Wall clock time and date at job start Tue Mar 31 2020 02:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47181 * 2 1 4 4 C 1.52998 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47013 * 179.97438 * 4 3 2 6 6 C 1.46271 * 118.71402 * 90.00177 * 5 4 3 7 7 C 1.52563 * 109.56650 * 163.92105 * 6 5 4 8 8 C 1.53386 * 113.83604 * 176.52967 * 7 6 5 9 9 N 1.48062 * 86.02647 * 91.25561 * 8 7 6 10 10 C 1.46893 * 110.99861 * 137.22976 * 9 8 7 11 11 C 1.50708 * 109.47304 * 70.54747 * 10 9 8 12 12 H 1.07998 * 119.99573 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00114 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99961 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00194 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.46875 * 90.00122 * 15 13 11 17 17 H 1.48493 * 109.47036 * 210.00123 * 15 13 11 18 18 H 1.48500 * 109.46905 * 330.00187 * 15 13 11 19 19 C 1.48054 * 90.84388 * 24.30127 * 9 8 7 20 20 O 1.42681 * 112.47408 * 45.21743 * 7 6 5 21 21 C 1.43055 * 112.94678 * 295.89677 * 20 7 6 22 22 C 1.33712 * 118.71904 * 270.00056 * 5 4 3 23 23 O 1.21282 * 118.37931 * 3.26058 * 22 5 4 24 24 H 1.09006 * 109.46337 * 60.00311 * 1 2 3 25 25 H 1.08997 * 109.47044 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47535 * 300.00556 * 1 2 3 27 27 H 1.08994 * 109.47535 * 239.99444 * 2 1 3 28 28 H 1.09000 * 109.46681 * 119.99419 * 2 1 3 29 29 H 1.09004 * 109.47406 * 59.99454 * 3 2 1 30 30 H 1.08996 * 109.47168 * 299.99677 * 3 2 1 31 31 H 1.08996 * 109.47392 * 60.00240 * 4 3 2 32 32 H 1.09000 * 109.47156 * 299.99639 * 4 3 2 33 33 H 1.08997 * 109.45817 * 43.88934 * 6 5 4 34 34 H 1.09004 * 109.45799 * 283.94482 * 6 5 4 35 35 H 1.09001 * 113.78355 * 205.53466 * 8 7 6 36 36 H 1.09007 * 113.78108 * 336.97316 * 8 7 6 37 37 H 1.09007 * 109.47224 * 190.54378 * 10 9 8 38 38 H 1.08997 * 109.47643 * 310.54707 * 10 9 8 39 39 H 0.97004 * 120.00043 * 179.97438 * 14 13 11 40 40 H 1.08993 * 113.78984 * 221.42158 * 19 9 8 41 41 H 1.09002 * 113.78491 * 89.97597 * 19 9 8 42 42 H 1.09000 * 109.34644 * 167.53374 * 21 20 7 43 43 H 1.08998 * 109.34591 * 287.08889 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2921 3.4870 1.2826 7 6 5.1532 4.7277 1.0667 8 6 5.3896 5.5477 2.3412 9 7 6.6047 4.7216 2.5239 10 6 7.7439 5.5472 2.9462 11 6 7.5288 6.0131 4.3632 12 1 6.6349 5.7250 4.8964 13 6 8.4730 6.8070 4.9787 14 7 8.2850 7.2140 6.2151 15 14 10.0195 7.3047 4.0565 16 1 9.7774 8.5806 3.3365 17 1 11.1345 7.4842 5.0207 18 1 10.3758 6.2447 3.0794 19 6 6.6606 4.4436 1.0707 20 8 4.7179 5.5068 -0.0466 21 6 4.8384 4.8147 -1.2928 22 6 4.2730 3.4287 -1.1729 23 8 3.9971 2.8287 -2.1901 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.9285 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 4.8052 2.8019 1.9575 34 1 3.3372 3.7794 1.7195 35 1 5.5982 6.6010 2.1539 36 1 4.6328 5.3926 3.1103 37 1 8.6594 4.9579 2.8925 38 1 7.8295 6.4121 2.2884 39 1 8.9496 7.7723 6.6483 40 1 6.9140 3.4112 0.8300 41 1 7.2463 5.1694 0.5065 42 1 4.2946 5.3612 -2.0634 43 1 5.8904 4.7528 -1.5712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:37 Heat of formation + Delta-G solvation = -42.620994 kcal Electronic energy + Delta-G solvation = -22928.372143 eV Core-core repulsion = 19588.856749 eV Total energy + Delta-G solvation = -3339.515395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.24002 -39.33167 -36.71525 -36.40607 -34.44877 -32.86435 -30.56120 -29.68246 -28.09574 -26.72793 -25.84959 -24.54169 -23.81027 -21.55430 -21.22277 -20.00595 -18.21548 -17.80062 -16.97840 -16.67251 -16.08081 -15.85576 -15.35070 -15.12749 -14.86210 -14.40465 -14.02963 -13.94790 -13.62049 -13.23384 -13.15425 -12.99479 -12.70464 -12.57261 -12.28616 -12.08291 -11.84635 -11.53586 -11.48199 -11.33221 -11.22117 -10.98747 -10.77412 -10.73114 -10.25668 -10.03541 -9.87936 -9.39482 -9.36616 -8.85721 -8.69305 -8.18135 -6.14425 -4.13671 2.40608 2.69689 3.22111 3.30454 3.31409 3.54288 4.15664 4.33772 4.38171 4.52903 4.62651 4.71230 4.71938 4.87527 5.02114 5.10073 5.16764 5.22822 5.33627 5.37709 5.41049 5.49603 5.54220 5.57561 5.62490 5.71825 5.73781 5.87389 5.89638 5.99697 6.04361 6.12312 6.17419 6.28534 6.33428 6.66043 6.87294 7.13380 7.26340 7.59356 7.64722 7.93418 8.47981 8.92255 9.46218 10.98465 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027497 B = 0.003718 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.050246 B = 7528.583611 C = 8128.265308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.134 4.134 4 C 0.110 3.890 5 N -0.600 5.600 6 C 0.117 3.883 7 C 0.057 3.943 8 C 0.050 3.950 9 N -0.460 5.460 10 C 0.131 3.869 11 C -0.515 4.515 12 H 0.081 0.919 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.875 3.125 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.267 1.267 19 C -0.024 4.024 20 O -0.356 6.356 21 C 0.050 3.950 22 C 0.490 3.510 23 O -0.551 6.551 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.034 0.966 38 H -0.005 1.005 39 H 0.265 0.735 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.127 0.873 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.705 -10.024 -13.091 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.172 4.172 4 C -0.012 4.012 5 N -0.333 5.333 6 C -0.006 4.006 7 C 0.017 3.983 8 C -0.079 4.079 9 N -0.183 5.183 10 C 0.004 3.996 11 C -0.553 4.553 12 H 0.099 0.901 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.702 3.298 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.192 1.192 19 C -0.154 4.154 20 O -0.274 6.274 21 C -0.029 4.029 22 C 0.278 3.722 23 O -0.430 6.430 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.052 0.948 38 H 0.012 0.988 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.144 0.856 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.799 -10.549 -12.959 19.895 hybrid contribution 1.169 0.909 -0.826 1.696 sum -9.630 -9.640 -13.785 19.382 Atomic orbital electron populations 1.21755 0.95732 1.01524 1.01880 1.21442 0.96046 0.96312 1.02128 1.21938 0.95294 0.97320 1.02658 1.21592 0.94259 0.82006 1.03384 1.47562 1.64929 1.14601 1.06179 1.21809 1.00136 0.93719 0.84925 1.23699 0.93339 0.92499 0.88803 1.23760 0.95066 0.97411 0.91671 1.68549 1.04563 1.33924 1.11311 1.20690 0.90297 0.91167 0.97446 1.20918 1.07826 1.30666 0.95936 0.90135 1.24901 0.97958 0.95514 0.94772 1.69887 1.35701 1.35819 1.12105 0.86858 0.83516 0.79360 0.80023 1.20205 1.21029 1.19184 1.24490 0.94603 1.02263 0.94028 1.88176 1.85958 1.39468 1.13783 1.22677 1.02357 0.89255 0.88639 1.20929 0.78350 0.89618 0.83332 1.90708 1.52051 1.65532 1.34665 0.92797 0.92764 0.92697 0.91865 0.91825 0.91744 0.91526 0.89735 0.90211 0.88028 0.90345 0.89622 0.88640 0.94846 0.98752 0.92517 0.89797 0.90800 0.85569 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.98 5.93 -26.73 -0.16 -1.13 16 3 C -0.13 -1.30 5.53 -26.73 -0.15 -1.44 16 4 C 0.11 1.16 5.27 -4.04 -0.02 1.14 16 5 N -0.60 -7.40 2.83 -174.67 -0.50 -7.90 16 6 C 0.12 1.43 5.79 -4.39 -0.03 1.41 16 7 C 0.06 0.82 1.21 -90.51 -0.11 0.71 16 8 C 0.05 0.85 6.87 -2.99 -0.02 0.83 16 9 N -0.46 -8.81 6.14 -242.39 -1.49 -10.30 16 10 C 0.13 3.02 3.65 -4.98 -0.02 3.00 16 11 C -0.52 -14.05 9.39 -34.44 -0.32 -14.38 16 12 H 0.08 2.38 8.04 -52.49 -0.42 1.96 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 15 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 19 C -0.02 -0.38 6.67 -2.99 -0.02 -0.40 16 20 O -0.36 -5.07 10.66 -35.23 -0.38 -5.44 16 21 C 0.05 0.61 6.67 35.75 0.24 0.85 16 22 C 0.49 6.73 7.57 -11.72 -0.09 6.64 16 23 O -0.55 -8.91 16.33 5.56 0.09 -8.82 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.98 7.29 -51.93 -0.38 0.60 16 32 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 33 H 0.10 1.23 7.88 -51.93 -0.41 0.82 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.57 7.78 -51.93 -0.40 1.17 16 36 H 0.10 1.55 8.09 -51.93 -0.42 1.13 16 37 H 0.03 0.79 7.20 -51.92 -0.37 0.42 16 38 H -0.01 -0.12 7.13 -51.93 -0.37 -0.49 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 41 H 0.07 1.16 7.79 -51.93 -0.40 0.75 16 42 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.09 0.97 7.92 -51.93 -0.41 0.56 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -31.08 344.86 -8.79 -39.87 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.40 Total: -1.18 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -0.42 Total: -1.66 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -1.21 Total: -44.18 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.28 Total: -14.26 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.08 -8.79 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.753 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds