Wall clock time and date at job start Tue Mar 31 2020 02:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47388 * 2 1 4 4 C 1.52998 * 109.47073 * 119.99836 * 2 1 3 5 5 N 1.46497 * 109.47106 * 65.50220 * 4 2 1 6 6 C 1.46268 * 118.71848 * 84.09582 * 5 4 2 7 7 C 1.52558 * 109.56999 * 163.92326 * 6 5 4 8 8 C 1.53382 * 113.83760 * 176.52513 * 7 6 5 9 9 N 1.48071 * 86.02399 * 91.25456 * 8 7 6 10 10 C 1.46900 * 110.99913 * 137.23117 * 9 8 7 11 11 C 1.50698 * 109.47057 * 70.54522 * 10 9 8 12 12 H 1.08003 * 120.00393 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99852 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99983 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99806 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47253 * 89.99812 * 15 13 11 17 17 H 1.48501 * 109.46920 * 209.99699 * 15 13 11 18 18 H 1.48495 * 109.47402 * 329.99677 * 15 13 11 19 19 C 1.48060 * 90.84377 * 24.30407 * 9 8 7 20 20 O 1.42685 * 112.47422 * 45.21258 * 7 6 5 21 21 C 1.43051 * 112.94932 * 295.89926 * 20 7 6 22 22 C 1.33724 * 118.71576 * 264.09336 * 5 4 2 23 23 O 1.21280 * 118.37837 * 3.26044 * 22 5 4 24 24 H 1.09006 * 109.47075 * 300.00150 * 1 2 3 25 25 H 1.09004 * 109.47076 * 59.99659 * 1 2 3 26 26 H 1.08995 * 109.47151 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47397 * 239.99626 * 2 1 3 28 28 H 1.09003 * 109.46729 * 64.97638 * 3 2 1 29 29 H 1.08991 * 109.47013 * 184.98044 * 3 2 1 30 30 H 1.09000 * 109.46489 * 304.98251 * 3 2 1 31 31 H 1.08998 * 109.47237 * 305.49902 * 4 2 1 32 32 H 1.09007 * 109.47218 * 185.49826 * 4 2 1 33 33 H 1.08996 * 109.46055 * 43.88860 * 6 5 4 34 34 H 1.09004 * 109.45680 * 283.94864 * 6 5 4 35 35 H 1.08998 * 113.78493 * 205.52844 * 8 7 6 36 36 H 1.08996 * 113.78624 * 336.97847 * 8 7 6 37 37 H 1.08996 * 109.46991 * 190.54891 * 10 9 8 38 38 H 1.09003 * 109.47187 * 310.54851 * 10 9 8 39 39 H 0.96996 * 119.99855 * 180.02562 * 14 13 11 40 40 H 1.08998 * 113.78350 * 221.42032 * 19 9 8 41 41 H 1.08996 * 113.78616 * 89.97279 * 19 9 8 42 42 H 1.09001 * 109.34645 * 167.53136 * 21 20 7 43 43 H 1.09004 * 109.34877 * 287.08623 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6628 -2.1353 1.1849 6 6 2.5178 -3.0575 0.4380 7 6 2.1798 -4.4942 0.8241 8 6 2.9638 -5.5493 0.0338 9 7 3.9607 -5.4776 1.1263 10 6 4.4276 -6.8189 1.5018 11 6 5.2881 -7.3784 0.3984 12 1 5.4704 -6.7957 -0.4925 13 6 5.8428 -8.6342 0.5262 14 7 5.6213 -9.3435 1.6113 15 14 6.9101 -9.3274 -0.8412 16 1 8.3264 -8.9494 -0.6037 17 1 6.7895 -10.8074 -0.8612 18 1 6.4629 -8.7767 -2.1457 19 6 2.9262 -4.9929 2.0681 20 8 0.7734 -4.7318 0.8637 21 6 0.1064 -3.9660 1.8711 22 6 0.5502 -2.5326 1.8114 23 8 -0.1345 -1.6939 2.3579 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.7513 1.9300 0.9312 29 1 3.1263 1.4438 -0.0892 30 1 1.6056 1.9814 -0.8420 31 1 1.5985 -0.2674 2.1365 32 1 3.1256 -0.6367 1.2999 33 1 3.5627 -2.8548 0.6728 34 1 2.3530 -2.9206 -0.6308 35 1 2.4573 -6.5119 -0.0366 36 1 3.3370 -5.1922 -0.9260 37 1 5.0101 -6.7567 2.4209 38 1 3.5690 -7.4716 1.6593 39 1 6.0118 -10.2268 1.7014 40 1 3.2694 -4.1936 2.7248 41 1 2.4085 -5.7905 2.6010 42 1 -0.9704 -4.0177 1.7102 43 1 0.3429 -4.3767 2.8527 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:38 Heat of formation + Delta-G solvation = -64.247417 kcal Electronic energy + Delta-G solvation = -23300.185383 eV Core-core repulsion = 19959.732197 eV Total energy + Delta-G solvation = -3340.453187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.39237 -40.57041 -37.93450 -37.54319 -35.18208 -34.85497 -31.65551 -29.51577 -28.80591 -28.05225 -27.14025 -26.39630 -26.09085 -23.38919 -21.70860 -20.93657 -19.32879 -18.94201 -18.42562 -17.87931 -17.20087 -16.94807 -16.42720 -16.28379 -16.09154 -15.54743 -15.23715 -15.01061 -14.73669 -14.38938 -14.26137 -13.92213 -13.82852 -13.66478 -13.32749 -13.09033 -13.00833 -12.78490 -12.75729 -12.55908 -12.31763 -12.18331 -12.08450 -11.85482 -11.70816 -11.58272 -11.26017 -11.16964 -10.64432 -10.44113 -9.78951 -9.66597 -8.22472 -6.33007 1.40254 1.43524 1.44274 1.55408 1.75471 2.39715 2.43700 3.06328 3.11986 3.24421 3.32088 3.59879 3.87323 3.98362 4.05156 4.13175 4.16971 4.35871 4.43012 4.51406 4.52248 4.58981 4.62737 4.69644 4.73003 4.79716 4.80760 4.86872 4.93826 4.98029 5.05267 5.09020 5.20695 5.28928 5.41387 5.48456 5.50087 5.75156 5.80878 6.06086 6.27200 6.31888 6.82031 6.94900 7.37291 8.89339 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028538 B = 0.003849 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.902477 B = 7273.241721 C = 7813.942526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.110 3.890 5 N -0.596 5.596 6 C 0.124 3.876 7 C 0.077 3.923 8 C 0.044 3.956 9 N -0.475 5.475 10 C 0.178 3.822 11 C -0.527 4.527 12 H 0.068 0.932 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.260 1.260 19 C -0.020 4.020 20 O -0.367 6.367 21 C 0.048 3.952 22 C 0.487 3.513 23 O -0.571 6.571 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.004 0.996 38 H -0.025 1.025 39 H 0.265 0.735 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.144 0.856 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.227 17.405 -3.730 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 C -0.197 4.197 4 C -0.012 4.012 5 N -0.327 5.327 6 C 0.002 3.998 7 C 0.036 3.964 8 C -0.085 4.085 9 N -0.199 5.199 10 C 0.051 3.949 11 C -0.565 4.565 12 H 0.086 0.914 13 C -0.196 4.196 14 N -0.575 5.575 15 Si 0.794 3.206 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.184 1.184 19 C -0.150 4.150 20 O -0.285 6.285 21 C -0.031 4.031 22 C 0.276 3.724 23 O -0.452 6.452 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.022 0.978 38 H -0.007 1.007 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.161 0.839 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.015 17.885 -3.578 19.923 hybrid contribution -0.079 -1.439 0.216 1.457 sum -8.094 16.446 -3.362 18.636 Atomic orbital electron populations 1.21709 0.95645 1.00435 1.01206 1.21455 0.95826 0.97436 0.97943 1.21734 1.01633 0.94073 1.02306 1.21822 1.01024 0.79108 0.99262 1.47552 1.24009 1.10040 1.51121 1.21746 0.95967 0.84801 0.97295 1.23403 0.80398 0.95449 0.97118 1.23728 0.90523 0.96705 0.97556 1.68521 1.23172 1.23978 1.04250 1.19864 0.94041 0.84932 0.96101 1.21413 1.30331 1.00867 1.03862 0.91426 1.25923 0.97955 0.97315 0.98397 1.70081 1.46050 1.12321 1.29026 0.85375 0.78784 0.77115 0.79329 1.19942 1.21043 1.18448 1.24457 0.93838 1.00388 0.96268 1.88150 1.19353 1.65053 1.55944 1.22843 1.00238 0.85699 0.94318 1.21025 0.80893 0.92334 0.78162 1.90699 1.53538 1.53508 1.47487 0.93553 0.92214 0.95044 0.90648 0.92624 0.91381 0.91756 0.90559 0.88546 0.87423 0.88787 0.91842 0.87351 0.97780 1.00696 0.92666 0.88687 0.91882 0.83893 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.04 71.98 0.58 -2.15 16 2 C -0.11 -1.84 3.11 -10.79 -0.03 -1.87 16 3 C -0.14 -1.85 9.19 71.98 0.66 -1.18 16 4 C 0.11 2.13 4.89 86.38 0.42 2.56 16 5 N -0.60 -13.70 2.65 -825.53 -2.19 -15.89 16 6 C 0.12 2.82 5.79 86.28 0.50 3.32 16 7 C 0.08 2.19 1.21 -10.65 -0.01 2.17 16 8 C 0.04 1.51 6.87 86.20 0.59 2.11 16 9 N -0.48 -18.90 6.14 -925.07 -5.68 -24.59 16 10 C 0.18 9.10 4.58 85.56 0.39 9.49 16 11 C -0.53 -28.67 8.84 25.60 0.23 -28.44 16 12 H 0.07 3.55 7.80 -2.91 -0.02 3.52 16 13 C 0.00 0.13 5.46 84.66 0.46 0.60 16 14 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 15 Si 0.97 42.92 29.54 68.60 2.03 44.94 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 19 C -0.02 -0.67 6.67 86.21 0.58 -0.09 16 20 O -0.37 -10.43 10.66 -148.98 -1.59 -12.02 16 21 C 0.05 1.16 6.67 71.07 0.47 1.63 16 22 C 0.49 12.86 6.36 87.65 0.56 13.42 16 23 O -0.57 -17.69 14.82 -3.03 -0.04 -17.74 16 24 H 0.05 1.05 8.06 -2.38 -0.02 1.03 16 25 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.03 0.76 6.45 -2.39 -0.02 0.75 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 1.72 7.11 -2.39 -0.02 1.70 16 32 H 0.10 1.52 8.03 -2.38 -0.02 1.50 16 33 H 0.11 2.36 7.91 -2.39 -0.02 2.34 16 34 H 0.09 1.87 8.14 -2.38 -0.02 1.86 16 35 H 0.06 2.46 7.78 -2.39 -0.02 2.44 16 36 H 0.11 3.31 8.09 -2.39 -0.02 3.29 16 37 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 38 H -0.02 -1.37 7.70 -2.39 -0.02 -1.39 16 39 H 0.26 14.74 8.31 -92.71 -0.77 13.96 16 40 H 0.09 2.85 8.09 -2.39 -0.02 2.83 16 41 H 0.06 2.23 7.79 -2.39 -0.02 2.21 16 42 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.10 2.18 7.92 -2.38 -0.02 2.16 16 Total: -1.00 -65.09 342.27 -0.83 -65.92 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.97 Total: 12.80 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.39 Total: 1.55 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -7.58 Total: -95.45 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -1.63 Total: -29.76 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -65.09 -0.83 -65.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.673 kcal (2) G-P(sol) polarization free energy of solvation -65.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds