Wall clock time and date at job start Tue Mar 31 2020 02:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42896 * 109.47019 * 164.73195 * 3 2 1 5 5 C 1.42897 * 114.00187 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47147 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47191 * 305.00352 * 6 5 4 8 8 O 1.42899 * 109.47139 * 65.00602 * 6 5 4 9 9 C 1.53000 * 109.46821 * 185.00404 * 6 5 4 10 10 N 1.46903 * 109.46744 * 177.03812 * 9 6 5 11 11 C 1.46958 * 110.99863 * 160.44323 * 10 9 6 12 12 C 1.53055 * 109.36629 * 183.18551 * 11 10 9 13 13 N 1.46956 * 109.36506 * 301.60236 * 12 11 10 14 14 C 1.46895 * 111.00196 * 183.18842 * 13 12 11 15 15 C 1.50692 * 109.47325 * 169.99832 * 14 13 12 16 16 H 1.07996 * 120.00056 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00116 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00020 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99696 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47224 * 90.00201 * 19 17 15 21 21 H 1.48506 * 109.46867 * 209.99799 * 19 17 15 22 22 H 1.48497 * 109.47522 * 329.99476 * 19 17 15 23 23 C 1.46950 * 110.88352 * 59.31475 * 13 12 11 24 24 C 1.46956 * 111.00014 * 284.23973 * 10 9 6 25 25 H 4.38445 * 5.44395 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.47019 * 44.73092 * 3 2 1 27 27 H 1.09007 * 109.46943 * 284.72975 * 3 2 1 28 28 H 1.09006 * 109.47024 * 60.00640 * 5 4 3 29 29 H 1.08998 * 109.47663 * 300.00533 * 5 4 3 30 30 H 0.96699 * 113.99783 * 59.99253 * 8 6 5 31 31 H 1.08998 * 109.47235 * 57.03847 * 9 6 5 32 32 H 1.08999 * 109.47252 * 297.03236 * 9 6 5 33 33 H 1.09005 * 109.49101 * 63.21855 * 11 10 9 34 34 H 1.08999 * 109.49235 * 303.15237 * 11 10 9 35 35 H 1.08998 * 109.48836 * 181.62895 * 12 11 10 36 36 H 1.09005 * 109.48055 * 61.56518 * 12 11 10 37 37 H 1.09004 * 109.46898 * 289.99708 * 14 13 12 38 38 H 1.09001 * 109.47388 * 49.99404 * 14 13 12 39 39 H 0.97002 * 119.99629 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.49246 * 60.64746 * 23 13 12 41 41 H 1.09003 * 109.49488 * 180.69488 * 23 13 12 42 42 H 1.08995 * 109.48571 * 56.84729 * 24 10 9 43 43 H 1.08999 * 109.48851 * 296.78372 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.3006 -0.3548 5 6 4.5462 1.4103 -0.3839 6 6 4.9400 2.8367 -0.7727 7 1 4.4643 3.1004 -1.7172 8 8 4.5119 3.7433 0.2456 9 6 6.4599 2.9224 -0.9256 10 7 6.8322 4.2730 -1.3676 11 6 8.2486 4.5470 -1.0877 12 6 8.5758 5.9873 -1.4890 13 7 8.2779 6.1753 -2.9157 14 6 8.6502 7.5258 -3.3578 15 6 8.5633 7.6044 -4.8601 16 1 8.2621 6.7377 -5.4297 17 6 8.8684 8.7829 -5.5076 18 7 8.7931 8.8514 -6.8188 19 14 9.3901 10.2818 -4.5225 20 1 10.8662 10.2784 -4.3603 21 1 8.9737 11.5143 -5.2387 22 1 8.7451 10.2445 -3.1854 23 6 6.8616 5.9013 -3.1957 24 6 6.5344 4.4610 -2.7944 25 1 -1.0502 -0.0004 0.0003 26 1 3.0097 -0.7292 -0.7232 27 1 3.0095 -0.2605 0.9940 28 1 4.9497 0.7096 -1.1150 29 1 4.9488 1.1785 0.6021 30 1 4.8965 3.5680 1.1153 31 1 6.7923 2.1937 -1.6649 32 1 6.9341 2.7102 0.0326 33 1 8.8719 3.8596 -1.6596 34 1 8.4414 4.4134 -0.0233 35 1 9.6328 6.1837 -1.3091 36 1 7.9719 6.6756 -0.8976 37 1 7.9693 8.2533 -2.9159 38 1 9.6701 7.7436 -3.0409 39 1 9.0081 9.6804 -7.2743 40 1 6.2382 6.5886 -2.6237 41 1 6.6686 6.0353 -4.2601 42 1 5.4774 4.2646 -2.9741 43 1 7.1382 3.7726 -3.3857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251847231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:55 Heat of formation + Delta-G solvation = -19.318582 kcal Electronic energy + Delta-G solvation = -21992.118296 eV Core-core repulsion = 18653.613370 eV Total energy + Delta-G solvation = -3338.504926 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.37189 -38.46464 -36.88156 -34.83923 -33.56113 -32.44274 -30.84946 -30.41897 -28.65493 -27.30490 -25.69606 -23.61010 -23.28466 -21.54486 -21.00208 -19.24324 -18.79525 -17.36410 -16.85934 -16.75685 -16.34518 -15.64960 -15.41105 -15.20640 -14.51331 -14.38990 -14.21326 -14.14236 -13.58109 -13.50818 -12.94226 -12.86443 -12.55866 -12.28152 -11.97816 -11.89639 -11.39519 -11.16335 -10.95074 -10.93093 -10.88314 -10.77103 -10.54584 -10.37433 -10.18424 -9.97728 -9.92849 -9.77827 -9.24687 -8.55138 -8.15707 -7.34191 -6.03722 -4.00913 2.12785 2.44817 3.30241 3.37714 3.39281 3.40683 3.91692 4.24232 4.34561 4.43969 4.68209 4.72881 4.78339 4.86081 4.91298 4.98209 5.07196 5.09187 5.27097 5.28640 5.45052 5.50486 5.54579 5.65597 5.75856 5.82838 5.89102 6.01949 6.12551 6.32871 6.52828 6.67063 6.72329 6.86213 6.99872 7.15516 7.21158 7.23660 7.61596 7.66257 7.93131 8.07325 8.67688 9.04136 9.58234 11.09350 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031829 B = 0.002780 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.495528 B =10069.762197 C =10466.768080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.194 4.194 3 C 0.171 3.829 4 O -0.370 6.370 5 C 0.031 3.969 6 C 0.117 3.883 7 H 0.107 0.893 8 O -0.536 6.536 9 C 0.027 3.973 10 N -0.529 5.529 11 C 0.063 3.937 12 C 0.054 3.946 13 N -0.530 5.530 14 C 0.162 3.838 15 C -0.509 4.509 16 H 0.080 0.920 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.067 3.933 24 C 0.057 3.943 25 H 0.222 0.778 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.367 0.633 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.032 0.968 37 H -0.010 1.010 38 H 0.023 0.977 39 H 0.263 0.737 40 H 0.031 0.969 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.782 -18.348 16.449 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.194 4.194 3 C 0.095 3.905 4 O -0.289 6.289 5 C -0.047 4.047 6 C 0.056 3.944 7 H 0.125 0.875 8 O -0.339 6.339 9 C -0.102 4.102 10 N -0.254 5.254 11 C -0.065 4.065 12 C -0.075 4.075 13 N -0.255 5.255 14 C 0.036 3.964 15 C -0.547 4.547 16 H 0.098 0.902 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.703 3.297 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.061 4.061 24 C -0.071 4.071 25 H 0.239 0.761 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.213 0.787 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.007 0.993 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.194 -17.796 15.744 25.477 hybrid contribution 0.691 0.310 0.873 1.156 sum -8.503 -17.486 16.616 25.576 Atomic orbital electron populations 1.25000 0.95927 0.97681 1.00450 1.22525 0.93923 1.02113 1.00876 1.19080 0.84898 0.86252 1.00241 1.88054 1.20951 1.29401 1.90536 1.23334 0.81330 0.99183 1.00822 1.21868 0.93140 0.86067 0.93293 0.87550 1.86705 1.71486 1.55508 1.20244 1.22664 0.95502 0.91102 1.00943 1.62027 1.19837 1.24580 1.18918 1.22154 0.87389 0.97374 0.99585 1.22109 1.00171 0.94753 0.90513 1.62111 1.18686 1.30710 1.13969 1.20152 0.94962 0.84037 0.97244 1.21024 1.45692 0.98735 0.89240 0.90207 1.24905 0.95219 0.98498 0.94771 1.69895 1.49510 1.27160 1.07426 0.86853 0.79289 0.82885 0.80696 1.20198 1.21210 1.19228 1.22013 0.88751 0.93358 1.02007 1.22305 1.00060 0.98276 0.86443 0.76116 0.90883 0.90936 0.92117 0.92677 0.78712 0.93661 0.90679 0.94271 0.91204 0.91012 0.94961 0.99263 0.95855 0.92684 0.95070 0.88986 0.90940 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 19.25 29.55 0.57 -0.88 16 2 C -0.19 -1.90 13.73 -37.12 -0.51 -2.41 16 3 C 0.17 1.39 6.41 34.37 0.22 1.61 16 4 O -0.37 -4.03 10.27 -40.07 -0.41 -4.44 16 5 C 0.03 0.25 5.57 37.16 0.21 0.46 16 6 C 0.12 1.23 3.32 -26.73 -0.09 1.14 16 7 H 0.11 1.32 6.79 -51.93 -0.35 0.97 16 8 O -0.54 -6.57 13.22 -40.07 -0.53 -7.10 16 9 C 0.03 0.28 4.65 -3.82 -0.02 0.26 16 10 N -0.53 -7.47 4.56 -234.46 -1.07 -8.53 16 11 C 0.06 0.89 5.57 -3.76 -0.02 0.87 16 12 C 0.05 0.94 5.61 -3.77 -0.02 0.91 16 13 N -0.53 -11.31 4.70 -235.92 -1.11 -12.41 16 14 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 15 C -0.51 -14.57 9.03 -34.44 -0.31 -14.88 16 16 H 0.08 2.47 7.38 -52.49 -0.39 2.09 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 19 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 23 C 0.07 1.34 5.43 -3.77 -0.02 1.32 16 24 C 0.06 0.91 5.43 -3.77 -0.02 0.89 16 25 H 0.22 1.01 7.80 -54.08 -0.42 0.58 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.37 3.06 9.05 45.56 0.41 3.47 16 31 H 0.05 0.44 8.00 -51.93 -0.42 0.03 16 32 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.82 8.00 -51.93 -0.42 0.40 16 35 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 38 H 0.02 0.57 7.45 -51.93 -0.39 0.19 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 2.01 6.79 -51.93 -0.35 1.66 16 42 H 0.07 1.06 6.74 -51.93 -0.35 0.71 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -34.32 352.71 -8.25 -42.57 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.42 Total: -0.64 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.13 Total: -4.84 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -1.40 Total: -47.94 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.94 Total: -11.54 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.32 -8.25 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251847231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.247 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds