Wall clock time and date at job start Tue Mar 31 2020 02:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47100 * 2 1 4 4 C 1.50701 * 120.00170 * 271.14881 * 3 2 1 5 5 C 1.32995 * 120.00205 * 91.14809 * 3 2 1 6 6 C 1.47098 * 120.00111 * 353.28518 * 5 3 2 7 7 O 1.21616 * 119.99874 * 353.81079 * 6 5 3 8 8 N 1.34774 * 120.00538 * 173.80394 * 6 5 3 9 9 C 1.46504 * 120.00507 * 179.97438 * 8 6 5 10 10 H 1.09003 * 110.87965 * 31.12763 * 9 8 6 11 11 C 1.54905 * 111.00589 * 267.20319 * 9 8 6 12 12 N 1.47420 * 104.82883 * 204.91437 * 11 9 8 13 13 C 1.36942 * 125.64840 * 204.17338 * 12 11 9 14 14 H 1.08000 * 119.99754 * 354.80914 * 13 12 11 15 15 C 1.38808 * 120.00298 * 174.81576 * 13 12 11 16 16 N 1.31626 * 119.99636 * 7.49907 * 15 13 12 17 17 Si 1.86799 * 120.00013 * 187.50206 * 15 13 12 18 18 H 1.48500 * 109.47208 * 94.98155 * 17 15 13 19 19 H 1.48503 * 109.46723 * 214.97881 * 17 15 13 20 20 H 1.48496 * 109.47335 * 334.97748 * 17 15 13 21 21 C 1.47021 * 108.70721 * 24.13078 * 12 11 9 22 22 C 1.54331 * 107.26850 * 358.93732 * 21 12 11 23 23 H 1.08998 * 110.71823 * 96.17290 * 22 21 12 24 24 O 1.42902 * 110.71939 * 219.44505 * 22 21 12 25 25 C 1.42896 * 113.99924 * 263.52320 * 24 22 21 26 26 H 1.09002 * 109.47151 * 59.99849 * 1 2 3 27 27 H 1.09000 * 109.47508 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47328 * 300.00220 * 1 2 3 29 29 H 1.08994 * 109.47319 * 239.99738 * 2 1 3 30 30 H 1.09008 * 109.46782 * 119.99532 * 2 1 3 31 31 H 1.09000 * 109.47264 * 270.00388 * 4 3 2 32 32 H 1.09000 * 109.46563 * 29.99808 * 4 3 2 33 33 H 1.09000 * 109.47473 * 150.00055 * 4 3 2 34 34 H 1.08002 * 120.00047 * 173.00341 * 5 3 2 35 35 H 0.97008 * 119.99735 * 0.02562 * 8 6 5 36 36 H 1.08998 * 110.36736 * 323.75323 * 11 9 8 37 37 H 1.09003 * 110.36467 * 86.07543 * 11 9 8 38 38 H 0.97008 * 119.99614 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.88354 * 239.52363 * 21 12 11 40 40 H 1.09003 * 109.88408 * 118.35381 * 21 12 11 41 41 H 1.08998 * 109.47042 * 179.97438 * 25 24 22 42 42 H 1.09001 * 109.46902 * 300.00285 * 25 24 22 43 43 H 1.09005 * 109.47223 * 59.99955 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2588 2.1400 -1.3048 5 6 2.2757 2.0401 1.1515 6 6 1.9167 1.3950 2.4238 7 8 1.2968 0.3487 2.4214 8 7 2.2748 1.9634 3.5922 9 6 1.9167 1.3212 4.8594 10 1 1.8840 0.2372 4.7500 11 6 0.5704 1.8667 5.3974 12 7 0.6292 1.6468 6.8539 13 6 -0.4509 1.5263 7.6872 14 1 -1.4490 1.6748 7.3023 15 6 -0.2629 1.2136 9.0264 16 7 0.9529 1.1780 9.5295 17 14 -1.7353 0.8432 10.1147 18 1 -1.9544 -0.6245 10.1684 19 1 -1.4795 1.3560 11.4847 20 1 -2.9422 1.5039 9.5562 21 6 2.0394 1.5771 7.2637 22 6 2.8952 1.7368 5.9894 23 1 3.2112 2.7725 5.8644 24 8 4.0253 0.8630 6.0266 25 6 5.2247 1.4834 6.4940 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.2821 1.9708 -1.6401 32 1 1.5637 1.7608 -2.0540 33 1 2.0944 3.2083 -1.1642 34 1 2.7412 3.0147 1.1527 35 1 2.7690 2.7981 3.5942 36 1 0.4771 2.9303 5.1778 37 1 -0.2632 1.3143 4.9636 38 1 1.0843 0.9591 10.4653 39 1 2.2432 0.6125 7.7286 40 1 2.2624 2.3827 7.9634 41 1 6.0351 0.7545 6.4928 42 1 5.4826 2.3152 5.8385 43 1 5.0710 1.8537 7.5076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212221513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:03 Heat of formation + Delta-G solvation = -37.835160 kcal Electronic energy + Delta-G solvation = -22872.752215 eV Core-core repulsion = 19533.444350 eV Total energy + Delta-G solvation = -3339.307865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85075 -38.30284 -36.21321 -35.60647 -33.92700 -31.83859 -30.79751 -28.97969 -28.17789 -26.80934 -26.08894 -24.31414 -23.53208 -21.32496 -20.48509 -20.01906 -18.62134 -17.15667 -16.84119 -16.19589 -15.54759 -15.06887 -14.74754 -14.57682 -14.33851 -14.21240 -13.88536 -13.69146 -13.21849 -12.96302 -12.80187 -12.67411 -12.38514 -12.18877 -11.93705 -11.86122 -11.57663 -11.20724 -11.05889 -10.99544 -10.80229 -10.76093 -10.66812 -10.12511 -9.96649 -9.78036 -9.31207 -9.19791 -9.02119 -8.65457 -8.46098 -6.86561 -5.73289 -3.06656 1.40527 3.41226 3.45779 3.47838 3.49025 3.50543 4.16939 4.52669 4.68963 4.74278 5.11455 5.18991 5.26940 5.36516 5.39820 5.42120 5.49096 5.59566 5.60075 5.63473 5.67235 5.69291 5.74441 5.86856 5.93711 5.95746 6.09603 6.18299 6.25336 6.37079 6.45259 6.58487 6.63577 6.72153 6.94645 7.27804 7.49701 7.73716 7.82257 7.89331 8.21957 8.55121 9.18783 9.79339 10.43153 11.38571 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.004303 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.538943 B = 6505.908703 C = 7567.716305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.106 4.106 3 C -0.034 4.034 4 C -0.125 4.125 5 C -0.228 4.228 6 C 0.543 3.457 7 O -0.533 6.533 8 N -0.714 5.714 9 C 0.133 3.867 10 H 0.106 0.894 11 C 0.131 3.869 12 N -0.601 5.601 13 C -0.230 4.230 14 H 0.081 0.919 15 C -0.005 4.005 16 N -0.920 5.920 17 Si 0.912 3.088 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.164 3.836 22 C 0.055 3.945 23 H 0.062 0.938 24 O -0.378 6.378 25 C 0.035 3.965 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.395 0.605 36 H 0.022 0.978 37 H 0.050 0.950 38 H 0.253 0.747 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.079 0.921 42 H 0.033 0.967 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.190 3.842 -17.627 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.142 4.142 3 C -0.036 4.036 4 C -0.182 4.182 5 C -0.249 4.249 6 C 0.332 3.668 7 O -0.413 6.413 8 N -0.363 5.363 9 C 0.028 3.972 10 H 0.124 0.876 11 C 0.004 3.996 12 N -0.328 5.328 13 C -0.358 4.358 14 H 0.099 0.901 15 C -0.202 4.202 16 N -0.567 5.567 17 Si 0.742 3.258 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.039 3.961 22 C -0.004 4.004 23 H 0.080 0.920 24 O -0.296 6.296 25 C -0.062 4.062 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.141 0.859 35 H 0.228 0.772 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.699 2.863 -17.427 18.888 hybrid contribution -0.261 0.707 0.804 1.102 sum 6.438 3.570 -16.622 18.180 Atomic orbital electron populations 1.21523 0.94209 1.01676 1.01412 1.21015 0.97166 0.92539 1.03528 1.22533 0.90871 0.95882 0.94289 1.20976 1.02457 1.00102 0.94654 1.22401 1.08185 1.02109 0.92253 1.18514 0.79521 0.84601 0.84144 1.90729 1.40397 1.22908 1.87265 1.45869 1.57937 1.26752 1.05765 1.22366 0.94743 0.99375 0.80747 0.87567 1.21826 0.94515 0.97155 0.86142 1.44260 1.02154 1.85667 1.00761 1.19078 0.85812 1.41108 0.89797 0.90142 1.24834 0.96834 1.01577 0.96937 1.69963 1.19021 1.54414 1.13291 0.86094 0.81586 0.78242 0.79833 1.21495 1.21777 1.20576 1.21564 0.82271 1.02221 0.90050 1.23845 0.86652 0.92099 0.97776 0.92017 1.87913 1.17683 1.37534 1.86438 1.22702 0.87393 0.97782 0.98351 0.94019 0.92761 0.91565 0.92510 0.87650 0.90682 0.91029 0.91235 0.85934 0.77171 0.96081 0.93188 0.93672 0.91889 0.93598 0.90282 0.94883 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.44 37.16 0.35 -1.25 16 2 C -0.11 -1.27 5.32 -27.88 -0.15 -1.42 16 3 C -0.03 -0.36 5.36 -101.17 -0.54 -0.91 16 4 C -0.13 -0.92 10.04 36.01 0.36 -0.56 16 5 C -0.23 -2.66 9.62 -37.81 -0.36 -3.03 16 6 C 0.54 8.36 7.62 -12.67 -0.10 8.27 16 7 O -0.53 -9.86 11.24 5.26 0.06 -9.80 16 8 N -0.71 -10.80 5.19 -52.91 -0.27 -11.08 16 9 C 0.13 2.55 3.15 -65.78 -0.21 2.35 16 10 H 0.11 2.33 7.54 -51.93 -0.39 1.94 16 11 C 0.13 2.85 6.93 -2.53 -0.02 2.83 16 12 N -0.60 -15.68 3.39 -170.07 -0.58 -16.26 16 13 C -0.23 -6.52 10.26 -15.06 -0.15 -6.68 16 14 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 15 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 16 N -0.92 -27.13 10.37 55.49 0.58 -26.56 16 17 Si 0.91 22.35 29.56 -169.99 -5.02 17.32 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.16 4.05 5.16 -3.06 -0.02 4.03 16 22 C 0.06 1.07 3.09 -24.89 -0.08 0.99 16 23 H 0.06 1.05 7.69 -51.93 -0.40 0.65 16 24 O -0.38 -7.11 10.43 -35.23 -0.37 -7.47 16 25 C 0.03 0.50 10.85 101.05 1.10 1.59 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.97 6.86 -51.92 -0.36 0.62 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.11 1.57 5.59 -51.92 -0.29 1.28 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.39 4.78 8.55 -40.82 -0.35 4.43 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.06 1.76 7.22 -51.93 -0.38 1.39 16 40 H 0.05 1.22 7.60 -51.93 -0.39 0.82 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 348.50 15.07 5.25 5.25 Total: -1.00 -32.40 348.50 -7.44 -39.84 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.17 Total: 2.79 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 0.09 Total: 5.96 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.28 Total: -53.89 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.31 Total: -17.28 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.40 -7.44 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212221513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.007 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds