Wall clock time and date at job start Tue Mar 31 2020 02:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46945 * 2 1 4 4 N 1.46905 * 109.46910 * 179.97438 * 3 2 1 5 5 C 1.48042 * 110.99707 * 189.99843 * 4 3 2 6 6 C 1.53481 * 86.05466 * 222.70440 * 5 4 3 7 7 C 1.48040 * 110.99921 * 90.56395 * 4 3 2 8 8 C 1.52762 * 113.55386 * 137.77280 * 6 5 4 9 9 O 1.43392 * 108.24974 * 176.83878 * 8 6 5 10 10 C 1.42815 * 113.34060 * 294.36498 * 9 8 6 11 11 C 1.50284 * 110.49468 * 51.29930 * 10 9 8 12 12 O 1.21285 * 118.96790 * 161.33562 * 11 10 9 13 13 N 1.34270 * 122.05934 * 341.60430 * 11 10 9 14 14 C 1.46499 * 119.38144 * 181.96789 * 13 11 10 15 15 C 1.52999 * 109.47226 * 274.10310 * 14 13 11 16 16 C 1.50706 * 109.46965 * 174.89966 * 15 14 13 17 17 H 1.07997 * 120.00164 * 0.02562 * 16 15 14 18 18 C 1.37868 * 119.99816 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00302 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00048 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46869 * 89.99990 * 20 18 16 22 22 H 1.48494 * 109.47299 * 210.00383 * 20 18 16 23 23 H 1.48495 * 109.47123 * 330.00532 * 20 18 16 24 24 H 1.09000 * 109.46866 * 60.00419 * 1 2 3 25 25 H 1.08997 * 109.47107 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47477 * 300.00044 * 1 2 3 27 27 H 1.08995 * 109.47002 * 239.99928 * 2 1 3 28 28 H 1.08998 * 109.46857 * 120.00129 * 2 1 3 29 29 H 1.08995 * 109.47330 * 60.00128 * 3 2 1 30 30 H 1.08998 * 109.47449 * 299.99767 * 3 2 1 31 31 H 1.09011 * 113.77549 * 108.42177 * 5 4 3 32 32 H 1.08997 * 113.78762 * 336.99286 * 5 4 3 33 33 H 1.09004 * 113.77716 * 23.00505 * 7 4 3 34 34 H 1.08997 * 113.77504 * 251.57649 * 7 4 3 35 35 H 1.08996 * 109.71284 * 57.15389 * 8 6 5 36 36 H 1.08998 * 109.74632 * 296.54525 * 8 6 5 37 37 H 1.09001 * 109.27760 * 291.03293 * 10 9 8 38 38 H 1.09006 * 109.27117 * 171.55319 * 10 9 8 39 39 H 1.09007 * 109.46742 * 34.10282 * 14 13 11 40 40 H 1.08996 * 109.46921 * 154.09629 * 14 13 11 41 41 H 1.09004 * 109.46986 * 294.89872 * 15 14 13 42 42 H 1.09000 * 109.46943 * 54.90167 * 15 14 13 43 43 H 0.97006 * 120.00019 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0394 2.8036 0.2406 6 6 5.0525 2.4896 -0.8687 7 6 4.0401 1.4559 -1.3812 8 6 5.2794 3.6510 -1.8349 9 8 6.2928 3.2636 -2.7725 10 6 7.5742 3.0696 -2.1726 11 6 7.4676 2.1482 -0.9902 12 8 8.4702 1.6059 -0.5758 13 7 6.2963 1.9025 -0.3814 14 6 6.2665 1.0281 0.7936 15 6 6.1538 -0.4294 0.3420 16 6 6.2490 -1.3359 1.5422 17 1 6.3767 -0.9146 2.5284 18 6 6.1720 -2.7030 1.3813 19 7 6.0160 -3.2160 0.1804 20 14 6.2894 -3.8266 2.8689 21 1 4.9303 -4.0643 3.4181 22 1 6.8935 -5.1215 2.4648 23 1 7.1376 -3.1872 3.9066 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 4.4908 2.9323 1.2245 32 1 3.3400 3.5994 -0.0153 33 1 3.3407 1.8529 -2.1170 34 1 4.4920 0.5124 -1.6874 35 1 5.6077 4.5307 -1.2815 36 1 4.3540 3.8747 -2.3655 37 1 7.9675 4.0318 -1.8446 38 1 8.2531 2.6355 -2.9068 39 1 7.1832 1.1606 1.3684 40 1 5.4081 1.2836 1.4148 41 1 5.1954 -0.5829 -0.1541 42 1 6.9629 -0.6585 -0.3515 43 1 5.9622 -4.1780 0.0672 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272451248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:16 Heat of formation + Delta-G solvation = -35.987896 kcal Electronic energy + Delta-G solvation = -23931.879264 eV Core-core repulsion = 20592.651502 eV Total energy + Delta-G solvation = -3339.227762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.27289 -38.89303 -37.37335 -35.08714 -33.63908 -32.63297 -30.29655 -29.54449 -27.54835 -26.48080 -26.26101 -24.15307 -23.19573 -21.08168 -20.88999 -20.58973 -18.12626 -17.46225 -16.68261 -16.15685 -15.86159 -15.50994 -15.30748 -14.95206 -14.41127 -14.35746 -13.97332 -13.80382 -13.50932 -12.93731 -12.78232 -12.57262 -12.51154 -12.16614 -12.04549 -11.66069 -11.43271 -11.20989 -11.02179 -10.86712 -10.82300 -10.63360 -10.56765 -10.40263 -10.32438 -9.71213 -9.60339 -9.18465 -8.86676 -8.53173 -8.18775 -8.01399 -5.86461 -3.86530 2.88726 3.18880 3.39476 3.45394 3.49608 3.64274 3.93833 4.41257 4.53981 4.57643 4.63028 4.89470 5.02146 5.12823 5.21251 5.26648 5.32270 5.35316 5.41503 5.50164 5.52405 5.54425 5.61406 5.74247 5.79389 5.93056 6.14054 6.16841 6.32084 6.33757 6.54674 6.62819 6.66710 6.72791 6.96431 7.12155 7.20372 7.79139 7.86631 8.12339 8.18834 8.48967 8.60663 9.19457 9.74801 11.25198 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.007487 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.897321 B = 3738.996322 C = 5621.558456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.025 3.975 4 N -0.454 5.454 5 C -0.004 4.004 6 C 0.109 3.891 7 C 0.001 3.999 8 C 0.063 3.937 9 O -0.368 6.368 10 C 0.049 3.951 11 C 0.480 3.520 12 O -0.530 6.530 13 N -0.571 5.571 14 C 0.120 3.880 15 C 0.021 3.979 16 C -0.508 4.508 17 H 0.052 0.948 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.031 0.969 42 H 0.012 0.988 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.623 16.027 -4.530 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.104 4.104 4 N -0.176 5.176 5 C -0.133 4.133 6 C 0.021 3.979 7 C -0.128 4.128 8 C -0.015 4.015 9 O -0.286 6.286 10 C -0.031 4.031 11 C 0.266 3.734 12 O -0.407 6.407 13 N -0.303 5.303 14 C 0.000 4.000 15 C -0.017 4.017 16 C -0.547 4.547 17 H 0.070 0.930 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.101 0.899 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.030 0.970 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.973 14.999 -4.130 17.482 hybrid contribution -0.373 -0.140 0.527 0.661 sum -8.346 14.859 -3.602 17.419 Atomic orbital electron populations 1.21739 0.96294 1.01584 1.01008 1.21392 0.94342 0.96034 1.03819 1.22684 0.89427 0.97972 1.00308 1.68758 1.08367 1.22270 1.18204 1.24309 0.95988 0.92725 1.00322 1.22161 0.86384 0.94362 0.95031 1.24542 0.95761 1.01297 0.91241 1.22975 0.92973 0.94665 0.90878 1.88134 1.17940 1.89261 1.33297 1.22805 0.86584 0.98793 0.94906 1.20920 0.83776 0.83263 0.85413 1.90771 1.34922 1.50004 1.65031 1.47507 1.04361 1.47512 1.30925 1.21962 1.01085 0.92193 0.84751 1.19327 0.97662 0.87864 0.96821 1.21077 1.49096 0.91155 0.93353 0.93012 1.24932 0.95617 0.98160 0.95506 1.69977 1.50735 1.11612 1.21111 0.86650 0.78009 0.80313 0.83324 1.20835 1.21391 1.19996 0.93348 0.92652 0.93072 0.91798 0.90524 0.91311 0.94456 0.88443 0.90507 0.90813 0.87712 0.91771 0.87066 0.89946 0.85488 0.91976 0.90318 0.95061 0.96977 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.12 -1.65 6.24 -26.73 -0.17 -1.82 16 3 C 0.02 0.31 4.79 -3.82 -0.02 0.29 16 4 N -0.45 -6.82 4.55 -240.34 -1.09 -7.91 16 5 C 0.00 -0.05 6.51 -2.95 -0.02 -0.06 16 6 C 0.11 1.52 1.56 -135.17 -0.21 1.31 16 7 C 0.00 0.02 6.56 -2.94 -0.02 0.00 16 8 C 0.06 0.67 6.09 37.04 0.23 0.89 16 9 O -0.37 -4.81 10.84 -35.23 -0.38 -5.19 16 10 C 0.05 0.66 6.94 35.80 0.25 0.91 16 11 C 0.48 8.99 7.61 -11.41 -0.09 8.90 16 12 O -0.53 -12.33 16.56 5.55 0.09 -12.24 16 13 N -0.57 -10.45 2.66 -162.13 -0.43 -10.88 16 14 C 0.12 2.63 4.41 -4.04 -0.02 2.62 16 15 C 0.02 0.57 5.06 -27.88 -0.14 0.43 16 16 C -0.51 -14.91 9.11 -34.44 -0.31 -15.23 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -27.77 13.29 55.43 0.74 -27.03 16 20 Si 0.89 22.52 29.54 -169.99 -5.02 17.49 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 30 H 0.04 0.40 7.38 -51.93 -0.38 0.02 16 31 H 0.10 1.26 6.99 -51.92 -0.36 0.90 16 32 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 33 H 0.07 0.87 7.23 -51.93 -0.38 0.50 16 34 H 0.10 1.98 6.90 -51.93 -0.36 1.62 16 35 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 36 H 0.11 0.89 7.86 -51.93 -0.41 0.48 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.06 1.47 7.49 -51.93 -0.39 1.08 16 40 H 0.08 1.62 5.44 -51.93 -0.28 1.34 16 41 H 0.03 0.87 6.04 -51.93 -0.31 0.55 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -34.74 339.60 -8.28 -43.01 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.05 Total: -0.97 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.25 Total: -1.41 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.79 Total: -45.82 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.29 Total: -17.43 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.74 -8.28 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272451248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.027 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds