Wall clock time and date at job start Tue Mar 31 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 115.55338 * 2 1 4 4 C 1.53000 * 117.49497 * 214.32942 * 2 1 3 5 5 C 1.52998 * 60.00029 * 252.51125 * 4 2 1 6 6 H 1.09006 * 117.49488 * 107.49535 * 5 4 2 7 7 C 1.50693 * 117.49998 * 252.51065 * 5 4 2 8 8 O 1.21278 * 120.00540 * 68.62448 * 7 5 4 9 9 N 1.34779 * 120.00228 * 248.62453 * 7 5 4 10 10 C 1.47513 * 118.75750 * 0.02562 * 9 7 5 11 11 C 1.53571 * 111.03336 * 138.34958 * 10 9 7 12 12 C 1.51545 * 109.57974 * 320.02696 * 11 10 9 13 13 O 1.42149 * 108.75542 * 91.39565 * 12 11 10 14 14 C 1.38011 * 119.44198 * 272.76814 * 13 12 11 15 15 H 1.09003 * 109.47065 * 303.43438 * 14 13 12 16 16 C 1.53000 * 109.47253 * 183.43768 * 14 13 12 17 17 N 1.46499 * 109.47102 * 65.00221 * 16 14 13 18 18 C 1.36936 * 119.99884 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00276 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00096 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99803 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00352 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47105 * 90.00058 * 22 20 18 24 24 H 1.48493 * 109.47342 * 210.00597 * 22 20 18 25 25 H 1.48504 * 109.46648 * 330.00501 * 22 20 18 26 26 C 1.45121 * 118.76049 * 179.72974 * 9 7 5 27 27 H 1.08997 * 109.47438 * 154.27656 * 1 2 3 28 28 H 1.09002 * 109.46800 * 274.27656 * 1 2 3 29 29 H 1.08994 * 109.46790 * 34.27328 * 1 2 3 30 30 H 1.08999 * 117.50120 * 0.02562 * 4 2 1 31 31 H 1.09004 * 117.49761 * 144.99908 * 4 2 1 32 32 H 1.08997 * 109.17002 * 258.75443 * 10 9 7 33 33 H 1.09003 * 109.16410 * 17.95118 * 10 9 7 34 34 H 1.09003 * 109.45006 * 80.05219 * 11 10 9 35 35 H 1.09000 * 109.45446 * 199.99412 * 11 10 9 36 36 H 1.08999 * 109.58825 * 211.17948 * 12 11 10 37 37 H 1.08997 * 109.58572 * 331.61332 * 12 11 10 38 38 H 1.09005 * 109.47307 * 185.00179 * 16 14 13 39 39 H 1.08997 * 109.46998 * 305.00075 * 16 14 13 40 40 H 0.96994 * 119.99984 * 359.97438 * 17 16 14 41 41 H 0.97005 * 120.00236 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.45661 * 29.33183 * 26 9 7 43 43 H 1.09002 * 109.46009 * 149.28643 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1208 -0.7654 5 6 2.2365 -1.1213 0.7646 6 1 1.6112 -1.8590 1.2676 7 6 3.5292 -0.7817 1.4605 8 8 3.9719 0.3458 1.4014 9 7 4.1937 -1.7311 2.1487 10 6 3.6310 -3.0937 2.2023 11 6 4.7320 -4.1516 2.0379 12 6 5.7232 -3.6940 0.9870 13 8 6.7680 -2.9733 1.6271 14 6 6.6228 -1.6183 1.8449 15 1 6.4297 -1.1165 0.8967 16 6 7.9058 -1.0610 2.4648 17 7 9.0053 -1.1835 1.5044 18 6 10.2594 -0.7480 1.8402 19 1 10.4379 -0.3138 2.8129 20 6 11.3013 -0.8645 0.9304 21 7 11.0837 -1.3931 -0.2551 22 14 13.0120 -0.2698 1.3882 23 1 13.7693 -1.3799 2.0201 24 1 13.7230 0.1813 0.1651 25 1 12.9033 0.8620 2.3435 26 6 5.4391 -1.3760 2.8036 27 1 -0.3634 -0.9258 -0.4460 28 1 -0.3633 0.0766 1.0248 29 1 -0.3633 0.8492 -0.5787 30 1 1.6112 -1.8578 -1.2693 31 1 3.1713 -0.8747 -1.2689 32 1 3.1356 -3.2388 3.1623 33 1 2.9000 -3.2106 1.4022 34 1 5.2480 -4.2890 2.9882 35 1 4.2846 -5.0960 1.7282 36 1 6.1385 -4.5614 0.4740 37 1 5.2206 -3.0474 0.2676 38 1 7.7604 -0.0109 2.7186 39 1 8.1472 -1.6228 3.3670 40 1 8.8451 -1.5737 0.6310 41 1 11.8117 -1.4742 -0.8910 42 1 5.4145 -0.3230 3.0839 43 1 5.5663 -1.9867 3.6975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201155142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:01 Heat of formation + Delta-G solvation = -37.444413 kcal Electronic energy + Delta-G solvation = -23074.516217 eV Core-core repulsion = 19735.225296 eV Total energy + Delta-G solvation = -3339.290921 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71550 -38.85921 -36.89417 -35.61111 -34.55416 -32.83023 -30.87616 -29.54795 -28.53888 -26.77809 -25.42816 -23.80212 -22.30519 -21.62940 -21.04864 -20.78774 -18.85361 -17.72603 -17.09222 -16.50693 -16.34952 -15.64876 -15.36116 -14.91047 -14.36225 -14.23564 -13.88778 -13.68107 -13.47042 -13.26285 -13.02317 -12.89199 -12.54713 -12.29246 -12.28290 -11.98449 -11.67738 -11.61527 -11.30770 -10.94122 -10.77412 -10.75295 -10.60321 -10.29361 -10.20860 -10.00541 -9.75075 -9.62263 -9.36650 -8.79600 -8.52643 -6.81161 -5.66084 -2.94164 2.40253 2.83718 3.50423 3.54743 3.56997 3.59767 3.99157 4.21324 4.49930 4.53153 4.62103 4.67403 4.76305 4.83538 4.97775 5.05471 5.24853 5.29939 5.38180 5.40553 5.44159 5.47403 5.49369 5.54566 5.63328 5.67209 5.71902 5.77055 5.87568 6.00226 6.02889 6.07067 6.13657 6.37461 6.54783 6.70374 6.82620 7.24751 7.77924 8.04324 8.14264 8.52186 9.63597 10.22090 10.58127 11.56943 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.003832 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.000853 B = 7304.683751 C = 7762.655961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.123 4.123 3 H 0.118 0.882 4 C -0.148 4.148 5 C -0.193 4.193 6 H 0.123 0.877 7 C 0.536 3.464 8 O -0.532 6.532 9 N -0.606 5.606 10 C 0.107 3.893 11 C -0.167 4.167 12 C 0.074 3.926 13 O -0.369 6.369 14 C 0.089 3.911 15 H 0.051 0.949 16 C 0.166 3.834 17 N -0.726 5.726 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.081 3.919 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.027 0.973 40 H 0.387 0.613 41 H 0.254 0.746 42 H 0.093 0.907 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.923 -5.059 2.495 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 H 0.136 0.864 4 C -0.186 4.186 5 C -0.214 4.214 6 H 0.140 0.860 7 C 0.324 3.676 8 O -0.408 6.408 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.205 4.205 12 C -0.003 4.003 13 O -0.287 6.287 14 C 0.029 3.971 15 H 0.069 0.931 16 C 0.038 3.962 17 N -0.370 5.370 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.043 4.043 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.220 0.780 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.386 -4.476 2.642 23.957 hybrid contribution 0.621 0.063 -0.049 0.626 sum -22.765 -4.413 2.593 23.333 Atomic orbital electron populations 1.21393 0.92259 1.02191 1.02095 1.22389 0.95122 0.95233 1.01436 0.86441 1.23117 1.03315 1.01529 0.90624 1.22344 0.97914 1.05225 0.95911 0.85963 1.19796 0.84753 0.84666 0.78428 1.90722 1.68613 1.20994 1.60506 1.47841 1.23531 1.10045 1.52511 1.21997 0.96224 0.81126 1.02239 1.22510 0.97425 0.98272 1.02280 1.22105 0.88726 0.95933 0.93553 1.86429 1.42698 1.20991 1.78589 1.22158 0.95229 0.82192 0.97499 0.93132 1.20608 0.85613 0.96644 0.93338 1.42227 1.04841 1.74375 1.15574 1.19239 0.85935 1.32540 0.99067 0.91175 1.24735 0.98094 1.01966 0.96309 1.69679 1.31440 1.50568 1.06479 0.86176 0.84704 0.78245 0.77002 1.21786 1.21839 1.20774 1.22310 0.82835 1.02848 0.96287 0.92404 0.92031 0.91648 0.87759 0.88112 0.91627 0.89752 0.89990 0.89732 0.89323 0.93487 0.94778 0.95487 0.77965 0.93635 0.88901 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.19 37.16 0.38 -0.46 16 2 C -0.12 -1.18 5.92 -90.62 -0.54 -1.72 16 3 H 0.12 1.37 7.67 -51.93 -0.40 0.98 16 4 C -0.15 -1.35 9.88 -26.73 -0.26 -1.61 16 5 C -0.19 -1.92 4.47 -91.78 -0.41 -2.34 16 6 H 0.12 0.92 6.94 -51.93 -0.36 0.56 16 7 C 0.54 7.52 7.41 -10.99 -0.08 7.44 16 8 O -0.53 -9.70 15.68 5.56 0.09 -9.62 16 9 N -0.61 -7.80 2.20 -172.83 -0.38 -8.18 16 10 C 0.11 0.97 5.88 -3.19 -0.02 0.95 16 11 C -0.17 -1.63 5.78 -27.17 -0.16 -1.79 16 12 C 0.07 1.00 6.38 36.42 0.23 1.23 16 13 O -0.37 -6.76 9.38 -26.52 -0.25 -7.00 16 14 C 0.09 1.66 2.67 -26.09 -0.07 1.59 16 15 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 16 C 0.17 3.66 5.92 -4.04 -0.02 3.63 16 17 N -0.73 -19.90 5.54 -59.91 -0.33 -20.23 16 18 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 19 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -29.48 13.06 55.49 0.72 -28.75 16 22 Si 0.91 23.24 29.55 -169.99 -5.02 18.22 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.08 1.21 4.82 -4.14 -0.02 1.19 16 27 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.61 5.85 -51.93 -0.30 0.30 16 34 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.64 7.40 -51.93 -0.38 0.26 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.39 11.26 7.65 -40.82 -0.31 10.95 16 41 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.09 1.50 7.26 -51.93 -0.38 1.12 16 43 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -35.08 345.81 -8.33 -43.41 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.15 Total: 6.51 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.22 Total: 0.43 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.01 Total: -57.16 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.16 Total: -16.62 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.08 -8.33 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201155142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.964 kcal (2) G-P(sol) polarization free energy of solvation -35.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds