Wall clock time and date at job start Tue Mar 31 2020 02:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47347 * 2 1 4 4 C 1.52999 * 109.47000 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47226 * 174.89894 * 4 3 2 6 6 C 1.34266 * 119.38140 * 274.10479 * 5 4 3 7 7 O 1.21278 * 118.97350 * 2.24203 * 6 5 4 8 8 C 1.50286 * 122.05949 * 181.96339 * 6 5 4 9 9 O 1.42817 * 110.49569 * 341.61256 * 8 6 5 10 10 C 1.43389 * 113.34402 * 51.29360 * 9 8 6 11 11 C 1.45920 * 119.37838 * 94.07694 * 5 4 3 12 12 C 1.53510 * 113.74983 * 295.64298 * 11 5 4 13 13 N 1.48046 * 86.04374 * 91.14682 * 12 11 5 14 14 C 1.46896 * 110.99462 * 137.29320 * 13 12 11 15 15 C 1.50700 * 109.47454 * 70.56189 * 14 13 12 16 16 H 1.07998 * 119.99657 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99998 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99550 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00259 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47238 * 90.00260 * 19 17 15 21 21 H 1.48501 * 109.47035 * 210.00026 * 19 17 15 22 22 H 1.48504 * 109.47116 * 329.99938 * 19 17 15 23 23 C 1.48045 * 90.83026 * 24.37402 * 13 12 11 24 24 H 1.08993 * 109.47341 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46805 * 299.99668 * 1 2 3 26 26 H 1.09000 * 109.46777 * 59.99749 * 1 2 3 27 27 H 1.09004 * 109.46805 * 240.00332 * 2 1 3 28 28 H 1.08997 * 109.47370 * 120.00695 * 2 1 3 29 29 H 1.09004 * 109.46897 * 60.00389 * 3 2 1 30 30 H 1.09000 * 109.47387 * 299.99877 * 3 2 1 31 31 H 1.09007 * 109.47237 * 54.90637 * 4 3 2 32 32 H 1.08996 * 109.47727 * 294.90494 * 4 3 2 33 33 H 1.09001 * 109.26964 * 101.87443 * 8 6 5 34 34 H 1.08992 * 109.27236 * 221.34927 * 8 6 5 35 35 H 1.09004 * 109.70573 * 54.05490 * 10 9 8 36 36 H 1.08998 * 109.70637 * 174.63735 * 10 9 8 37 37 H 1.08997 * 113.78046 * 205.42605 * 12 11 5 38 38 H 1.08997 * 113.78014 * 336.86838 * 12 11 5 39 39 H 1.09010 * 109.46839 * 190.56054 * 14 13 12 40 40 H 1.09002 * 109.47772 * 310.55650 * 14 13 12 41 41 H 0.97007 * 119.99815 * 180.02562 * 18 17 15 42 42 H 1.09004 * 113.77301 * 221.34196 * 23 13 12 43 43 H 1.08997 * 113.78445 * 89.91321 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8181 -0.1235 6 6 4.1986 3.3609 -1.3435 7 8 3.8776 2.7112 -2.3159 8 6 4.7351 4.7507 -1.5414 9 8 4.6492 5.4975 -0.3270 10 6 5.2207 4.8186 0.7992 11 6 4.3829 3.5729 1.0825 12 6 3.1726 3.8421 1.9877 13 7 3.5288 2.5759 2.6673 14 6 3.4211 2.7131 4.1258 15 6 1.9689 2.8189 4.5146 16 1 1.2027 2.7869 3.7542 17 6 1.6186 2.9553 5.8411 18 7 0.3512 3.0471 6.1803 19 14 2.9437 3.0084 7.1564 20 1 3.3634 4.4152 7.3799 21 1 2.4082 2.4447 8.4216 22 1 4.1132 2.2073 6.7136 23 6 4.9352 2.7088 2.2244 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6768 1.9563 -0.8900 31 1 3.9331 0.8516 -0.8418 32 1 3.9339 1.0095 0.9312 33 1 5.7774 4.6927 -1.8551 34 1 4.1547 5.2536 -2.3148 35 1 6.2462 4.5277 0.5714 36 1 5.2094 5.4755 1.6689 37 1 3.2825 4.7249 2.6174 38 1 2.2166 3.8066 1.4654 39 1 3.8632 1.8403 4.6065 40 1 3.9494 3.6110 4.4465 41 1 0.1047 3.1435 7.1135 42 1 5.3811 1.7719 1.8904 43 1 5.5666 3.2564 2.9241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:10 Heat of formation + Delta-G solvation = -37.595796 kcal Electronic energy + Delta-G solvation = -23905.865536 eV Core-core repulsion = 20566.568050 eV Total energy + Delta-G solvation = -3339.297486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.33167 -38.88788 -37.59115 -35.51821 -33.83651 -32.67402 -30.55720 -29.30124 -28.31926 -26.55075 -26.04666 -24.37487 -22.98724 -21.49964 -20.75668 -20.27582 -18.39216 -17.58139 -16.97015 -16.67637 -15.98230 -15.50449 -15.05358 -14.85534 -14.61941 -14.49954 -14.14791 -13.94546 -13.46695 -13.18071 -12.73510 -12.60597 -12.49861 -12.40012 -12.11038 -12.06981 -11.49670 -11.38070 -11.17622 -10.85287 -10.81940 -10.73533 -10.67293 -10.43992 -10.20610 -10.02744 -9.89589 -9.37494 -9.25426 -8.68399 -8.55192 -8.08055 -6.13463 -4.12386 2.49730 2.84870 3.20196 3.29171 3.29422 3.57408 4.21626 4.30699 4.34013 4.57766 4.67679 4.91882 5.12919 5.17823 5.22757 5.26353 5.32728 5.46088 5.47061 5.51411 5.61201 5.66099 5.81344 5.94000 5.97745 6.02563 6.10162 6.19212 6.22107 6.23938 6.39202 6.45407 6.52701 6.64280 6.67811 6.73247 6.87384 7.15857 7.48473 7.63761 7.68306 8.09226 8.49926 8.94567 9.47138 10.99570 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.006162 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.724881 B = 4542.694356 C = 5791.122261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.129 4.129 4 C 0.120 3.880 5 N -0.569 5.569 6 C 0.486 3.514 7 O -0.545 6.545 8 C 0.049 3.951 9 O -0.366 6.366 10 C 0.063 3.937 11 C 0.096 3.904 12 C 0.025 3.975 13 N -0.458 5.458 14 C 0.129 3.871 15 C -0.512 4.512 16 H 0.079 0.921 17 C 0.070 3.930 18 N -0.897 5.897 19 Si 0.875 3.125 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.267 1.267 23 C -0.008 4.008 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.032 0.968 40 H -0.008 1.008 41 H 0.264 0.736 42 H 0.088 0.912 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.521 1.055 -11.561 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.167 4.167 4 C -0.002 4.002 5 N -0.299 5.299 6 C 0.273 3.727 7 O -0.423 6.423 8 C -0.031 4.031 9 O -0.284 6.284 10 C -0.015 4.015 11 C 0.009 3.991 12 C -0.105 4.105 13 N -0.181 5.181 14 C 0.002 3.998 15 C -0.550 4.550 16 H 0.097 0.903 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.703 3.297 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.138 4.138 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.146 0.854 35 H 0.082 0.918 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.050 0.950 40 H 0.010 0.990 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.770 0.304 -12.013 15.488 hybrid contribution 1.088 0.518 1.317 1.784 sum 10.858 0.821 -10.697 15.264 Atomic orbital electron populations 1.21733 0.95971 1.01090 1.01925 1.21367 0.95912 0.96683 1.01401 1.21918 0.94821 0.97238 1.02765 1.21586 0.95002 0.80860 1.02739 1.47260 1.63593 1.14822 1.04262 1.21081 0.78782 0.89721 0.83099 1.90717 1.50316 1.62638 1.38668 1.22745 1.02450 0.88951 0.88945 1.88174 1.81190 1.42597 1.16439 1.23061 0.95433 0.92725 0.90278 1.22540 0.98206 0.92394 0.85974 1.24135 0.97795 0.94061 0.94522 1.68584 1.07798 1.30485 1.11187 1.20685 0.98906 0.95315 0.84870 1.20906 0.90348 1.50177 0.93586 0.90276 1.24910 0.95164 0.94725 0.98396 1.69895 1.15841 1.50038 1.17752 0.86866 0.82535 0.78543 0.81797 1.20330 1.21115 1.19213 1.24286 0.95096 0.99481 0.94983 0.93216 0.92124 0.93324 0.92890 0.91654 0.89790 0.92839 0.91283 0.88592 0.89734 0.85443 0.91834 0.86443 0.90194 0.89383 0.95033 0.99042 0.92584 0.89382 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.12 -1.66 5.93 -26.73 -0.16 -1.82 16 3 C -0.13 -2.05 5.30 -26.73 -0.14 -2.19 16 4 C 0.12 1.79 4.47 -4.04 -0.02 1.77 16 5 N -0.57 -8.25 2.66 -162.11 -0.43 -8.68 16 6 C 0.49 7.09 7.61 -11.41 -0.09 7.01 16 7 O -0.54 -9.53 16.55 5.56 0.09 -9.44 16 8 C 0.05 0.55 6.94 35.80 0.25 0.79 16 9 O -0.37 -4.49 10.84 -35.23 -0.38 -4.88 16 10 C 0.06 0.69 6.09 37.04 0.23 0.92 16 11 C 0.10 1.32 1.56 -135.15 -0.21 1.11 16 12 C 0.02 0.42 6.07 -2.93 -0.02 0.40 16 13 N -0.46 -8.43 4.65 -241.77 -1.12 -9.55 16 14 C 0.13 2.86 3.65 -4.98 -0.02 2.84 16 15 C -0.51 -13.79 9.39 -34.44 -0.32 -14.11 16 16 H 0.08 2.36 8.04 -52.49 -0.42 1.94 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -26.74 13.96 55.43 0.77 -25.96 16 19 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 23 C -0.01 -0.12 6.53 -2.95 -0.02 -0.14 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.54 6.04 -51.93 -0.31 1.22 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.04 7.49 -51.93 -0.39 0.65 16 32 H 0.10 1.45 5.44 -51.93 -0.28 1.17 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 36 H 0.12 1.17 7.86 -51.93 -0.41 0.76 16 37 H 0.08 1.38 7.54 -51.93 -0.39 0.98 16 38 H 0.09 1.65 6.90 -51.93 -0.36 1.29 16 39 H 0.03 0.72 7.20 -51.92 -0.37 0.35 16 40 H -0.01 -0.17 7.13 -51.93 -0.37 -0.54 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 42 H 0.09 1.17 6.99 -51.93 -0.36 0.80 16 43 H 0.08 0.98 7.74 -51.93 -0.40 0.58 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -31.02 335.74 -7.98 -38.99 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.04 Total: 1.83 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.25 Total: -3.29 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.78 Total: -44.19 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.29 Total: -14.32 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.02 -7.98 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.399 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds