Wall clock time and date at job start Tue Mar 31 2020 02:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99994 * 2 1 4 4 C 1.52995 * 109.47236 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47172 * 240.00323 * 3 2 1 6 6 C 1.50704 * 109.46987 * 120.00273 * 3 2 1 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 3 2 8 8 N 1.34775 * 120.00028 * 180.02562 * 6 3 2 9 9 C 1.46501 * 119.99915 * 180.02562 * 8 6 3 10 10 H 1.08993 * 110.78318 * 31.75924 * 9 8 6 11 11 C 1.54325 * 110.71718 * 268.51763 * 9 8 6 12 12 N 1.47026 * 107.27038 * 219.44286 * 11 9 8 13 13 C 1.36936 * 125.64463 * 178.90061 * 12 11 9 14 14 H 1.07995 * 120.00367 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99797 * 180.02562 * 13 12 11 16 16 N 1.31618 * 119.99849 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00230 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46970 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47021 * 119.99663 * 17 15 13 20 20 H 1.48502 * 109.47346 * 239.99990 * 17 15 13 21 21 C 1.47423 * 108.70368 * 358.94396 * 12 11 9 22 22 C 1.54912 * 104.83154 * 24.12732 * 21 12 11 23 23 H 1.08998 * 111.03733 * 81.08012 * 22 21 12 24 24 O 1.42899 * 111.00213 * 204.91676 * 22 21 12 25 25 C 1.42905 * 113.99778 * 262.19377 * 24 22 21 26 26 H 1.07998 * 119.99751 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00108 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99429 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47226 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.47090 * 299.99671 * 4 3 2 31 31 H 1.08998 * 109.47217 * 60.00135 * 4 3 2 32 32 H 1.09005 * 109.46766 * 300.00060 * 5 3 2 33 33 H 1.08993 * 109.47408 * 60.00283 * 5 3 2 34 34 H 1.08997 * 109.47052 * 180.02562 * 5 3 2 35 35 H 0.96999 * 119.99688 * 359.97438 * 8 6 3 36 36 H 1.08999 * 109.88566 * 338.86785 * 11 9 8 37 37 H 1.09005 * 109.88040 * 100.02686 * 11 9 8 38 38 H 0.97009 * 120.00116 * 179.97438 * 16 15 13 39 39 H 1.09001 * 110.36434 * 265.29035 * 21 12 11 40 40 H 1.09000 * 110.36702 * 142.96442 * 21 12 11 41 41 H 1.09001 * 109.46558 * 60.00281 * 25 24 22 42 42 H 1.09001 * 109.47103 * 179.97438 * 25 24 22 43 43 H 1.09000 * 109.47187 * 300.00233 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3862 -1.2493 6 6 2.9300 1.3848 1.2305 7 8 2.9347 0.4720 2.0290 8 7 3.6988 2.4710 1.4440 9 6 4.5415 2.5483 2.6399 10 1 4.8833 1.5569 2.9369 11 6 3.7855 3.2347 3.7971 12 7 4.7479 4.1002 4.4945 13 6 4.4679 4.9007 5.5696 14 1 3.4670 4.9313 5.9740 15 6 5.4704 5.6737 6.1391 16 7 6.6901 5.6368 5.6459 17 14 5.0884 6.7663 7.6053 18 1 3.6542 6.6288 7.9647 19 1 5.9297 6.3584 8.7590 20 1 5.3776 8.1807 7.2573 21 6 6.0638 3.9643 3.8440 22 6 5.7468 3.4959 2.4018 23 1 5.4630 4.3379 1.7705 24 8 6.8524 2.7869 1.8389 25 6 7.6855 3.5845 0.9951 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.6143 3.4120 0.0011 30 1 0.4424 2.4105 -0.8892 31 1 0.4430 2.4101 0.8908 32 1 3.6514 0.5576 -1.2493 33 1 2.3165 1.3285 -2.1392 34 1 3.4884 2.3299 -1.2490 35 1 3.6947 3.2012 0.8055 36 1 2.9666 3.8349 3.4005 37 1 3.3976 2.4826 4.4841 38 1 7.3907 6.1773 6.0436 39 1 6.6673 3.2182 4.3611 40 1 6.5793 4.9245 3.8263 41 1 8.0951 4.4153 1.5697 42 1 8.5012 2.9739 0.6080 43 1 7.0959 3.9728 0.1646 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213266972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:49 Heat of formation + Delta-G solvation = -32.009929 kcal Electronic energy + Delta-G solvation = -23261.291744 eV Core-core repulsion = 19922.236479 eV Total energy + Delta-G solvation = -3339.055264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19953 -38.33302 -36.35302 -35.81278 -34.07685 -31.91428 -30.76454 -28.75244 -27.57792 -27.09623 -26.08626 -24.58255 -23.71629 -21.17068 -20.62061 -19.89508 -18.59668 -17.29093 -16.66833 -16.58089 -15.72389 -15.34045 -15.00311 -14.65607 -14.42516 -14.28463 -14.03969 -13.72663 -13.19975 -13.01984 -12.55549 -12.46852 -12.28299 -12.18963 -11.98706 -11.86357 -11.46584 -11.30442 -11.28396 -11.03111 -10.85775 -10.83963 -10.75492 -10.17883 -9.90681 -9.83513 -9.72296 -9.38480 -9.05426 -8.71546 -8.61623 -6.90631 -5.70496 -3.13503 2.17438 2.84074 3.37303 3.41226 3.44243 3.46637 4.12229 4.45068 4.48769 4.64748 4.81582 4.97320 5.22842 5.26749 5.36081 5.41800 5.48562 5.50113 5.55234 5.60332 5.60804 5.68329 5.69603 5.80515 5.83536 5.93396 5.94980 6.03037 6.08840 6.22508 6.48681 6.53691 6.66832 6.68464 6.91041 7.25479 7.55249 7.70128 7.73376 7.80370 8.25795 8.44667 9.15215 9.75577 10.38200 11.33305 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.004604 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.893052 B = 6080.310289 C = 7016.353864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.057 4.057 4 C -0.144 4.144 5 C -0.135 4.135 6 C 0.525 3.475 7 O -0.536 6.536 8 N -0.713 5.713 9 C 0.134 3.866 10 H 0.103 0.897 11 C 0.131 3.869 12 N -0.601 5.601 13 C -0.222 4.222 14 H 0.081 0.919 15 C -0.010 4.010 16 N -0.923 5.923 17 Si 0.917 3.083 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.142 3.858 22 C 0.055 3.945 23 H 0.066 0.934 24 O -0.380 6.380 25 C 0.035 3.965 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.029 0.971 37 H 0.033 0.967 38 H 0.253 0.747 39 H 0.026 0.974 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.078 0.922 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.474 -4.964 -16.156 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.138 4.138 3 C -0.060 4.060 4 C -0.201 4.201 5 C -0.193 4.193 6 C 0.310 3.690 7 O -0.412 6.412 8 N -0.364 5.364 9 C 0.029 3.971 10 H 0.121 0.879 11 C 0.003 3.997 12 N -0.328 5.328 13 C -0.350 4.350 14 H 0.098 0.902 15 C -0.206 4.206 16 N -0.571 5.571 17 Si 0.747 3.253 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.016 3.984 22 C -0.005 4.005 23 H 0.084 0.916 24 O -0.298 6.298 25 C -0.062 4.062 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.131 0.869 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.130 0.870 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.327 -5.680 -15.383 17.576 hybrid contribution -0.133 1.119 0.433 1.207 sum -6.460 -4.561 -14.950 16.913 Atomic orbital electron populations 1.23937 0.95869 1.02125 1.01512 1.22503 0.95598 0.96679 0.98985 1.19918 0.95768 0.95901 0.94431 1.21951 0.98805 0.96408 1.02946 1.21797 0.99177 1.02691 0.95615 1.20344 0.79764 0.82044 0.86812 1.90699 1.65588 1.37945 1.46934 1.45993 1.44711 1.20485 1.25189 1.22171 0.89152 1.00948 0.84793 0.87946 1.21604 0.92901 0.93039 0.92107 1.44315 1.05061 1.48768 1.34692 1.19145 0.95514 1.16118 1.04227 0.90159 1.24800 0.95443 1.00482 0.99839 1.69768 1.00931 1.43930 1.42490 0.85964 0.77480 0.79951 0.81902 1.20466 1.21648 1.21721 1.22291 0.88269 1.02509 0.85333 1.24044 0.85552 0.92647 0.98224 0.91597 1.87857 1.39999 1.36994 1.64971 1.22705 0.94207 0.96158 0.93104 0.87936 0.88364 0.86908 0.91768 0.91169 0.91555 0.91810 0.91383 0.91841 0.77013 0.95275 0.94951 0.93664 0.95555 0.87011 0.93553 0.90324 0.94860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 13.70 29.01 0.40 -1.58 16 2 C -0.12 -1.38 8.00 -36.03 -0.29 -1.67 16 3 C -0.06 -0.64 0.84 -156.81 -0.13 -0.77 16 4 C -0.14 -1.36 7.02 37.16 0.26 -1.10 16 5 C -0.14 -1.22 8.35 37.16 0.31 -0.91 16 6 C 0.52 8.17 6.47 -10.98 -0.07 8.10 16 7 O -0.54 -10.61 15.68 5.55 0.09 -10.53 16 8 N -0.71 -10.82 4.89 -52.03 -0.25 -11.08 16 9 C 0.13 2.56 3.05 -66.09 -0.20 2.36 16 10 H 0.10 2.19 7.55 -51.93 -0.39 1.80 16 11 C 0.13 2.87 6.99 -3.06 -0.02 2.84 16 12 N -0.60 -15.48 3.39 -170.07 -0.58 -16.06 16 13 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 14 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 15 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 16 N -0.92 -26.53 10.09 55.49 0.56 -25.97 16 17 Si 0.92 21.92 29.55 -169.99 -5.02 16.89 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.14 3.46 5.62 -2.53 -0.01 3.44 16 22 C 0.05 1.05 3.17 -24.58 -0.08 0.98 16 23 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 24 O -0.38 -6.97 10.51 -35.23 -0.37 -7.34 16 25 C 0.04 0.50 10.85 101.05 1.10 1.59 16 26 H 0.10 0.92 5.69 -52.49 -0.30 0.62 16 27 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 30 H 0.07 0.53 7.50 -51.93 -0.39 0.14 16 31 H 0.07 0.69 7.50 -51.93 -0.39 0.31 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.52 7.56 -51.93 -0.39 0.12 16 35 H 0.40 4.90 7.40 -40.82 -0.30 4.60 16 36 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.11 2.99 5.87 -51.93 -0.30 2.69 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 LS Contribution 346.85 15.07 5.23 5.23 Total: -1.00 -32.28 346.85 -6.37 -38.65 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.03 Total: 3.62 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 1.01 Total: 6.58 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.27 Total: -53.10 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.28 Total: -17.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.28 -6.37 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213266972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.643 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds