32 16 15 H 0.05 2.79 7.87 -2.91 -0.02 2.77 16 16 C -0.04 -2.07 4.95 84.86 0.42 -1.65 16 17 N -0.93 -51.88 10.90 21.65 0.24 -51.64 16 18 Si 0.95 45.65 29.58 68.60 2.03 47.68 16 19 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 C 0.17 7.15 5.17 86.41 0.45 7.60 16 23 C 0.09 2.63 5.01 87.40 0.44 3.07 16 24 H 0.09 1.71 7.84 -2.91 -0.02 1.69 16 25 H 0.12 1.61 8.06 -2.91 -0.02 1.59 16 26 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 27 H 0.06 1.58 7.79 -2.39 -0.02 1.56 16 28 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 2.66 7.32 -2.39 -0.02 2.64 16 32 H 0.11 2.75 7.37 -2.39 -0.02 2.73 16 33 H 0.10 2.42 8.06 -2.38 -0.02 2.41 16 34 H 0.07 2.33 7.12 -2.39 -0.02 2.31 16 35 H 0.09 2.48 8.14 -2.38 -0.02 2.47 16 36 H 0.02 1.01 7.91 -2.39 -0.02 0.99 16 37 H 0.06 2.06 7.58 -2.39 -0.02 2.04 16 38 H 0.04 1.41 8.02 -2.38 -0.02 1.40 16 39 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 40 H 0.03 1.26 8.00 -2.39 -0.02 1.24 16 41 H 0.04 2.12 5.72 -2.39 -0.01 2.10 16 42 H 0.09 2.36 6.38 -2.39 -0.02 2.34 16 43 H 0.10 2.41 7.73 -2.39 -0.02 2.39 16 Total: -1.00 -70.88 344.19 4.45 -66.43 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.97 Total: 12.99 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 6.07 Total: 19.16 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -3.59 Total: -104.05 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -1.03 Total: -42.22 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.88 4.45 -66.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198315599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.658 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds