Wall clock time and date at job start Tue Mar 31 2020 02:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47449 * 2 1 4 4 N 1.46901 * 109.47458 * 120.00423 * 2 1 3 5 5 C 1.48037 * 111.00014 * 66.00838 * 4 2 1 6 6 C 1.53501 * 86.04454 * 137.28984 * 5 4 2 7 7 C 1.48039 * 111.00076 * 165.45266 * 4 2 1 8 8 C 1.52781 * 113.49714 * 222.17436 * 6 5 4 9 9 O 1.43385 * 108.24462 * 273.90372 * 8 6 5 10 10 C 1.42821 * 113.33328 * 294.34911 * 9 8 6 11 11 C 1.50277 * 110.50322 * 51.29367 * 10 9 8 12 12 O 1.21279 * 118.97268 * 161.62288 * 11 10 9 13 13 N 1.34266 * 122.05758 * 341.64075 * 11 10 9 14 14 C 1.46504 * 119.38070 * 181.93164 * 13 11 10 15 15 C 1.52997 * 109.47156 * 275.58788 * 14 13 11 16 16 C 1.50700 * 109.47275 * 178.03959 * 15 14 13 17 17 H 1.08000 * 119.99580 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00268 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99957 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00036 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47336 * 89.99895 * 20 18 16 22 22 H 1.48498 * 109.47033 * 209.99832 * 20 18 16 23 23 H 1.48503 * 109.47320 * 329.99785 * 20 18 16 24 24 H 1.09001 * 109.46740 * 299.99850 * 1 2 3 25 25 H 1.08995 * 109.47650 * 59.99272 * 1 2 3 26 26 H 1.08996 * 109.47414 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46740 * 240.00150 * 2 1 3 28 28 H 1.08999 * 109.46666 * 65.20608 * 3 2 1 29 29 H 1.08997 * 109.47398 * 185.20819 * 3 2 1 30 30 H 1.09003 * 109.47035 * 305.20747 * 3 2 1 31 31 H 1.08996 * 113.78362 * 23.00930 * 5 4 2 32 32 H 1.09004 * 113.78512 * 251.57123 * 5 4 2 33 33 H 1.09004 * 113.78344 * 108.42051 * 7 4 2 34 34 H 1.09000 * 113.78362 * 336.99117 * 7 4 2 35 35 H 1.09004 * 109.72267 * 154.20844 * 8 6 5 36 36 H 1.08995 * 109.69790 * 33.58970 * 8 6 5 37 37 H 1.09004 * 109.26950 * 171.55683 * 10 9 8 38 38 H 1.09001 * 109.27065 * 291.02532 * 10 9 8 39 39 H 1.08994 * 109.47003 * 35.59377 * 14 13 11 40 40 H 1.08997 * 109.46945 * 155.59250 * 14 13 11 41 41 H 1.08994 * 109.47888 * 298.04285 * 15 14 13 42 42 H 1.09008 * 109.47194 * 58.04380 * 15 14 13 43 43 H 0.97000 * 119.99559 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.6668 -2.1298 1.1633 6 6 3.0915 -2.3834 1.6753 7 6 3.4578 -1.0203 1.0727 8 6 3.7845 -3.5602 0.9903 9 8 3.4223 -4.7609 1.6852 10 6 3.9180 -4.8113 3.0236 11 6 3.5564 -3.5561 3.7666 12 8 3.5930 -3.5597 4.9788 13 7 3.1937 -2.4308 3.1303 14 6 2.8942 -1.2281 3.9113 15 6 1.4402 -1.2764 4.3850 16 6 1.1460 -0.0628 5.2286 17 1 1.9188 0.6699 5.4085 18 6 -0.1095 0.1121 5.7707 19 7 -1.0506 -0.7799 5.5511 20 14 -0.4743 1.6168 6.8158 21 1 -0.9682 2.7151 5.9469 22 1 -1.5106 1.2794 7.8244 23 1 0.7660 2.0520 7.5069 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.7548 1.9286 0.9329 29 1 3.1260 1.4439 -0.0933 30 1 1.6026 1.9826 -0.8397 31 1 1.4859 -2.5130 0.1591 32 1 0.8883 -2.4093 1.8734 33 1 4.1040 -0.4171 1.7105 34 1 3.8070 -1.0751 0.0416 35 1 4.8653 -3.4243 1.0299 36 1 3.4594 -3.6241 -0.0481 37 1 3.4842 -5.6702 3.5358 38 1 5.0027 -4.9166 3.0017 39 1 3.5566 -1.1819 4.7757 40 1 3.0449 -0.3449 3.2906 41 1 0.7765 -1.2875 3.5205 42 1 1.2807 -2.1777 4.9770 43 1 -1.9338 -0.6570 5.9329 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273914919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:17 Heat of formation + Delta-G solvation = -32.866974 kcal Electronic energy + Delta-G solvation = -24207.730164 eV Core-core repulsion = 20868.637736 eV Total energy + Delta-G solvation = -3339.092429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.31778 -38.99689 -37.38017 -35.23417 -33.41598 -32.43056 -29.92816 -29.29024 -27.63982 -27.02756 -25.59336 -24.78445 -23.99528 -21.21566 -20.80210 -20.04523 -18.10161 -17.42075 -16.71027 -16.25356 -15.88176 -15.50624 -15.08036 -14.79590 -14.40785 -14.33949 -14.05657 -13.63936 -13.36847 -12.82245 -12.72175 -12.56578 -12.20942 -12.13132 -11.96657 -11.82273 -11.63513 -11.22435 -11.04461 -10.92309 -10.83703 -10.70309 -10.62863 -10.52042 -10.31216 -9.70190 -9.60622 -9.18286 -8.85638 -8.50490 -8.18882 -8.01027 -5.86502 -3.86544 2.89518 3.19463 3.39228 3.45219 3.49289 3.64599 3.94085 4.41950 4.54408 4.57483 4.63047 4.91412 4.99997 5.09204 5.14779 5.25757 5.31714 5.35476 5.44899 5.47064 5.50170 5.60787 5.78256 5.80663 5.92423 5.99811 6.02661 6.18306 6.33212 6.35087 6.46519 6.61645 6.66717 6.73689 6.97223 7.12502 7.23986 7.79342 7.86595 8.13196 8.18534 8.49073 8.61070 9.19487 9.74735 11.25230 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.007373 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.376265 B = 3796.777022 C = 5291.966924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 C -0.141 4.141 4 N -0.448 5.448 5 C 0.003 3.997 6 C 0.109 3.891 7 C -0.002 4.002 8 C 0.063 3.937 9 O -0.368 6.368 10 C 0.049 3.951 11 C 0.480 3.520 12 O -0.531 6.531 13 N -0.571 5.571 14 C 0.120 3.880 15 C 0.021 3.979 16 C -0.507 4.507 17 H 0.052 0.948 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.029 0.971 42 H 0.013 0.987 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.532 -3.117 -15.924 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 C -0.199 4.199 4 N -0.171 5.171 5 C -0.127 4.127 6 C 0.020 3.980 7 C -0.132 4.132 8 C -0.015 4.015 9 O -0.286 6.286 10 C -0.031 4.031 11 C 0.266 3.734 12 O -0.408 6.408 13 N -0.303 5.303 14 C 0.000 4.000 15 C -0.016 4.016 16 C -0.546 4.546 17 H 0.070 0.930 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.200 1.200 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.047 0.953 42 H 0.031 0.969 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.019 -2.861 -14.776 17.546 hybrid contribution -0.044 0.665 -0.104 0.675 sum 8.975 -2.196 -14.881 17.516 Atomic orbital electron populations 1.21789 0.93949 1.02126 1.02368 1.22160 0.96590 0.96022 0.91549 1.21756 1.00218 0.95311 1.02603 1.68874 1.03303 1.10439 1.34488 1.24419 0.98051 0.89422 1.00803 1.22183 0.97293 0.95628 0.82875 1.24303 0.93912 0.94883 1.00116 1.22978 0.98831 0.83146 0.96532 1.88133 1.76713 1.39042 1.24742 1.22803 1.00465 0.97272 0.82560 1.20910 0.78208 0.85484 0.88754 1.90769 1.52553 1.83823 1.13607 1.47510 1.65765 1.12706 1.04306 1.21961 1.00732 0.83770 0.93518 1.19311 0.89108 0.96876 0.96327 1.21065 0.96348 1.06623 1.30541 0.93014 1.24934 0.96436 0.96270 0.96597 1.69977 1.03165 1.34826 1.45490 0.86650 0.77967 0.83382 0.80284 1.20852 1.21400 1.20000 0.90949 0.92779 0.92783 0.94253 0.91116 0.93230 0.92687 0.90909 0.87700 0.88515 0.90547 0.91785 0.87090 0.85501 0.89954 0.92141 0.90117 0.95283 0.96897 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.19 37.15 0.34 -1.59 16 2 C 0.05 0.57 2.26 -67.71 -0.15 0.42 16 3 C -0.14 -1.67 9.25 37.16 0.34 -1.33 16 4 N -0.45 -6.69 4.52 -232.37 -1.05 -7.74 16 5 C 0.00 0.04 5.54 -2.94 -0.02 0.02 16 6 C 0.11 1.51 1.56 -135.17 -0.21 1.30 16 7 C 0.00 -0.03 5.94 -2.96 -0.02 -0.05 16 8 C 0.06 0.67 6.09 37.05 0.23 0.90 16 9 O -0.37 -4.82 10.84 -35.23 -0.38 -5.20 16 10 C 0.05 0.66 6.94 35.80 0.25 0.91 16 11 C 0.48 8.99 7.59 -11.42 -0.09 8.91 16 12 O -0.53 -12.34 16.47 5.56 0.09 -12.25 16 13 N -0.57 -10.44 2.67 -162.13 -0.43 -10.87 16 14 C 0.12 2.63 4.40 -4.04 -0.02 2.61 16 15 C 0.02 0.58 5.15 -27.88 -0.14 0.44 16 16 C -0.51 -14.84 9.11 -34.44 -0.31 -15.15 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -27.79 13.29 55.43 0.74 -27.05 16 20 Si 0.89 22.48 29.54 -169.99 -5.02 17.45 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.72 7.38 -51.93 -0.38 0.34 16 27 H 0.04 0.42 7.69 -51.93 -0.40 0.03 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.53 7.82 -51.93 -0.41 0.12 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.86 7.61 -51.93 -0.40 0.47 16 32 H 0.10 1.97 6.85 -51.93 -0.36 1.62 16 33 H 0.10 1.26 7.02 -51.93 -0.36 0.90 16 34 H 0.08 0.70 7.66 -51.93 -0.40 0.30 16 35 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 36 H 0.11 0.90 7.86 -51.93 -0.41 0.49 16 37 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.43 7.54 -51.93 -0.39 1.04 16 40 H 0.08 1.67 5.39 -51.93 -0.28 1.39 16 41 H 0.03 0.81 6.15 -51.93 -0.32 0.49 16 42 H 0.01 0.39 8.03 -51.92 -0.42 -0.02 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 337.15 15.07 5.08 5.08 Total: -1.00 -34.63 337.15 -7.89 -42.52 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -7.02 Total: -0.96 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 0.10 Total: -0.98 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.75 Total: -45.67 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.29 Total: -17.45 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.63 -7.89 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273914919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.653 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds