Wall clock time and date at job start Tue Mar 31 2020 02:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47347 * 2 1 4 4 C 1.52999 * 109.47000 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47226 * 174.89894 * 4 3 2 6 6 C 1.34266 * 119.38140 * 274.10479 * 5 4 3 7 7 O 1.21278 * 118.97350 * 2.24203 * 6 5 4 8 8 C 1.50286 * 122.05949 * 181.96339 * 6 5 4 9 9 O 1.42817 * 110.49569 * 341.61256 * 8 6 5 10 10 C 1.43389 * 113.34402 * 51.29360 * 9 8 6 11 11 C 1.45920 * 119.37838 * 94.07694 * 5 4 3 12 12 C 1.53510 * 113.74983 * 295.64298 * 11 5 4 13 13 N 1.48046 * 86.04374 * 91.14682 * 12 11 5 14 14 C 1.46896 * 110.99462 * 137.29320 * 13 12 11 15 15 C 1.50700 * 109.47454 * 70.56189 * 14 13 12 16 16 H 1.07998 * 119.99657 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99998 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99550 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00259 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47238 * 90.00260 * 19 17 15 21 21 H 1.48501 * 109.47035 * 210.00026 * 19 17 15 22 22 H 1.48504 * 109.47116 * 329.99938 * 19 17 15 23 23 C 1.48045 * 90.83026 * 24.37402 * 13 12 11 24 24 H 1.08993 * 109.47341 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46805 * 299.99668 * 1 2 3 26 26 H 1.09000 * 109.46777 * 59.99749 * 1 2 3 27 27 H 1.09004 * 109.46805 * 240.00332 * 2 1 3 28 28 H 1.08997 * 109.47370 * 120.00695 * 2 1 3 29 29 H 1.09004 * 109.46897 * 60.00389 * 3 2 1 30 30 H 1.09000 * 109.47387 * 299.99877 * 3 2 1 31 31 H 1.09007 * 109.47237 * 54.90637 * 4 3 2 32 32 H 1.08996 * 109.47727 * 294.90494 * 4 3 2 33 33 H 1.09001 * 109.26964 * 101.87443 * 8 6 5 34 34 H 1.08992 * 109.27236 * 221.34927 * 8 6 5 35 35 H 1.09004 * 109.70573 * 54.05490 * 10 9 8 36 36 H 1.08998 * 109.70637 * 174.63735 * 10 9 8 37 37 H 1.08997 * 113.78046 * 205.42605 * 12 11 5 38 38 H 1.08997 * 113.78014 * 336.86838 * 12 11 5 39 39 H 1.09010 * 109.46839 * 190.56054 * 14 13 12 40 40 H 1.09002 * 109.47772 * 310.55650 * 14 13 12 41 41 H 0.97007 * 119.99815 * 180.02562 * 18 17 15 42 42 H 1.09004 * 113.77301 * 221.34196 * 23 13 12 43 43 H 1.08997 * 113.78445 * 89.91321 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8181 -0.1235 6 6 4.1986 3.3609 -1.3435 7 8 3.8776 2.7112 -2.3159 8 6 4.7351 4.7507 -1.5414 9 8 4.6492 5.4975 -0.3270 10 6 5.2207 4.8186 0.7992 11 6 4.3829 3.5729 1.0825 12 6 3.1726 3.8421 1.9877 13 7 3.5288 2.5759 2.6673 14 6 3.4211 2.7131 4.1258 15 6 1.9689 2.8189 4.5146 16 1 1.2027 2.7869 3.7542 17 6 1.6186 2.9553 5.8411 18 7 0.3512 3.0471 6.1803 19 14 2.9437 3.0084 7.1564 20 1 3.3634 4.4152 7.3799 21 1 2.4082 2.4447 8.4216 22 1 4.1132 2.2073 6.7136 23 6 4.9352 2.7088 2.2244 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6768 1.9563 -0.8900 31 1 3.9331 0.8516 -0.8418 32 1 3.9339 1.0095 0.9312 33 1 5.7774 4.6927 -1.8551 34 1 4.1547 5.2536 -2.3148 35 1 6.2462 4.5277 0.5714 36 1 5.2094 5.4755 1.6689 37 1 3.2825 4.7249 2.6174 38 1 2.2166 3.8066 1.4654 39 1 3.8632 1.8403 4.6065 40 1 3.9494 3.6110 4.4465 41 1 0.1047 3.1435 7.1135 42 1 5.3811 1.7719 1.8904 43 1 5.5666 3.2564 2.9241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:10 Heat of formation + Delta-G solvation = -60.198559 kcal Electronic energy + Delta-G solvation = -23906.845665 eV Core-core repulsion = 20566.568050 eV Total energy + Delta-G solvation = -3340.277615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.49981 -40.14695 -38.59216 -36.81355 -35.27917 -34.50338 -31.99592 -30.44094 -29.71749 -27.73857 -27.30901 -25.87993 -24.15318 -22.97233 -22.03718 -21.69921 -19.44790 -19.00109 -18.64932 -17.81363 -17.14459 -16.66425 -16.50304 -16.08849 -16.00307 -15.82775 -15.42468 -15.20659 -14.64473 -14.61744 -14.47075 -13.99073 -13.82126 -13.68801 -13.34707 -13.33390 -12.85347 -12.82757 -12.46236 -12.41213 -12.07681 -11.94825 -11.93444 -11.79356 -11.70540 -11.47391 -11.37077 -11.31691 -10.79291 -10.37917 -9.78476 -9.50056 -8.27496 -6.31937 1.35613 1.36946 1.38750 1.48732 1.75692 2.35243 2.65916 3.04375 3.08598 3.22912 3.45508 3.60591 3.97387 4.01655 4.10529 4.18495 4.26216 4.35260 4.41210 4.47558 4.51547 4.54230 4.63760 4.68038 4.71616 4.75835 4.80093 4.83749 4.89606 4.96828 5.01410 5.03737 5.22159 5.33158 5.41982 5.46212 5.51660 5.73599 5.82236 5.99838 6.37475 6.53228 6.75284 6.95357 7.32074 8.89512 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.006162 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.724881 B = 4542.694356 C = 5791.122261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.120 4.120 4 C 0.124 3.876 5 N -0.572 5.572 6 C 0.480 3.520 7 O -0.579 6.579 8 C 0.054 3.946 9 O -0.377 6.377 10 C 0.064 3.936 11 C 0.111 3.889 12 C 0.018 3.982 13 N -0.481 5.481 14 C 0.140 3.860 15 C -0.515 4.515 16 H 0.028 0.972 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.951 3.049 20 H -0.264 1.264 21 H -0.288 1.288 22 H -0.243 1.243 23 C 0.001 3.999 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.031 0.969 40 H 0.007 0.993 41 H 0.265 0.735 42 H 0.102 0.898 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.203 1.471 -11.775 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.158 4.158 4 C 0.002 3.998 5 N -0.302 5.302 6 C 0.270 3.730 7 O -0.459 6.459 8 C -0.026 4.026 9 O -0.295 6.295 10 C -0.013 4.013 11 C 0.024 3.976 12 C -0.112 4.112 13 N -0.203 5.203 14 C 0.012 3.988 15 C -0.553 4.553 16 H 0.046 0.954 17 C -0.192 4.192 18 N -0.592 5.592 19 Si 0.774 3.226 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.167 1.167 23 C -0.129 4.129 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.157 0.843 35 H 0.116 0.884 36 H 0.150 0.850 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.025 0.975 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.478 0.730 -12.247 18.226 hybrid contribution -0.186 0.368 1.284 1.349 sum 13.291 1.098 -10.963 17.264 Atomic orbital electron populations 1.21718 0.95878 1.02016 1.00934 1.21357 0.96032 0.95684 1.01986 1.21783 0.95965 0.97745 1.00329 1.21479 0.93865 0.81708 1.02721 1.47369 1.63373 1.14624 1.04875 1.21823 0.77961 0.90872 0.82367 1.90700 1.51793 1.63830 1.39622 1.22870 1.04379 0.86411 0.88894 1.88180 1.81627 1.42721 1.16979 1.23219 0.96161 0.91255 0.90640 1.22454 0.96359 0.93566 0.85261 1.24088 0.98155 0.93468 0.95458 1.68496 1.11511 1.31499 1.08790 1.20456 0.95269 0.95643 0.87428 1.21169 0.92263 1.49238 0.92628 0.95365 1.25920 0.97664 0.94348 1.01248 1.70080 1.18652 1.52112 1.18358 0.85666 0.79708 0.79440 0.77799 1.18929 1.21447 1.16672 1.24379 0.92850 1.00685 0.94950 0.91315 0.94595 0.92813 0.91117 0.92035 0.92994 0.94295 0.90989 0.88603 0.86295 0.84336 0.88398 0.84990 0.90339 0.92571 0.95050 0.97531 0.92593 0.87980 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 9.91 71.98 0.71 -3.58 16 2 C -0.11 -3.30 5.93 30.59 0.18 -3.12 16 3 C -0.12 -3.97 5.30 30.59 0.16 -3.81 16 4 C 0.12 3.68 4.47 86.38 0.39 4.06 16 5 N -0.57 -15.92 2.66 -785.49 -2.09 -18.01 16 6 C 0.48 13.25 7.61 87.61 0.67 13.92 16 7 O -0.58 -19.75 16.55 -3.02 -0.05 -19.80 16 8 C 0.05 1.03 6.94 71.11 0.49 1.53 16 9 O -0.38 -8.06 10.84 -148.98 -1.61 -9.67 16 10 C 0.06 1.18 6.09 71.91 0.44 1.61 16 11 C 0.11 2.82 1.56 5.16 0.01 2.82 16 12 C 0.02 0.64 6.07 86.25 0.52 1.16 16 13 N -0.48 -17.48 4.65 -918.83 -4.27 -21.75 16 14 C 0.14 6.06 3.65 85.56 0.31 6.37 16 15 C -0.51 -28.66 9.39 25.60 0.24 -28.42 16 16 H 0.03 1.80 8.04 -2.91 -0.02 1.78 16 17 C 0.01 0.30 5.47 84.65 0.46 0.76 16 18 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 19 Si 0.95 42.06 27.47 68.60 1.88 43.94 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 23 C 0.00 0.02 6.53 86.24 0.56 0.58 16 24 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 2.06 6.04 -2.38 -0.01 2.04 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 2.10 7.49 -2.38 -0.02 2.09 16 32 H 0.10 2.83 5.44 -2.39 -0.01 2.82 16 33 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.10 1.21 8.13 -2.38 -0.02 1.19 16 36 H 0.13 2.07 7.86 -2.39 -0.02 2.05 16 37 H 0.08 2.69 7.54 -2.39 -0.02 2.67 16 38 H 0.06 2.25 6.90 -2.39 -0.02 2.24 16 39 H 0.03 1.37 7.20 -2.38 -0.02 1.35 16 40 H 0.01 0.28 7.13 -2.39 -0.02 0.27 16 41 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 42 H 0.10 2.34 6.99 -2.38 -0.02 2.33 16 43 H 0.10 2.14 7.74 -2.39 -0.02 2.12 16 Total: -1.00 -71.18 335.74 0.24 -70.94 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.93 Total: 19.13 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.15 Total: -6.12 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -6.06 Total: -98.43 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.66 Total: -29.47 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.88 Total: 43.94 kcal Total: -71.18 0.24 -70.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.746 kcal (2) G-P(sol) polarization free energy of solvation -71.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds