Wall clock time and date at job start Tue Mar 31 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47087 * 87.76645 * 3 2 1 5 5 C 1.42898 * 114.00230 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47561 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46944 * 54.99657 * 6 5 4 8 8 O 1.42908 * 109.47028 * 295.00164 * 6 5 4 9 9 C 1.52996 * 109.47528 * 174.99741 * 6 5 4 10 10 N 1.46900 * 109.47233 * 186.09566 * 9 6 5 11 11 C 1.46960 * 110.99770 * 283.99642 * 10 9 6 12 12 C 1.53049 * 109.36164 * 183.18816 * 11 10 9 13 13 N 1.46958 * 109.36807 * 301.59935 * 12 11 10 14 14 C 1.46893 * 111.00045 * 183.18861 * 13 12 11 15 15 C 1.50707 * 109.46781 * 169.99435 * 14 13 12 16 16 H 1.07997 * 120.00214 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99874 * 179.72457 * 15 14 13 18 18 N 1.31520 * 120.00138 * 0.27662 * 17 15 14 19 19 Si 1.86799 * 120.00242 * 180.28047 * 17 15 14 20 20 H 1.48505 * 109.46887 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47523 * 119.99624 * 19 17 15 22 22 H 1.48499 * 109.47265 * 240.00142 * 19 17 15 23 23 C 1.46956 * 110.87857 * 59.31497 * 13 12 11 24 24 C 1.46952 * 110.99834 * 47.79221 * 10 9 6 25 25 H 4.38449 * 5.44347 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47795 * 327.76061 * 3 2 1 27 27 H 1.09000 * 109.47364 * 207.75903 * 3 2 1 28 28 H 1.09005 * 109.47140 * 59.99382 * 5 4 3 29 29 H 1.09003 * 109.47168 * 299.99669 * 5 4 3 30 30 H 0.96703 * 113.99115 * 299.99466 * 8 6 5 31 31 H 1.08996 * 109.46799 * 66.09536 * 9 6 5 32 32 H 1.09003 * 109.46822 * 306.09935 * 9 6 5 33 33 H 1.08993 * 109.49148 * 63.22252 * 11 10 9 34 34 H 1.09001 * 109.50302 * 303.16188 * 11 10 9 35 35 H 1.09003 * 109.48998 * 181.62405 * 12 11 10 36 36 H 1.09006 * 109.48904 * 61.56463 * 12 11 10 37 37 H 1.08998 * 109.47508 * 50.00126 * 14 13 12 38 38 H 1.08995 * 109.47367 * 289.99221 * 14 13 12 39 39 H 0.97002 * 120.00151 * 180.02562 * 18 17 15 40 40 H 1.09006 * 109.48685 * 60.65860 * 23 13 12 41 41 H 1.09007 * 109.48593 * 180.71452 * 23 13 12 42 42 H 1.08999 * 109.49340 * 296.78229 * 24 10 9 43 43 H 1.08998 * 109.49097 * 56.84626 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1224 -0.0516 -1.3463 5 6 4.5469 -0.0548 -1.4591 6 6 4.9415 -0.1130 -2.9362 7 1 4.4648 0.7078 -3.4722 8 8 4.5152 -1.3575 -3.4945 9 6 6.4612 0.0093 -3.0634 10 7 6.8281 0.1002 -4.4830 11 6 6.7410 -1.2141 -5.1346 12 6 7.2061 -1.0918 -6.5876 13 7 6.3703 -0.1048 -7.2854 14 6 6.7372 -0.0139 -8.7049 15 6 5.7123 0.8140 -9.4366 16 1 4.8726 1.2312 -8.9006 17 6 5.8498 1.0439 -10.7890 18 7 6.8726 0.5363 -11.4417 19 14 4.5837 2.0765 -11.6945 20 1 3.5385 2.5269 -10.7405 21 1 5.2487 3.2602 -12.2959 22 1 3.9567 1.2629 -12.7669 23 6 6.4573 1.2094 -6.6336 24 6 5.9922 1.0872 -5.1807 25 1 -1.0500 0.0002 0.0000 26 1 3.0099 -0.8684 0.5482 27 1 3.0090 0.9102 0.4786 28 1 4.9505 -0.9248 -0.9410 29 1 4.9489 0.8538 -1.0108 30 1 4.9009 -2.1336 -3.0654 31 1 6.9344 -0.8674 -2.6213 32 1 6.7985 0.9056 -2.5428 33 1 5.7090 -1.5639 -5.1114 34 1 7.3778 -1.9245 -4.6075 35 1 7.1151 -2.0594 -7.0812 36 1 8.2467 -0.7681 -6.6104 37 1 6.7712 -1.0143 -9.1362 38 1 7.7166 0.4553 -8.7977 39 1 6.9696 0.6984 -12.3931 40 1 7.4894 1.5593 -6.6570 41 1 5.8203 1.9197 -7.1609 42 1 4.9516 0.7636 -5.1579 43 1 6.0833 2.0547 -4.6871 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251847230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:53 Heat of formation + Delta-G solvation = -19.344690 kcal Electronic energy + Delta-G solvation = -22364.343081 eV Core-core repulsion = 19025.837023 eV Total energy + Delta-G solvation = -3338.506058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.67047 -38.32120 -36.78526 -34.57444 -33.54286 -32.46701 -30.78434 -30.23894 -28.29704 -27.06184 -25.50291 -23.58436 -23.23165 -21.88801 -21.13290 -19.04888 -18.73025 -17.36016 -16.82123 -16.35750 -16.25708 -15.52937 -15.39038 -15.15740 -14.52611 -14.45675 -14.29637 -13.99325 -13.62167 -13.17843 -12.89868 -12.57769 -12.40834 -12.00628 -11.89724 -11.46431 -11.21504 -11.14728 -11.03899 -10.85318 -10.79962 -10.77013 -10.55490 -10.31343 -10.24763 -10.09808 -9.91950 -9.65995 -9.10382 -8.38945 -7.91884 -7.12626 -5.97654 -3.98592 2.16754 2.47820 3.34714 3.41904 3.47449 3.50371 4.05157 4.17675 4.26930 4.47432 4.67660 4.75624 4.85938 4.94938 4.97468 5.03352 5.07207 5.10314 5.37744 5.43001 5.57664 5.60057 5.65712 5.74816 5.88553 6.00856 6.06830 6.16819 6.31096 6.55681 6.70501 6.74669 6.76325 7.21870 7.24350 7.26181 7.40993 7.43954 7.54796 7.86906 8.16274 8.28819 8.62819 9.09662 9.65540 11.13324 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019659 B = 0.003335 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.947455 B = 8394.426276 C = 9386.067805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.195 4.195 3 C 0.171 3.829 4 O -0.371 6.371 5 C 0.033 3.967 6 C 0.069 3.931 7 H 0.114 0.886 8 O -0.540 6.540 9 C 0.028 3.972 10 N -0.529 5.529 11 C 0.045 3.955 12 C 0.057 3.943 13 N -0.536 5.536 14 C 0.193 3.807 15 C -0.504 4.504 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.900 5.900 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.069 3.931 24 C 0.049 3.951 25 H 0.222 0.778 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.368 0.632 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.029 0.971 38 H -0.010 1.010 39 H 0.260 0.740 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.051 0.949 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 -2.001 24.655 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.195 4.195 3 C 0.095 3.905 4 O -0.290 6.290 5 C -0.045 4.045 6 C 0.009 3.991 7 H 0.132 0.868 8 O -0.344 6.344 9 C -0.101 4.101 10 N -0.252 5.252 11 C -0.083 4.083 12 C -0.072 4.072 13 N -0.261 5.261 14 C 0.068 3.932 15 C -0.543 4.543 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.210 1.210 23 C -0.060 4.060 24 C -0.078 4.078 25 H 0.239 0.761 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.215 0.785 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.008 0.992 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.007 -1.619 23.893 24.281 hybrid contribution -0.223 0.237 0.073 0.333 sum -4.230 -1.382 23.966 24.376 Atomic orbital electron populations 1.25002 0.95932 1.00635 0.97439 1.22530 0.93938 1.00803 1.02239 1.19073 0.84907 1.01248 0.85237 1.88083 1.21061 1.95318 1.24543 1.23352 0.81283 1.00953 0.98883 1.22889 0.95967 0.88911 0.91381 0.86812 1.86753 1.72446 1.14585 1.60631 1.22806 0.92329 1.03014 0.91981 1.62504 1.53254 1.08903 1.00517 1.22454 1.01833 0.89504 0.94462 1.22060 0.94944 0.97286 0.92922 1.62246 1.53062 1.06003 1.04830 1.19701 0.94897 0.97288 0.81310 1.21212 1.08955 1.31080 0.93053 0.91852 1.24995 0.95794 0.96304 0.97611 1.69976 1.29559 1.45462 1.08949 0.86454 0.81451 0.79902 0.79701 1.19643 1.21162 1.21042 1.21966 0.99397 0.92944 0.91694 1.22353 0.95847 0.94521 0.95108 0.76113 0.90995 0.90954 0.92789 0.92116 0.78513 0.90600 0.89912 0.91016 0.91967 0.91199 0.95642 0.95266 0.99170 0.93047 0.95558 0.89646 0.93112 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 19.25 29.55 0.57 -0.98 16 2 C -0.20 -2.02 13.73 -37.12 -0.51 -2.53 16 3 C 0.17 1.48 6.41 34.37 0.22 1.70 16 4 O -0.37 -4.25 10.27 -40.07 -0.41 -4.66 16 5 C 0.03 0.28 5.57 37.16 0.21 0.49 16 6 C 0.07 0.75 2.70 -26.73 -0.07 0.68 16 7 H 0.11 1.49 6.00 -51.93 -0.31 1.18 16 8 O -0.54 -6.76 10.49 -40.07 -0.42 -7.18 16 9 C 0.03 0.29 5.29 -3.83 -0.02 0.27 16 10 N -0.53 -7.63 4.92 -234.48 -1.15 -8.79 16 11 C 0.05 0.69 5.19 -3.77 -0.02 0.67 16 12 C 0.06 1.09 5.61 -3.77 -0.02 1.07 16 13 N -0.54 -12.14 4.70 -235.91 -1.11 -13.25 16 14 C 0.19 5.22 4.72 -4.98 -0.02 5.19 16 15 C -0.50 -14.54 8.47 -34.44 -0.29 -14.83 16 16 H 0.06 1.82 7.13 -52.49 -0.37 1.44 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 19 Si 0.90 22.10 29.54 -169.99 -5.02 17.07 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.07 1.40 5.43 -3.77 -0.02 1.38 16 24 C 0.05 0.80 4.73 -3.77 -0.02 0.78 16 25 H 0.22 1.14 7.80 -54.09 -0.42 0.72 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.37 3.16 9.05 45.56 0.41 3.58 16 31 H 0.08 0.64 7.91 -51.93 -0.41 0.23 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.17 5.64 -51.93 -0.29 0.88 16 34 H 0.06 0.80 8.02 -51.93 -0.42 0.38 16 35 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 38 H -0.01 -0.27 8.12 -51.93 -0.42 -0.70 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.86 6.79 -51.92 -0.35 1.51 16 42 H 0.05 0.89 6.28 -51.93 -0.33 0.56 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -34.28 349.36 -8.48 -42.76 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.27 Total: -0.02 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -0.10 Total: -4.66 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -1.53 Total: -48.59 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -0.83 Total: -11.84 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.28 -8.48 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251847230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.418 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds