Wall clock time and date at job start Tue Mar 31 2020 02:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50704 * 120.00078 * 2 1 4 4 C 1.32992 * 119.99778 * 179.97438 * 2 1 3 5 5 C 1.47102 * 119.99976 * 172.41615 * 4 2 1 6 6 O 1.21614 * 119.99694 * 352.72808 * 5 4 2 7 7 N 1.34776 * 119.99996 * 172.72758 * 5 4 2 8 8 C 1.47509 * 118.75671 * 4.26167 * 7 5 4 9 9 C 1.53206 * 111.23655 * 221.51347 * 8 7 5 10 10 C 1.51537 * 109.42876 * 40.26010 * 9 8 7 11 11 O 1.42156 * 108.76777 * 268.50680 * 10 9 8 12 12 C 1.38003 * 119.43644 * 87.22090 * 11 10 9 13 13 H 1.09000 * 109.47110 * 56.57718 * 12 11 10 14 14 C 1.52995 * 109.47104 * 176.56851 * 12 11 10 15 15 N 1.46505 * 109.47119 * 300.01045 * 14 12 11 16 16 C 1.36937 * 119.99950 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00021 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99814 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99796 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99732 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47344 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.46949 * 120.00355 * 20 18 16 23 23 H 1.48505 * 109.46769 * 240.00192 * 20 18 16 24 24 C 1.45118 * 118.75416 * 184.53013 * 7 5 4 25 25 H 1.08988 * 109.47545 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47140 * 300.00919 * 1 2 3 27 27 H 1.09008 * 109.46898 * 59.99843 * 1 2 3 28 28 H 1.08998 * 109.46862 * 264.48961 * 3 2 1 29 29 H 1.08996 * 109.47276 * 24.49046 * 3 2 1 30 30 H 1.08998 * 109.46874 * 144.49157 * 3 2 1 31 31 H 1.07999 * 120.00242 * 352.69822 * 4 2 1 32 32 H 1.09000 * 109.16365 * 342.02897 * 8 7 5 33 33 H 1.08990 * 109.16750 * 101.23168 * 8 7 5 34 34 H 1.09002 * 109.60847 * 280.23085 * 9 8 7 35 35 H 1.08998 * 109.42992 * 160.19439 * 9 8 7 36 36 H 1.09002 * 109.58455 * 148.72434 * 10 9 8 37 37 H 1.08993 * 109.59006 * 28.29721 * 10 9 8 38 38 H 1.08998 * 109.47422 * 60.01114 * 14 12 11 39 39 H 1.09002 * 109.47950 * 180.02562 * 14 12 11 40 40 H 0.96999 * 119.99483 * 0.02562 * 15 14 12 41 41 H 0.97006 * 119.99690 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.46048 * 210.72130 * 24 7 5 43 43 H 1.09002 * 109.46582 * 330.68427 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 3.6333 -1.1575 -0.1676 6 8 4.2182 -0.1262 -0.4387 7 7 4.3240 -2.3055 -0.0213 8 6 3.5791 -3.5569 0.2132 9 6 4.2669 -4.4217 1.2744 10 6 4.7810 -3.5356 2.3910 11 8 6.1200 -3.1596 2.0968 12 6 6.3562 -2.0420 1.3224 13 1 5.8797 -1.1753 1.7805 14 6 7.8636 -1.8009 1.2212 15 7 8.4158 -1.5918 2.5620 16 6 9.7553 -1.3562 2.7217 17 1 10.4045 -1.3241 1.8593 18 6 10.2786 -1.1587 3.9922 19 7 9.4874 -1.1983 5.0433 20 14 12.1057 -0.8366 4.2100 21 1 12.7711 -0.8425 2.8825 22 1 12.3015 0.4858 4.8566 23 1 12.6969 -1.8977 5.0643 24 6 5.7727 -2.2628 -0.0944 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.5277 1.5704 -1.0229 29 1 1.6324 2.0874 0.4260 30 1 3.1667 1.2015 0.5969 31 1 1.6385 -2.0832 0.1198 32 1 2.5701 -3.3154 0.5475 33 1 3.5213 -4.1189 -0.7189 34 1 5.1016 -4.9588 0.8238 35 1 3.5510 -5.1371 1.6789 36 1 4.7537 -4.0825 3.3335 37 1 4.1590 -2.6437 2.4655 38 1 8.3403 -2.6674 0.7631 39 1 8.0502 -0.9179 0.6100 40 1 7.8327 -1.6210 3.3366 41 1 9.8530 -1.0599 5.9311 42 1 6.1439 -3.2052 -0.4971 43 1 6.0796 -1.4440 -0.7452 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199779561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:27 Heat of formation + Delta-G solvation = -42.035588 kcal Electronic energy + Delta-G solvation = -23045.867714 eV Core-core repulsion = 19706.377704 eV Total energy + Delta-G solvation = -3339.490010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56975 -38.63305 -35.86273 -35.42808 -34.49284 -32.79287 -30.86300 -29.53206 -28.04726 -27.66382 -26.47561 -24.91424 -22.81068 -21.70055 -20.90232 -20.16400 -18.11560 -17.50926 -17.08913 -16.44461 -16.14886 -15.67729 -15.01803 -14.68598 -14.33575 -14.18060 -14.10982 -13.67107 -13.45520 -13.15885 -13.00839 -12.72849 -12.47740 -12.43313 -12.29005 -12.03662 -11.85950 -11.76072 -11.45976 -11.16587 -10.90409 -10.76265 -10.71761 -10.18859 -9.93485 -9.65059 -9.50510 -9.34482 -9.27351 -8.79023 -8.41365 -6.79718 -5.65328 -2.93144 1.23494 2.97676 3.25259 3.50445 3.55443 3.58144 4.02658 4.38633 4.56894 4.65011 4.70124 4.76203 4.93275 5.01108 5.17733 5.20567 5.30757 5.37882 5.42035 5.51228 5.52505 5.55590 5.58628 5.66453 5.69150 5.74399 5.89601 5.95273 6.04995 6.06540 6.16250 6.33354 6.39271 6.40280 6.63429 6.72124 6.84572 7.35187 7.79198 8.07507 8.22847 8.53096 9.64623 10.23621 10.59913 11.57732 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022313 B = 0.003921 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.573005 B = 7139.124942 C = 7721.039867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.032 4.032 3 C -0.126 4.126 4 C -0.241 4.241 5 C 0.539 3.461 6 O -0.534 6.534 7 N -0.608 5.608 8 C 0.105 3.895 9 C -0.167 4.167 10 C 0.074 3.926 11 O -0.368 6.368 12 C 0.090 3.910 13 H 0.049 0.951 14 C 0.166 3.834 15 N -0.726 5.726 16 C -0.235 4.235 17 H 0.071 0.929 18 C -0.016 4.016 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.081 3.919 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.026 0.974 39 H 0.034 0.966 40 H 0.387 0.613 41 H 0.253 0.747 42 H 0.081 0.919 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.114 -3.901 -11.260 24.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.034 4.034 3 C -0.182 4.182 4 C -0.262 4.262 5 C 0.330 3.670 6 O -0.413 6.413 7 N -0.341 5.341 8 C -0.017 4.017 9 C -0.206 4.206 10 C -0.003 4.003 11 O -0.286 6.286 12 C 0.029 3.971 13 H 0.067 0.933 14 C 0.038 3.962 15 N -0.370 5.370 16 C -0.367 4.367 17 H 0.089 0.911 18 C -0.212 4.212 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.043 4.043 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.146 0.854 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.221 0.779 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.463 -3.468 -11.397 23.679 hybrid contribution 0.441 0.032 0.341 0.558 sum -20.023 -3.435 -11.056 23.129 Atomic orbital electron populations 1.21010 0.91224 1.03063 1.02959 1.22598 0.95816 0.95618 0.89330 1.21134 1.00361 0.92987 1.03691 1.22536 0.93543 0.98812 1.11298 1.18664 0.87955 0.83161 0.77170 1.90778 1.71434 1.31269 1.47786 1.47797 1.06828 1.07686 1.71781 1.21964 0.95683 0.85031 0.99023 1.22458 1.01720 0.98997 0.97398 1.22110 0.84039 0.97273 0.96902 1.86432 1.25694 1.46048 1.70396 1.22265 0.97806 0.87889 0.89092 0.93272 1.20617 0.87611 0.97799 0.90199 1.42225 1.06695 1.86099 1.01963 1.19292 0.84716 1.40140 0.92530 0.91142 1.24736 0.97793 1.03116 0.95510 1.69695 1.33723 1.57070 0.97636 0.86109 0.85252 0.77360 0.77457 1.20573 1.21957 1.21955 1.22396 0.78713 1.03659 0.99490 0.91505 0.90639 0.90400 0.90272 0.92670 0.89154 0.85449 0.89700 0.91719 0.89982 0.89781 0.89358 0.93496 0.95608 0.94798 0.77883 0.93711 0.90065 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 10.10 36.01 0.36 -0.45 16 2 C -0.03 -0.32 6.11 -101.16 -0.62 -0.93 16 3 C -0.13 -1.42 8.47 36.01 0.30 -1.12 16 4 C -0.24 -2.59 8.80 -37.81 -0.33 -2.92 16 5 C 0.54 7.66 7.40 -12.66 -0.09 7.56 16 6 O -0.53 -9.29 12.74 5.27 0.07 -9.22 16 7 N -0.61 -8.00 2.20 -174.09 -0.38 -8.38 16 8 C 0.11 1.00 6.01 -3.38 -0.02 0.98 16 9 C -0.17 -1.70 5.78 -27.36 -0.16 -1.86 16 10 C 0.07 1.02 6.37 36.42 0.23 1.25 16 11 O -0.37 -6.84 9.18 -26.49 -0.24 -7.08 16 12 C 0.09 1.67 2.73 -25.78 -0.07 1.60 16 13 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.17 3.66 5.95 -4.04 -0.02 3.63 16 15 N -0.73 -19.88 5.49 -59.91 -0.33 -20.21 16 16 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 17 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 19 N -0.93 -29.46 13.06 55.49 0.72 -28.73 16 20 Si 0.91 23.24 29.55 -169.99 -5.02 18.22 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 C 0.08 1.23 4.90 -3.83 -0.02 1.21 16 25 H 0.07 0.35 7.82 -51.94 -0.41 -0.05 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.08 0.93 8.02 -51.93 -0.42 0.51 16 29 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.09 1.29 6.21 -51.93 -0.32 0.97 16 31 H 0.13 1.01 5.74 -52.49 -0.30 0.71 16 32 H 0.08 0.64 5.30 -51.93 -0.28 0.37 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.92 8.01 -51.93 -0.42 0.51 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.66 7.39 -51.93 -0.38 0.27 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.39 11.29 7.53 -40.82 -0.31 10.98 16 41 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.08 1.13 8.12 -51.93 -0.42 0.70 16 43 H 0.09 1.51 7.21 -51.93 -0.37 1.14 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -34.78 342.35 -7.68 -42.46 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.97 Total: 6.51 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.68 Total: 1.29 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.01 Total: -57.33 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.18 Total: -16.30 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.78 -7.68 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199779561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.423 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds