Wall clock time and date at job start Tue Mar 31 2020 02:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47388 * 2 1 4 4 C 1.52998 * 109.47073 * 119.99836 * 2 1 3 5 5 N 1.46497 * 109.47106 * 65.50220 * 4 2 1 6 6 C 1.46268 * 118.71848 * 84.09582 * 5 4 2 7 7 C 1.52558 * 109.56999 * 163.92326 * 6 5 4 8 8 C 1.53382 * 113.83760 * 176.52513 * 7 6 5 9 9 N 1.48071 * 86.02399 * 91.25456 * 8 7 6 10 10 C 1.46900 * 110.99913 * 137.23117 * 9 8 7 11 11 C 1.50698 * 109.47057 * 70.54522 * 10 9 8 12 12 H 1.08003 * 120.00393 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99852 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99983 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99806 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47253 * 89.99812 * 15 13 11 17 17 H 1.48501 * 109.46920 * 209.99699 * 15 13 11 18 18 H 1.48495 * 109.47402 * 329.99677 * 15 13 11 19 19 C 1.48060 * 90.84377 * 24.30407 * 9 8 7 20 20 O 1.42685 * 112.47422 * 45.21258 * 7 6 5 21 21 C 1.43051 * 112.94932 * 295.89926 * 20 7 6 22 22 C 1.33724 * 118.71576 * 264.09336 * 5 4 2 23 23 O 1.21280 * 118.37837 * 3.26044 * 22 5 4 24 24 H 1.09006 * 109.47075 * 300.00150 * 1 2 3 25 25 H 1.09004 * 109.47076 * 59.99659 * 1 2 3 26 26 H 1.08995 * 109.47151 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47397 * 239.99626 * 2 1 3 28 28 H 1.09003 * 109.46729 * 64.97638 * 3 2 1 29 29 H 1.08991 * 109.47013 * 184.98044 * 3 2 1 30 30 H 1.09000 * 109.46489 * 304.98251 * 3 2 1 31 31 H 1.08998 * 109.47237 * 305.49902 * 4 2 1 32 32 H 1.09007 * 109.47218 * 185.49826 * 4 2 1 33 33 H 1.08996 * 109.46055 * 43.88860 * 6 5 4 34 34 H 1.09004 * 109.45680 * 283.94864 * 6 5 4 35 35 H 1.08998 * 113.78493 * 205.52844 * 8 7 6 36 36 H 1.08996 * 113.78624 * 336.97847 * 8 7 6 37 37 H 1.08996 * 109.46991 * 190.54891 * 10 9 8 38 38 H 1.09003 * 109.47187 * 310.54851 * 10 9 8 39 39 H 0.96996 * 119.99855 * 180.02562 * 14 13 11 40 40 H 1.08998 * 113.78350 * 221.42032 * 19 9 8 41 41 H 1.08996 * 113.78616 * 89.97279 * 19 9 8 42 42 H 1.09001 * 109.34645 * 167.53136 * 21 20 7 43 43 H 1.09004 * 109.34877 * 287.08623 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6628 -2.1353 1.1849 6 6 2.5178 -3.0575 0.4380 7 6 2.1798 -4.4942 0.8241 8 6 2.9638 -5.5493 0.0338 9 7 3.9607 -5.4776 1.1263 10 6 4.4276 -6.8189 1.5018 11 6 5.2881 -7.3784 0.3984 12 1 5.4704 -6.7957 -0.4925 13 6 5.8428 -8.6342 0.5262 14 7 5.6213 -9.3435 1.6113 15 14 6.9101 -9.3274 -0.8412 16 1 8.3264 -8.9494 -0.6037 17 1 6.7895 -10.8074 -0.8612 18 1 6.4629 -8.7767 -2.1457 19 6 2.9262 -4.9929 2.0681 20 8 0.7734 -4.7318 0.8637 21 6 0.1064 -3.9660 1.8711 22 6 0.5502 -2.5326 1.8114 23 8 -0.1345 -1.6939 2.3579 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.7513 1.9300 0.9312 29 1 3.1263 1.4438 -0.0892 30 1 1.6056 1.9814 -0.8420 31 1 1.5985 -0.2674 2.1365 32 1 3.1256 -0.6367 1.2999 33 1 3.5627 -2.8548 0.6728 34 1 2.3530 -2.9206 -0.6308 35 1 2.4573 -6.5119 -0.0366 36 1 3.3370 -5.1922 -0.9260 37 1 5.0101 -6.7567 2.4209 38 1 3.5690 -7.4716 1.6593 39 1 6.0118 -10.2268 1.7014 40 1 3.2694 -4.1936 2.7248 41 1 2.4085 -5.7905 2.6010 42 1 -0.9704 -4.0177 1.7102 43 1 0.3429 -4.3767 2.8527 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:39 Heat of formation + Delta-G solvation = -43.032300 kcal Electronic energy + Delta-G solvation = -23299.265427 eV Core-core repulsion = 19959.732197 eV Total energy + Delta-G solvation = -3339.533230 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20749 -39.30922 -36.79305 -36.44055 -34.14677 -32.91589 -30.08250 -28.41663 -27.36440 -27.27112 -25.73021 -25.42491 -24.43349 -21.79227 -20.58827 -19.87058 -18.15968 -17.69338 -16.75693 -16.49908 -16.10394 -15.64072 -15.15348 -15.01623 -14.57527 -14.48762 -14.11248 -13.76668 -13.35914 -13.22032 -13.02187 -12.83382 -12.39412 -12.23236 -12.08439 -11.99367 -11.95617 -11.60115 -11.30806 -11.08931 -11.06206 -10.91019 -10.82604 -10.64812 -10.41525 -10.14611 -9.81856 -9.34041 -9.21218 -8.77046 -8.56748 -7.97989 -6.11718 -4.14430 2.47073 2.76519 3.27416 3.33730 3.36734 3.62914 4.22578 4.35606 4.48284 4.64869 4.68473 4.75312 4.76933 4.91587 5.14559 5.24075 5.25879 5.35158 5.39532 5.45562 5.51553 5.57413 5.66746 5.69337 5.73806 5.77937 5.88336 5.92766 6.00459 6.06734 6.17360 6.25548 6.28555 6.39045 6.48568 6.95354 7.09682 7.32969 7.51998 7.76039 7.98405 8.00347 8.29604 8.92394 9.50656 10.99451 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028538 B = 0.003849 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.902477 B = 7273.241721 C = 7813.942526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C -0.144 4.144 4 C 0.112 3.888 5 N -0.599 5.599 6 C 0.118 3.882 7 C 0.057 3.943 8 C 0.048 3.952 9 N -0.470 5.470 10 C 0.163 3.837 11 C -0.514 4.514 12 H 0.063 0.937 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.020 4.020 20 O -0.357 6.357 21 C 0.050 3.950 22 C 0.491 3.509 23 O -0.548 6.548 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.034 0.966 38 H 0.002 0.998 39 H 0.263 0.737 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.125 0.875 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.688 16.000 -2.126 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 C -0.202 4.202 4 C -0.010 4.010 5 N -0.331 5.331 6 C -0.005 4.005 7 C 0.017 3.983 8 C -0.081 4.081 9 N -0.195 5.195 10 C 0.037 3.963 11 C -0.552 4.552 12 H 0.081 0.919 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.149 4.149 20 O -0.275 6.275 21 C -0.030 4.030 22 C 0.279 3.721 23 O -0.427 6.427 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.052 0.948 38 H 0.020 0.980 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.143 0.857 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.478 16.454 -1.962 18.614 hybrid contribution 0.132 -1.034 -0.329 1.093 sum -8.346 15.421 -2.291 17.683 Atomic orbital electron populations 1.21759 0.94562 1.01864 1.01242 1.21475 0.96871 0.96270 0.98469 1.21767 1.00918 0.95475 1.02016 1.21674 0.99933 0.80236 0.99186 1.47510 1.24588 1.09276 1.51718 1.21776 0.95732 0.86632 0.96355 1.23719 0.80317 0.94738 0.99562 1.23735 0.90687 0.96493 0.97168 1.68635 1.21155 1.27339 1.02335 1.20222 0.95583 0.82797 0.97733 1.21060 1.30257 1.00524 1.03366 0.91857 1.24992 0.96598 0.96876 0.95983 1.69949 1.44789 1.11882 1.26921 0.86474 0.80700 0.77999 0.82114 1.20576 1.21245 1.19765 1.24419 0.94491 1.00435 0.95604 1.88170 1.19719 1.64363 1.55227 1.22673 0.99431 0.86406 0.94471 1.20895 0.80724 0.92241 0.78283 1.90704 1.52733 1.52927 1.46295 0.92298 0.93425 0.92986 0.91103 0.92517 0.92526 0.92460 0.89305 0.90454 0.88174 0.90592 0.89792 0.89152 0.94761 0.98010 0.92777 0.90124 0.90790 0.85700 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.04 37.16 0.30 -1.20 16 2 C -0.11 -1.09 3.11 -90.62 -0.28 -1.37 16 3 C -0.14 -1.14 9.19 37.16 0.34 -0.80 16 4 C 0.11 1.21 4.89 -4.04 -0.02 1.19 16 5 N -0.60 -7.47 2.65 -174.68 -0.46 -7.94 16 6 C 0.12 1.48 5.79 -4.39 -0.03 1.46 16 7 C 0.06 0.85 1.21 -90.51 -0.11 0.74 16 8 C 0.05 0.85 6.87 -2.99 -0.02 0.83 16 9 N -0.47 -9.38 6.14 -242.39 -1.49 -10.87 16 10 C 0.16 4.05 4.58 -4.98 -0.02 4.02 16 11 C -0.51 -13.89 8.84 -34.44 -0.30 -14.19 16 12 H 0.06 1.68 7.80 -52.48 -0.41 1.27 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.01 13.29 55.43 0.74 -25.28 16 15 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C -0.02 -0.33 6.67 -2.98 -0.02 -0.35 16 20 O -0.36 -5.29 10.66 -35.23 -0.38 -5.67 16 21 C 0.05 0.63 6.67 35.75 0.24 0.87 16 22 C 0.49 6.79 6.36 -11.71 -0.07 6.71 16 23 O -0.55 -8.68 14.82 5.56 0.08 -8.60 16 24 H 0.06 0.69 8.06 -51.93 -0.42 0.27 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.67 6.45 -51.93 -0.33 0.33 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 1.06 7.11 -51.93 -0.37 0.69 16 32 H 0.08 0.72 8.03 -51.93 -0.42 0.31 16 33 H 0.10 1.25 7.91 -51.93 -0.41 0.84 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.61 7.78 -51.93 -0.40 1.20 16 36 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 37 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.00 0.05 7.70 -51.93 -0.40 -0.35 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 41 H 0.07 1.29 7.79 -51.93 -0.40 0.88 16 42 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.09 1.04 7.92 -51.93 -0.41 0.63 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -30.10 342.27 -8.81 -38.90 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.34 Total: -1.14 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.10 Total: -0.60 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -1.22 Total: -44.08 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.29 Total: -14.27 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.10 -8.81 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.130 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds