Wall clock time and date at job start Tue Mar 31 2020 02:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 115.56076 * 2 1 4 4 C 1.53004 * 117.50055 * 145.68719 * 2 1 3 5 5 C 1.52998 * 60.03118 * 107.47737 * 4 2 1 6 6 H 1.09000 * 117.50004 * 252.52313 * 5 4 2 7 7 C 1.50707 * 117.49689 * 107.50280 * 5 4 2 8 8 O 1.21280 * 119.99915 * 285.60288 * 7 5 4 9 9 N 1.34774 * 119.99972 * 105.60557 * 7 5 4 10 10 C 1.47508 * 118.75889 * 185.38491 * 9 7 5 11 11 C 1.53567 * 111.03156 * 138.35207 * 10 9 7 12 12 C 1.51544 * 109.57943 * 320.02148 * 11 10 9 13 13 O 1.42146 * 108.75511 * 91.40022 * 12 11 10 14 14 C 1.38017 * 119.44246 * 272.76709 * 13 12 11 15 15 H 1.08998 * 109.46713 * 303.43430 * 14 13 12 16 16 C 1.53000 * 109.47073 * 183.43389 * 14 13 12 17 17 N 1.46499 * 109.46951 * 65.00293 * 16 14 13 18 18 C 1.36938 * 119.99573 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00215 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99789 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00109 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00031 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46898 * 90.00280 * 22 20 18 24 24 H 1.48499 * 109.47471 * 209.99899 * 22 20 18 25 25 H 1.48501 * 109.47142 * 330.00327 * 22 20 18 26 26 C 1.45124 * 118.75669 * 5.11361 * 9 7 5 27 27 H 1.08996 * 109.47136 * 325.70325 * 1 2 3 28 28 H 1.08994 * 109.47336 * 85.70603 * 1 2 3 29 29 H 1.09005 * 109.46995 * 205.70565 * 1 2 3 30 30 H 1.08997 * 117.49978 * 214.98287 * 4 2 1 31 31 H 1.09002 * 117.49659 * 359.97335 * 4 2 1 32 32 H 1.09006 * 109.16460 * 258.74935 * 10 9 7 33 33 H 1.09004 * 109.16636 * 17.99993 * 10 9 7 34 34 H 1.09000 * 109.45616 * 80.05405 * 11 10 9 35 35 H 1.09000 * 109.45394 * 200.01821 * 11 10 9 36 36 H 1.08996 * 109.58652 * 211.18416 * 12 11 10 37 37 H 1.09005 * 109.59069 * 331.61667 * 12 11 10 38 38 H 1.09000 * 109.46679 * 185.00133 * 16 14 13 39 39 H 1.09003 * 109.46971 * 305.00012 * 16 14 13 40 40 H 0.96998 * 120.00278 * 359.97438 * 17 16 14 41 41 H 0.96997 * 120.00305 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.46005 * 29.32769 * 26 9 7 43 43 H 1.09000 * 109.45798 * 149.28453 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 0.7650 5 6 2.2367 -1.1219 -0.7649 6 1 1.6113 -1.8595 -1.2679 7 6 3.5298 -0.7828 -1.4608 8 8 3.9193 0.3654 -1.4908 9 7 4.2533 -1.7555 -2.0498 10 6 5.5712 -1.4146 -2.6178 11 6 6.6060 -2.5044 -2.3022 12 6 6.4063 -2.9988 -0.8836 13 8 5.5181 -4.1084 -0.9071 14 6 4.1567 -3.8890 -0.8480 15 1 3.9198 -3.3153 0.0480 16 6 3.4253 -5.2320 -0.8021 17 7 3.7601 -5.9280 0.4428 18 6 3.2189 -7.1581 0.7063 19 1 2.5457 -7.6152 -0.0037 20 6 3.5365 -7.8178 1.8856 21 7 3.0168 -9.0003 2.1387 22 14 4.7026 -7.0281 3.1127 23 1 3.9261 -6.2045 4.0740 24 1 5.4377 -8.0874 3.8495 25 1 5.6710 -6.1646 2.3903 26 6 3.7088 -3.0999 -2.0959 27 1 -0.3633 0.8489 0.5790 28 1 -0.3634 0.0769 -1.0247 29 1 -0.3633 -0.9260 0.4458 30 1 3.1716 -0.8751 1.2683 31 1 1.6113 -1.8582 1.2687 32 1 5.4790 -1.3110 -3.6990 33 1 5.9090 -0.4682 -2.1954 34 1 6.4818 -3.3351 -2.9969 35 1 7.6099 -2.0924 -2.4046 36 1 7.3647 -3.3066 -0.4656 37 1 5.9791 -2.2014 -0.2754 38 1 2.3496 -5.0615 -0.8450 39 1 3.7308 -5.8415 -1.6526 40 1 4.3650 -5.5176 1.0804 41 1 3.2390 -9.4615 2.9626 42 1 2.6201 -3.0503 -2.1174 43 1 4.0668 -3.6061 -2.9924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201155146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:05 Heat of formation + Delta-G solvation = -34.932462 kcal Electronic energy + Delta-G solvation = -23494.048693 eV Core-core repulsion = 20154.866699 eV Total energy + Delta-G solvation = -3339.181995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.82535 -38.95240 -37.00760 -35.41440 -34.95679 -33.15844 -31.26187 -29.21227 -28.87245 -26.98186 -25.51662 -23.94320 -22.39238 -21.49010 -21.05587 -20.70283 -18.94108 -17.81344 -17.47719 -16.91359 -16.54324 -15.83746 -15.20841 -14.96296 -14.42457 -14.29744 -13.99152 -13.63729 -13.61151 -13.36806 -12.96155 -12.77964 -12.65962 -12.47197 -12.30040 -12.15597 -11.98359 -11.56460 -11.41769 -11.20857 -10.88256 -10.86996 -10.59442 -10.34043 -10.17695 -10.10765 -9.84382 -9.58645 -9.53088 -8.90281 -8.67323 -7.21952 -5.75705 -3.10712 2.35281 2.74541 3.39538 3.45471 3.47258 3.65088 3.78135 4.24545 4.60371 4.61617 4.62294 4.64870 4.73306 4.86882 4.93185 5.02630 5.13660 5.16539 5.24238 5.34372 5.47593 5.51819 5.55251 5.58837 5.59530 5.65881 5.68242 5.72996 5.82667 5.87057 5.88774 5.93472 5.99457 6.16390 6.35177 6.44191 6.61063 7.17735 7.80509 7.99343 8.01997 8.43180 9.22610 9.95116 10.15256 11.42623 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015429 B = 0.005525 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.382172 B = 5066.838615 C = 6122.494098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 H 0.114 0.886 4 C -0.145 4.145 5 C -0.195 4.195 6 H 0.128 0.872 7 C 0.543 3.457 8 O -0.545 6.545 9 N -0.606 5.606 10 C 0.112 3.888 11 C -0.166 4.166 12 C 0.073 3.927 13 O -0.371 6.371 14 C 0.080 3.920 15 H 0.053 0.947 16 C 0.170 3.830 17 N -0.749 5.749 18 C -0.243 4.243 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.882 3.118 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.274 1.274 26 C 0.074 3.926 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.036 0.964 40 H 0.364 0.636 41 H 0.259 0.741 42 H 0.091 0.909 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 18.151 -8.548 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.132 0.868 4 C -0.183 4.183 5 C -0.215 4.215 6 H 0.145 0.855 7 C 0.331 3.669 8 O -0.423 6.423 9 N -0.338 5.338 10 C -0.010 4.010 11 C -0.204 4.204 12 C -0.004 4.004 13 O -0.289 6.289 14 C 0.020 3.980 15 H 0.071 0.929 16 C 0.042 3.958 17 N -0.395 5.395 18 C -0.373 4.373 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.583 5.583 22 Si 0.712 3.288 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.200 1.200 26 C -0.050 4.050 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.197 0.803 41 H 0.069 0.931 42 H 0.109 0.891 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.332 18.361 -8.643 20.338 hybrid contribution 0.839 0.548 0.800 1.283 sum 2.171 18.910 -7.843 20.586 Atomic orbital electron populations 1.21400 0.92159 1.02449 1.02082 1.22381 0.95320 0.94802 1.01626 0.86812 1.23139 1.03111 1.01479 0.90545 1.22379 0.97639 1.05296 0.96220 0.85460 1.19844 0.84836 0.84653 0.77525 1.90654 1.71376 1.19976 1.60291 1.47835 1.18805 1.09270 1.57905 1.21806 0.81836 0.99064 0.98303 1.22498 0.99120 0.99305 0.99470 1.22146 0.93873 0.89270 0.95103 1.86426 1.15596 1.33335 1.93511 1.22336 0.82118 0.97873 0.95664 0.92908 1.20596 0.95535 0.88797 0.90879 1.42567 1.56594 1.20798 1.19531 1.19041 1.22038 0.92785 1.03408 0.89185 1.24637 0.99945 0.96431 0.97971 1.69700 1.47914 1.14310 1.26345 0.86573 0.81637 0.78683 0.81929 1.21176 1.21759 1.20001 1.22495 0.99909 0.81917 1.00685 0.91778 0.92047 0.91992 0.88576 0.87141 0.91690 0.89384 0.89956 0.89693 0.89279 0.93426 0.94011 0.94589 0.80316 0.93080 0.89126 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.19 37.16 0.38 -0.68 16 2 C -0.12 -1.30 5.92 -90.58 -0.54 -1.84 16 3 H 0.11 1.33 7.69 -51.93 -0.40 0.93 16 4 C -0.15 -1.62 9.69 -26.73 -0.26 -1.88 16 5 C -0.19 -2.23 4.82 -91.73 -0.44 -2.67 16 6 H 0.13 1.29 6.50 -51.93 -0.34 0.95 16 7 C 0.54 7.30 7.40 -10.98 -0.08 7.22 16 8 O -0.55 -8.84 15.62 5.56 0.09 -8.75 16 9 N -0.61 -7.35 2.20 -172.80 -0.38 -7.73 16 10 C 0.11 1.21 6.12 -3.20 -0.02 1.19 16 11 C -0.17 -1.68 5.78 -27.17 -0.16 -1.84 16 12 C 0.07 0.93 6.37 36.42 0.23 1.16 16 13 O -0.37 -5.98 9.38 -26.54 -0.25 -6.23 16 14 C 0.08 1.21 2.67 -26.06 -0.07 1.14 16 15 H 0.05 0.83 7.87 -51.93 -0.41 0.42 16 16 C 0.17 3.13 5.92 -4.04 -0.02 3.10 16 17 N -0.75 -17.74 5.34 -59.91 -0.32 -18.06 16 18 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 19 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -29.33 13.97 55.49 0.78 -28.55 16 22 Si 0.88 22.28 27.73 -169.99 -4.71 17.57 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.27 -6.65 6.52 56.52 0.37 -6.28 16 26 C 0.07 0.88 4.59 -4.11 -0.02 0.86 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 30 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.11 1.18 8.05 -51.93 -0.42 0.76 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.03 7.07 -51.93 -0.37 0.66 16 34 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.63 7.40 -51.93 -0.38 0.24 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.36 8.65 5.52 -40.82 -0.23 8.42 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.09 0.94 5.96 -51.93 -0.31 0.63 16 43 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -33.49 342.00 -7.97 -41.45 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.07 Total: 6.28 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -1.25 Total: -1.14 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.07 Total: -54.34 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.16 Total: -14.98 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.49 -7.97 -41.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201155146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.521 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds