Wall clock time and date at job start Tue Mar 31 2020 02:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 55.00475 * 3 2 1 5 5 C 1.52997 * 109.47232 * 175.00399 * 3 2 1 6 6 N 1.46506 * 109.47289 * 295.00347 * 3 2 1 7 7 C 1.46266 * 118.71470 * 119.72893 * 6 3 2 8 8 C 1.52728 * 109.47570 * 163.74714 * 7 6 3 9 9 C 1.53384 * 113.79599 * 176.74357 * 8 7 6 10 10 N 1.48060 * 86.02388 * 91.51132 * 9 8 7 11 11 C 1.46910 * 110.99764 * 137.23304 * 10 9 8 12 12 C 1.50697 * 109.47125 * 90.54689 * 11 10 9 13 13 H 1.08000 * 120.00317 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99809 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00012 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00003 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47088 * 59.99981 * 16 14 12 18 18 H 1.48498 * 109.47103 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46997 * 300.00146 * 16 14 12 20 20 C 1.48051 * 90.84298 * 24.30614 * 10 9 8 21 21 O 1.42681 * 112.32386 * 45.62001 * 8 7 6 22 22 C 1.43046 * 112.94861 * 295.70066 * 21 8 7 23 23 C 1.33719 * 118.71110 * 300.00063 * 6 3 2 24 24 O 1.21271 * 118.38710 * 3.22368 * 23 6 3 25 25 H 1.08994 * 109.47281 * 59.99487 * 1 2 3 26 26 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46818 * 300.00038 * 1 2 3 28 28 H 1.09002 * 109.46818 * 239.99962 * 2 1 3 29 29 H 1.09004 * 109.47686 * 120.00185 * 2 1 3 30 30 H 1.09001 * 109.47375 * 60.00133 * 5 3 2 31 31 H 1.09000 * 109.47140 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.47230 * 299.99295 * 5 3 2 33 33 H 1.09005 * 109.45653 * 283.95249 * 7 6 3 34 34 H 1.09004 * 109.45751 * 43.89703 * 7 6 3 35 35 H 1.08999 * 113.78547 * 205.78957 * 9 8 7 36 36 H 1.09003 * 113.78521 * 337.23315 * 9 8 7 37 37 H 1.08999 * 109.46869 * 210.55143 * 11 10 9 38 38 H 1.09004 * 109.46827 * 330.54665 * 11 10 9 39 39 H 0.96997 * 120.00155 * 180.02562 * 15 14 12 40 40 H 1.09000 * 113.78687 * 221.41612 * 20 10 9 41 41 H 1.08999 * 113.79085 * 89.97429 * 20 10 9 42 42 H 1.09002 * 109.35249 * 287.08025 * 22 21 8 43 43 H 1.09001 * 109.23034 * 167.44818 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5648 1.4443 0.1256 6 7 1.6524 2.0975 -1.2518 7 6 0.7992 3.2839 -1.1892 8 6 0.8541 4.0217 -2.5253 9 6 -0.0702 5.2437 -2.5960 10 7 1.0923 6.0222 -2.1117 11 6 1.2183 7.2902 -2.8429 12 6 0.4444 8.3642 -2.1228 13 1 -0.0874 8.1287 -1.2128 14 6 0.4154 9.6477 -2.6258 15 7 1.0626 9.9344 -3.7342 16 14 -0.5433 10.9793 -1.7329 17 1 -0.0006 11.1441 -0.3605 18 1 -0.4160 12.2610 -2.4722 19 1 -1.9747 10.5916 -1.6560 20 6 2.0247 5.0052 -2.6486 21 8 0.7259 3.1379 -3.6381 22 6 1.8112 2.2120 -3.7429 23 6 2.0881 1.5842 -2.4071 24 8 2.7385 0.5612 -2.3747 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9995 0.9052 -0.7162 31 1 3.9282 2.4719 0.1261 32 1 3.8533 0.9570 1.0570 33 1 -0.2271 2.9823 -0.9791 34 1 1.1527 3.9441 -0.3972 35 1 -0.3812 5.5018 -3.6083 36 1 -0.9004 5.2083 -1.8904 37 1 2.2690 7.5746 -2.8985 38 1 0.8207 7.1694 -3.8506 39 1 1.0425 10.8374 -4.0879 40 1 2.8596 4.7803 -1.9849 41 1 2.3352 5.1925 -3.6765 42 1 2.7023 2.7373 -4.0867 43 1 1.5513 1.4339 -4.4606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:43 Heat of formation + Delta-G solvation = -36.302885 kcal Electronic energy + Delta-G solvation = -23542.664301 eV Core-core repulsion = 20203.422880 eV Total energy + Delta-G solvation = -3339.241421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.29841 -39.43476 -36.73898 -36.28546 -33.31450 -32.83624 -30.31058 -29.86098 -27.87719 -26.50904 -25.75932 -24.51885 -23.86816 -22.45029 -21.15119 -19.63494 -18.06733 -17.69512 -16.69234 -16.38472 -16.05044 -15.69157 -15.17650 -14.87896 -14.53040 -14.14188 -13.96918 -13.71602 -13.61562 -13.29632 -13.14962 -12.95359 -12.36149 -12.23936 -12.16743 -11.94658 -11.90056 -11.61878 -11.33949 -11.12764 -11.05294 -10.94340 -10.76616 -10.52720 -10.34790 -10.10947 -9.72300 -9.36677 -9.15524 -8.74818 -8.49804 -8.00086 -6.08946 -4.11091 2.47568 2.75328 3.30249 3.34554 3.37146 3.61312 4.19651 4.36641 4.46540 4.65274 4.70088 4.76767 4.92786 5.01051 5.15240 5.25958 5.26706 5.29636 5.40171 5.48900 5.51328 5.56012 5.62788 5.68888 5.82058 5.85231 5.89005 5.97965 5.99258 6.11240 6.17596 6.21147 6.26969 6.43089 6.54975 6.95206 7.08109 7.36822 7.54905 7.74309 7.99674 8.03279 8.34194 8.95632 9.53444 11.01982 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028814 B = 0.003960 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.509291 B = 7069.085653 C = 7364.318987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.144 3.856 4 H 0.086 0.914 5 C -0.170 4.170 6 N -0.594 5.594 7 C 0.117 3.883 8 C 0.059 3.941 9 C 0.041 3.959 10 N -0.467 5.467 11 C 0.162 3.838 12 C -0.508 4.508 13 H 0.064 0.936 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.019 4.019 21 O -0.358 6.358 22 C 0.049 3.951 23 C 0.492 3.508 24 O -0.546 6.546 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.030 0.970 38 H 0.006 0.994 39 H 0.263 0.737 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 -17.293 5.056 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C 0.041 3.959 4 H 0.104 0.896 5 C -0.227 4.227 6 N -0.327 5.327 7 C -0.006 4.006 8 C 0.019 3.981 9 C -0.088 4.088 10 N -0.191 5.191 11 C 0.037 3.963 12 C -0.547 4.547 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.728 3.272 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.148 4.148 21 O -0.276 6.276 22 C -0.031 4.031 23 C 0.281 3.719 24 O -0.425 6.425 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.048 0.952 38 H 0.023 0.977 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.768 -17.423 5.492 18.285 hybrid contribution -0.317 0.873 -0.351 0.993 sum 0.451 -16.551 5.142 17.337 Atomic orbital electron populations 1.21735 0.95883 1.01346 1.01626 1.22013 0.95965 0.96336 1.03922 1.21156 0.95591 0.93707 0.85413 0.89570 1.22188 0.95023 1.02426 1.03106 1.47616 1.50105 1.28781 1.06189 1.21850 0.95006 0.85749 0.97961 1.23710 1.00036 0.88683 0.85703 1.23886 0.95681 0.87891 1.01363 1.68661 1.00592 1.02428 1.47459 1.20252 0.97958 0.85845 0.92293 1.21032 1.30815 0.93144 1.09669 0.91822 1.25001 0.95808 0.98712 0.95071 1.69940 1.42570 1.20605 1.20715 0.86527 0.80348 0.80655 0.79691 1.20153 1.21338 1.20191 1.24389 0.96548 0.93518 1.00346 1.88161 1.44274 1.47437 1.47722 1.22705 0.92725 0.93376 0.94260 1.20839 0.79522 0.84872 0.86699 1.90616 1.40513 1.23907 1.87457 0.92818 0.92959 0.93034 0.89068 0.91481 0.90339 0.92551 0.91866 0.90540 0.88202 0.90026 0.89031 0.95175 0.97657 0.92769 0.90053 0.90855 0.89437 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.80 37.16 0.36 -1.09 16 2 C -0.14 -1.52 5.25 -26.73 -0.14 -1.66 16 3 C 0.14 1.57 2.64 -67.93 -0.18 1.39 16 4 H 0.09 0.83 7.88 -51.93 -0.41 0.42 16 5 C -0.17 -1.85 9.09 37.16 0.34 -1.51 16 6 N -0.59 -7.32 2.26 -166.98 -0.38 -7.69 16 7 C 0.12 1.46 5.68 -4.31 -0.02 1.44 16 8 C 0.06 0.87 1.21 -90.43 -0.11 0.76 16 9 C 0.04 0.71 7.37 -2.99 -0.02 0.68 16 10 N -0.47 -9.32 6.04 -242.42 -1.46 -10.79 16 11 C 0.16 4.05 4.55 -4.97 -0.02 4.03 16 12 C -0.51 -13.89 9.36 -34.44 -0.32 -14.21 16 13 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 16 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.02 -0.31 6.66 -2.99 -0.02 -0.33 16 21 O -0.36 -5.20 10.66 -35.23 -0.38 -5.58 16 22 C 0.05 0.61 6.67 35.75 0.24 0.85 16 23 C 0.49 6.67 7.00 -11.71 -0.08 6.58 16 24 O -0.55 -8.33 12.65 5.56 0.07 -8.26 16 25 H 0.05 0.60 7.75 -51.93 -0.40 0.19 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 1.18 5.76 -51.93 -0.30 0.88 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.01 6.11 -51.93 -0.32 0.70 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.26 7.99 -51.93 -0.41 0.85 16 35 H 0.08 1.50 7.48 -51.93 -0.39 1.11 16 36 H 0.09 1.44 8.09 -51.93 -0.42 1.02 16 37 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.01 0.15 7.38 -51.93 -0.38 -0.24 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 40 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 41 H 0.07 1.26 7.92 -51.93 -0.41 0.85 16 42 H 0.09 1.03 7.92 -51.93 -0.41 0.61 16 43 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -29.96 340.06 -8.59 -38.55 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.20 Total: -0.44 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -1.10 Total: -43.94 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.31 Total: -13.83 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.96 -8.59 -38.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.244 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds