Wall clock time and date at job start Tue Mar 31 2020 02:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 H 1.08999 * 109.46966 * 304.99889 * 3 2 1 5 5 C 1.52994 * 109.46975 * 185.00125 * 3 2 1 6 6 N 1.46503 * 109.47148 * 64.99790 * 3 2 1 7 7 C 1.34309 * 119.40549 * 60.48228 * 6 3 2 8 8 O 1.21284 * 118.99705 * 2.03510 * 7 6 3 9 9 C 1.50280 * 122.01142 * 182.03742 * 7 6 3 10 10 O 1.42818 * 110.54314 * 341.44796 * 9 7 6 11 11 C 1.43403 * 113.34736 * 51.35619 * 10 9 7 12 12 C 1.45808 * 119.40896 * 240.50028 * 6 3 2 13 13 C 1.52968 * 114.29915 * 31.69797 * 12 6 3 14 14 N 1.47585 * 87.80674 * 220.33346 * 13 12 6 15 15 C 1.46901 * 110.99503 * 138.30678 * 14 13 12 16 16 C 1.50704 * 109.46633 * 169.99958 * 15 14 13 17 17 H 1.07993 * 120.00389 * 0.02562 * 16 15 14 18 18 C 1.37886 * 119.99720 * 179.72152 * 16 15 14 19 19 N 1.31516 * 120.00093 * 0.28377 * 18 16 15 20 20 Si 1.86797 * 119.99857 * 180.27543 * 18 16 15 21 21 H 1.48505 * 109.47201 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46985 * 120.00685 * 20 18 16 23 23 H 1.48501 * 109.47388 * 240.00525 * 20 18 16 24 24 C 1.47581 * 87.93966 * 26.57486 * 14 13 12 25 25 H 1.08998 * 109.47572 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46862 * 300.00345 * 1 2 3 27 27 H 1.09002 * 109.47040 * 59.99838 * 1 2 3 28 28 H 1.08997 * 109.47014 * 239.99686 * 2 1 3 29 29 H 1.08997 * 109.46578 * 120.00146 * 2 1 3 30 30 H 1.08999 * 109.47081 * 299.99693 * 5 3 2 31 31 H 1.08995 * 109.47588 * 60.00049 * 5 3 2 32 32 H 1.08998 * 109.47246 * 180.02562 * 5 3 2 33 33 H 1.08998 * 109.26365 * 221.17384 * 9 7 6 34 34 H 1.09005 * 109.26275 * 101.72422 * 9 7 6 35 35 H 1.09004 * 109.70676 * 174.88780 * 11 10 9 36 36 H 1.08998 * 109.70922 * 54.26828 * 11 10 9 37 37 H 1.08993 * 113.49484 * 105.60493 * 13 12 6 38 38 H 1.08998 * 113.49215 * 335.06480 * 13 12 6 39 39 H 1.08998 * 109.46945 * 50.00458 * 15 14 13 40 40 H 1.08999 * 109.47406 * 289.99650 * 15 14 13 41 41 H 0.96993 * 120.00306 * 179.97438 * 19 18 16 42 42 H 1.09000 * 113.49317 * 88.16309 * 24 14 13 43 43 H 1.09004 * 113.49519 * 218.68998 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 2.0902 1.5994 2.4198 8 8 2.8291 0.6376 2.4088 9 6 1.6925 2.1973 3.7399 10 8 1.1998 3.5257 3.5603 11 6 0.1776 3.6223 2.5592 12 6 0.7981 3.2782 1.2074 13 6 -0.1956 3.2927 0.0445 14 7 0.0925 4.7320 -0.1094 15 6 0.2130 5.0960 -1.5275 16 6 0.2607 6.5966 -1.6585 17 1 0.2073 7.2176 -0.7766 18 6 0.3789 7.1764 -2.9039 19 7 0.4443 6.4201 -3.9779 20 14 0.4458 9.0361 -3.0658 21 1 0.3545 9.6539 -1.7184 22 1 1.7262 9.4316 -3.7055 23 1 -0.6898 9.5015 -3.9020 24 6 1.4186 4.4758 0.4854 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 3.9994 0.9052 0.7161 31 1 3.8532 0.9569 -1.0571 32 1 3.9283 2.4718 -0.1253 33 1 2.5598 2.2215 4.3996 34 1 0.9141 1.5832 4.1929 35 1 -0.2178 4.6378 2.5344 36 1 -0.6251 2.9202 2.7845 37 1 -1.2218 3.0850 0.3472 38 1 0.1236 2.6922 -0.8073 39 1 -0.6466 4.7106 -2.0758 40 1 1.1274 4.6663 -1.9364 41 1 0.5271 6.8279 -4.8540 42 1 2.1766 4.1970 -0.2466 43 1 1.7523 5.2646 1.1596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:48 Heat of formation + Delta-G solvation = -33.067063 kcal Electronic energy + Delta-G solvation = -24174.332787 eV Core-core repulsion = 20835.231681 eV Total energy + Delta-G solvation = -3339.101105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52024 -39.06249 -37.69612 -35.86824 -33.25848 -32.44478 -30.30905 -29.79924 -28.00015 -26.41493 -25.68962 -24.70002 -23.63792 -22.24967 -21.12743 -19.95223 -18.34098 -17.54797 -16.68690 -16.38521 -15.93152 -15.41579 -15.11056 -14.93718 -14.57991 -14.36065 -13.92066 -13.68999 -13.57770 -13.47469 -13.04219 -12.61561 -12.54672 -12.18393 -11.95907 -11.90015 -11.71050 -11.35729 -11.27118 -11.04311 -10.90593 -10.89486 -10.70239 -10.58607 -10.34341 -10.22390 -9.93489 -9.37561 -9.06903 -8.57525 -8.50187 -8.04671 -6.10720 -4.12160 2.48039 2.78986 3.27275 3.34991 3.40267 3.67035 4.21931 4.36958 4.55737 4.58744 4.77847 4.84907 4.98348 5.10837 5.11391 5.23794 5.25120 5.31074 5.42079 5.48882 5.62452 5.68349 5.72042 5.80543 5.91797 5.95018 5.99005 6.03602 6.10353 6.14733 6.21491 6.29784 6.35298 6.44246 6.63854 6.78756 7.03650 7.46641 7.52114 7.74182 7.98683 8.08107 8.33554 8.95499 9.52620 11.00370 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.005051 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.856712 B = 5542.252962 C = 6085.552257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.138 3.862 4 H 0.092 0.908 5 C -0.169 4.169 6 N -0.576 5.576 7 C 0.489 3.511 8 O -0.542 6.542 9 C 0.047 3.953 10 O -0.367 6.367 11 C 0.084 3.916 12 C 0.096 3.904 13 C -0.007 4.007 14 N -0.459 5.459 15 C 0.162 3.838 16 C -0.505 4.505 17 H 0.065 0.935 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.899 3.101 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.010 3.990 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.126 0.874 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.030 0.970 40 H 0.003 0.997 41 H 0.261 0.739 42 H 0.069 0.931 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -11.151 11.314 15.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.036 3.964 4 H 0.110 0.890 5 C -0.227 4.227 6 N -0.308 5.308 7 C 0.278 3.722 8 O -0.421 6.421 9 C -0.033 4.033 10 O -0.285 6.285 11 C 0.007 3.993 12 C 0.009 3.991 13 C -0.137 4.137 14 N -0.182 5.182 15 C 0.036 3.964 16 C -0.544 4.544 17 H 0.083 0.917 18 C -0.147 4.147 19 N -0.539 5.539 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.121 4.121 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.144 0.856 34 H 0.102 0.898 35 H 0.148 0.852 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.021 0.979 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.628 -10.943 11.465 15.861 hybrid contribution 0.446 0.290 -1.121 1.241 sum 1.074 -10.653 10.344 14.887 Atomic orbital electron populations 1.21774 0.95770 1.01233 1.01843 1.21929 0.96063 0.96152 1.03542 1.21207 0.95721 0.93388 0.86089 0.88973 1.22204 0.94899 1.02508 1.03041 1.47674 1.48857 1.28137 1.06091 1.21078 0.80517 0.84077 0.86572 1.90635 1.36192 1.27825 1.87464 1.22755 1.01423 0.84841 0.94288 1.88191 1.55979 1.26214 1.58078 1.22702 0.88804 1.04697 0.83128 1.22586 0.93134 0.86021 0.97344 1.24262 0.99094 0.94361 0.96022 1.69032 1.16197 1.12453 1.20527 1.20262 0.96432 0.97636 0.82085 1.21104 1.49552 0.90945 0.92769 0.91671 1.25004 0.95319 0.98589 0.95752 1.69954 1.50681 1.35136 0.98138 0.86416 0.77537 0.85141 0.78211 1.19559 1.21079 1.20975 1.24126 0.94291 0.95483 0.98165 0.92988 0.92994 0.92597 0.91222 0.89867 0.90190 0.91921 0.92596 0.85601 0.89780 0.85209 0.91892 0.89897 0.90760 0.95179 0.97877 0.92900 0.91312 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.08 37.16 0.34 -1.37 16 2 C -0.14 -1.72 5.27 -26.73 -0.14 -1.87 16 3 C 0.14 1.91 1.79 -67.93 -0.12 1.78 16 4 H 0.09 1.37 5.45 -51.93 -0.28 1.08 16 5 C -0.17 -2.33 9.10 37.15 0.34 -1.99 16 6 N -0.58 -7.97 2.09 -152.87 -0.32 -8.29 16 7 C 0.49 6.76 7.05 -11.40 -0.08 6.68 16 8 O -0.54 -8.56 12.95 5.55 0.07 -8.49 16 9 C 0.05 0.52 6.93 35.80 0.25 0.77 16 10 O -0.37 -4.68 10.84 -35.23 -0.38 -5.06 16 11 C 0.08 1.04 6.05 36.99 0.22 1.26 16 12 C 0.10 1.37 1.62 -132.97 -0.22 1.15 16 13 C -0.01 -0.12 6.13 -7.29 -0.04 -0.16 16 14 N -0.46 -9.05 6.13 -246.02 -1.51 -10.56 16 15 C 0.16 3.99 4.57 -4.97 -0.02 3.96 16 16 C -0.51 -13.85 9.39 -34.44 -0.32 -14.18 16 17 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 18 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 20 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.01 0.17 6.81 -7.29 -0.05 0.12 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.61 7.75 -51.93 -0.40 0.21 16 27 H 0.05 0.65 7.57 -51.93 -0.39 0.26 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.15 6.07 -51.93 -0.32 0.84 16 30 H 0.08 1.19 5.97 -51.93 -0.31 0.88 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.13 1.66 7.92 -51.93 -0.41 1.25 16 36 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 38 H 0.07 1.20 4.71 -51.93 -0.24 0.96 16 39 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.00 0.09 7.30 -51.93 -0.38 -0.29 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.07 1.30 6.98 -51.93 -0.36 0.94 16 43 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 LS Contribution 332.53 15.07 5.01 5.01 Total: -1.00 -29.95 332.53 -8.23 -38.18 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.87 Total: 0.68 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 0.05 Total: -2.41 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -1.09 Total: -44.23 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.31 Total: -13.54 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.95 -8.23 -38.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.113 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds