Wall clock time and date at job start Tue Mar 31 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 115.55338 * 2 1 4 4 C 1.53000 * 117.49497 * 214.32942 * 2 1 3 5 5 C 1.52998 * 60.00029 * 252.51125 * 4 2 1 6 6 H 1.09006 * 117.49488 * 107.49535 * 5 4 2 7 7 C 1.50693 * 117.49998 * 252.51065 * 5 4 2 8 8 O 1.21278 * 120.00540 * 68.62448 * 7 5 4 9 9 N 1.34779 * 120.00228 * 248.62453 * 7 5 4 10 10 C 1.47513 * 118.75750 * 0.02562 * 9 7 5 11 11 C 1.53571 * 111.03336 * 138.34958 * 10 9 7 12 12 C 1.51545 * 109.57974 * 320.02696 * 11 10 9 13 13 O 1.42149 * 108.75542 * 91.39565 * 12 11 10 14 14 C 1.38011 * 119.44198 * 272.76814 * 13 12 11 15 15 H 1.09003 * 109.47065 * 303.43438 * 14 13 12 16 16 C 1.53000 * 109.47253 * 183.43768 * 14 13 12 17 17 N 1.46499 * 109.47102 * 65.00221 * 16 14 13 18 18 C 1.36936 * 119.99884 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00276 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00096 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99803 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00352 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47105 * 90.00058 * 22 20 18 24 24 H 1.48493 * 109.47342 * 210.00597 * 22 20 18 25 25 H 1.48504 * 109.46648 * 330.00501 * 22 20 18 26 26 C 1.45121 * 118.76049 * 179.72974 * 9 7 5 27 27 H 1.08997 * 109.47438 * 154.27656 * 1 2 3 28 28 H 1.09002 * 109.46800 * 274.27656 * 1 2 3 29 29 H 1.08994 * 109.46790 * 34.27328 * 1 2 3 30 30 H 1.08999 * 117.50120 * 0.02562 * 4 2 1 31 31 H 1.09004 * 117.49761 * 144.99908 * 4 2 1 32 32 H 1.08997 * 109.17002 * 258.75443 * 10 9 7 33 33 H 1.09003 * 109.16410 * 17.95118 * 10 9 7 34 34 H 1.09003 * 109.45006 * 80.05219 * 11 10 9 35 35 H 1.09000 * 109.45446 * 199.99412 * 11 10 9 36 36 H 1.08999 * 109.58825 * 211.17948 * 12 11 10 37 37 H 1.08997 * 109.58572 * 331.61332 * 12 11 10 38 38 H 1.09005 * 109.47307 * 185.00179 * 16 14 13 39 39 H 1.08997 * 109.46998 * 305.00075 * 16 14 13 40 40 H 0.96994 * 119.99984 * 359.97438 * 17 16 14 41 41 H 0.97005 * 120.00236 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.45661 * 29.33183 * 26 9 7 43 43 H 1.09002 * 109.46009 * 149.28643 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1208 -0.7654 5 6 2.2365 -1.1213 0.7646 6 1 1.6112 -1.8590 1.2676 7 6 3.5292 -0.7817 1.4605 8 8 3.9719 0.3458 1.4014 9 7 4.1937 -1.7311 2.1487 10 6 3.6310 -3.0937 2.2023 11 6 4.7320 -4.1516 2.0379 12 6 5.7232 -3.6940 0.9870 13 8 6.7680 -2.9733 1.6271 14 6 6.6228 -1.6183 1.8449 15 1 6.4297 -1.1165 0.8967 16 6 7.9058 -1.0610 2.4648 17 7 9.0053 -1.1835 1.5044 18 6 10.2594 -0.7480 1.8402 19 1 10.4379 -0.3138 2.8129 20 6 11.3013 -0.8645 0.9304 21 7 11.0837 -1.3931 -0.2551 22 14 13.0120 -0.2698 1.3882 23 1 13.7693 -1.3799 2.0201 24 1 13.7230 0.1813 0.1651 25 1 12.9033 0.8620 2.3435 26 6 5.4391 -1.3760 2.8036 27 1 -0.3634 -0.9258 -0.4460 28 1 -0.3633 0.0766 1.0248 29 1 -0.3633 0.8492 -0.5787 30 1 1.6112 -1.8578 -1.2693 31 1 3.1713 -0.8747 -1.2689 32 1 3.1356 -3.2388 3.1623 33 1 2.9000 -3.2106 1.4022 34 1 5.2480 -4.2890 2.9882 35 1 4.2846 -5.0960 1.7282 36 1 6.1385 -4.5614 0.4740 37 1 5.2206 -3.0474 0.2676 38 1 7.7604 -0.0109 2.7186 39 1 8.1472 -1.6228 3.3670 40 1 8.8451 -1.5737 0.6310 41 1 11.8117 -1.4742 -0.8910 42 1 5.4145 -0.3230 3.0839 43 1 5.5663 -1.9867 3.6975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201155142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:01 Heat of formation + Delta-G solvation = -61.327094 kcal Electronic energy + Delta-G solvation = -23075.551848 eV Core-core repulsion = 19735.225296 eV Total energy + Delta-G solvation = -3340.326552 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.80999 -40.04859 -37.79863 -36.94042 -36.26590 -34.35232 -32.69010 -30.69734 -29.51907 -28.00372 -26.78656 -25.32708 -23.79989 -22.73172 -22.33819 -21.65188 -19.81980 -19.29209 -18.68238 -17.78928 -17.60637 -16.87859 -16.61254 -16.27868 -15.96995 -15.19051 -15.12851 -14.88023 -14.86635 -14.63315 -14.18351 -13.96846 -13.78864 -13.54876 -13.31053 -13.13769 -12.95774 -12.77776 -12.65386 -12.35524 -12.31385 -12.13513 -12.02478 -11.84596 -11.51433 -11.36393 -11.00501 -10.98829 -10.82895 -10.58821 -9.68844 -9.04544 -7.96148 -5.26623 1.37125 1.45295 1.48902 1.57306 1.85684 2.54764 2.68942 2.81496 3.36990 3.38187 3.61344 3.73990 3.81204 3.85403 3.96816 4.03125 4.08269 4.13449 4.29899 4.34914 4.39873 4.44221 4.50272 4.65748 4.72817 4.73461 4.84372 4.84761 4.85300 4.94522 5.02347 5.05662 5.11261 5.18213 5.21844 5.41133 5.44889 5.51221 6.23742 6.24905 6.71502 7.08140 7.30124 8.03303 8.29207 9.27852 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.003832 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.000853 B = 7304.683751 C = 7762.655961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.130 4.130 3 H 0.084 0.916 4 C -0.140 4.140 5 C -0.190 4.190 6 H 0.161 0.839 7 C 0.524 3.476 8 O -0.588 6.588 9 N -0.605 5.605 10 C 0.101 3.899 11 C -0.156 4.156 12 C 0.063 3.937 13 O -0.397 6.397 14 C 0.107 3.893 15 H 0.015 0.985 16 C 0.163 3.837 17 N -0.741 5.741 18 C -0.250 4.250 19 H 0.078 0.922 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.981 3.019 23 H -0.283 1.283 24 H -0.293 1.293 25 H -0.268 1.268 26 C 0.093 3.907 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.140 0.860 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.040 0.960 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.373 0.627 41 H 0.252 0.748 42 H 0.076 0.924 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.086 -6.822 3.505 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.149 4.149 3 H 0.102 0.898 4 C -0.178 4.178 5 C -0.210 4.210 6 H 0.179 0.821 7 C 0.314 3.686 8 O -0.469 6.469 9 N -0.336 5.336 10 C -0.020 4.020 11 C -0.194 4.194 12 C -0.012 4.012 13 O -0.317 6.317 14 C 0.047 3.953 15 H 0.033 0.967 16 C 0.036 3.964 17 N -0.383 5.383 18 C -0.382 4.382 19 H 0.096 0.904 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.809 3.191 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.193 1.193 26 C -0.032 4.032 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.158 0.842 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.141 0.859 36 H 0.114 0.886 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.204 0.796 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -25.595 -6.272 3.694 26.610 hybrid contribution 1.272 0.581 -0.387 1.451 sum -24.323 -5.691 3.307 25.198 Atomic orbital electron populations 1.21381 0.89599 1.03473 1.02737 1.22416 0.96984 0.93807 1.01708 0.89809 1.23189 1.02602 1.02001 0.89966 1.22417 0.96102 1.06304 0.96180 0.82148 1.20635 0.85933 0.84031 0.77953 1.90695 1.70291 1.23460 1.62440 1.47982 1.22339 1.11702 1.51590 1.22368 0.96310 0.78350 1.04959 1.22435 0.96525 1.00021 1.00380 1.22420 0.88720 0.95352 0.94745 1.86349 1.45523 1.20454 1.79329 1.21737 0.94842 0.82321 0.96411 0.96729 1.20748 0.85962 0.96949 0.92777 1.42431 1.05724 1.74254 1.15917 1.19693 0.86994 1.32096 0.99393 0.90380 1.25679 1.02409 1.02622 0.96296 1.69857 1.32548 1.52129 1.07630 0.85030 0.79229 0.78071 0.76744 1.21016 1.21992 1.19291 1.21988 0.82741 1.02392 0.96030 0.90251 0.91522 0.91414 0.84184 0.90834 0.88781 0.87010 0.90702 0.85908 0.88627 0.94148 0.94863 0.94740 0.79582 0.93947 0.90569 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.19 71.98 0.73 -0.53 16 2 C -0.13 -2.37 5.92 -10.79 -0.06 -2.44 16 3 H 0.08 2.10 7.67 -2.39 -0.02 2.08 16 4 C -0.14 -2.32 9.88 30.59 0.30 -2.01 16 5 C -0.19 -3.38 4.47 -11.54 -0.05 -3.43 16 6 H 0.16 1.62 6.94 -2.38 -0.02 1.60 16 7 C 0.52 14.67 7.41 87.65 0.65 15.32 16 8 O -0.59 -22.72 15.68 -3.02 -0.05 -22.77 16 9 N -0.60 -14.85 2.20 -819.12 -1.80 -16.65 16 10 C 0.10 1.44 5.88 86.38 0.51 1.95 16 11 C -0.16 -2.53 5.78 30.31 0.18 -2.35 16 12 C 0.06 1.65 6.38 71.51 0.46 2.11 16 13 O -0.40 -14.80 9.38 -117.81 -1.11 -15.90 16 14 C 0.11 4.15 2.67 31.01 0.08 4.23 16 15 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 16 C 0.16 7.43 5.92 86.38 0.51 7.94 16 17 N -0.74 -42.18 5.54 -343.46 -1.90 -44.09 16 18 C -0.25 -15.08 9.99 84.03 0.84 -14.24 16 19 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 20 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 21 N -0.97 -62.98 13.06 21.65 0.28 -62.69 16 22 Si 0.98 48.36 29.55 68.60 2.03 50.38 16 23 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 26 C 0.09 2.82 4.82 87.06 0.42 3.24 16 27 H 0.08 0.56 7.90 -2.39 -0.02 0.54 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.14 1.32 8.05 -2.39 -0.02 1.30 16 31 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 1.03 5.85 -2.39 -0.01 1.02 16 34 H 0.07 1.38 8.01 -2.39 -0.02 1.37 16 35 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.04 1.09 7.40 -2.39 -0.02 1.08 16 38 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.37 22.84 7.65 -92.71 -0.71 22.13 16 41 H 0.25 15.66 8.31 -92.70 -0.77 14.89 16 42 H 0.08 2.56 7.26 -2.39 -0.02 2.54 16 43 H 0.10 2.69 8.12 -2.39 -0.02 2.67 16 Total: -1.00 -80.74 345.81 2.76 -77.98 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.28 Total: 28.26 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 5.03 Total: 5.49 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -3.42 Total: -123.43 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -1.15 Total: -38.67 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.38 kcal Total: -80.74 2.76 -77.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201155142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.649 kcal (2) G-P(sol) polarization free energy of solvation -80.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds