Wall clock time and date at job start Tue Mar 31 2020 02:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47182 * 2 1 4 4 C 1.52999 * 109.47420 * 120.00823 * 2 1 3 5 5 N 1.46499 * 109.47237 * 64.99550 * 4 2 1 6 6 C 1.34317 * 119.40512 * 269.98073 * 5 4 2 7 7 O 1.21273 * 118.99409 * 2.02417 * 6 5 4 8 8 C 1.50285 * 122.00655 * 182.02328 * 6 5 4 9 9 O 1.42815 * 110.54147 * 341.45494 * 8 6 5 10 10 C 1.43395 * 113.34686 * 51.36380 * 9 8 6 11 11 C 1.45811 * 119.40941 * 90.00360 * 5 4 2 12 12 C 1.52953 * 114.30036 * 31.69453 * 11 5 4 13 13 N 1.47582 * 87.81053 * 271.71194 * 12 11 5 14 14 C 1.46895 * 110.99802 * 221.69287 * 13 12 11 15 15 C 1.50702 * 109.46770 * 169.99955 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72214 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.47564 * 87.94380 * 333.43350 * 13 12 11 24 24 H 1.08998 * 109.47516 * 59.99272 * 1 2 3 25 25 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 26 26 H 1.09011 * 109.46723 * 299.99647 * 1 2 3 27 27 H 1.09007 * 109.46304 * 240.00617 * 2 1 3 28 28 H 1.09004 * 109.46648 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47532 * 300.00318 * 3 2 1 30 30 H 1.09000 * 109.47302 * 60.00876 * 3 2 1 31 31 H 1.09002 * 109.46817 * 304.99440 * 4 2 1 32 32 H 1.08994 * 109.47206 * 184.99472 * 4 2 1 33 33 H 1.08997 * 109.25719 * 221.17509 * 8 6 5 34 34 H 1.09007 * 109.25736 * 101.73182 * 8 6 5 35 35 H 1.09003 * 109.70199 * 174.87717 * 10 9 8 36 36 H 1.08998 * 109.70902 * 54.26046 * 10 9 8 37 37 H 1.09001 * 113.49787 * 156.97845 * 12 11 5 38 38 H 1.09003 * 113.49725 * 26.44868 * 12 11 5 39 39 H 1.09004 * 109.47258 * 50.00279 * 14 13 12 40 40 H 1.08994 * 109.47601 * 289.99871 * 14 13 12 41 41 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 42 42 H 1.09002 * 113.49538 * 141.29388 * 23 13 12 43 43 H 1.09000 * 113.49600 * 271.82289 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 1.6525 -2.1330 1.1903 6 6 0.4784 -2.5170 1.7177 7 8 -0.2525 -1.6774 2.1990 8 6 0.0429 -3.9553 1.7296 9 8 0.7876 -4.7123 0.7746 10 6 2.2064 -4.5449 0.8985 11 6 2.5484 -3.0959 0.5608 12 6 4.0336 -2.7579 0.6997 13 7 3.9112 -1.9658 -0.5395 14 6 5.0732 -2.1732 -1.4138 15 6 4.8055 -1.5524 -2.7607 16 1 3.8663 -1.0533 -2.9483 17 6 5.7622 -1.6161 -3.7516 18 7 5.5308 -1.0696 -4.9252 19 14 7.3870 -2.4788 -3.4270 20 1 7.2680 -3.9128 -3.7940 21 1 8.4548 -1.8461 -4.2423 22 1 7.7298 -2.3632 -1.9867 23 6 2.7926 -2.8461 -0.9286 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8932 -0.5138 -0.8901 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6055 -0.2619 2.1369 32 1 3.1263 -0.6446 1.2949 33 1 -1.0178 -4.0117 1.4851 34 1 0.2047 -4.3717 2.7239 35 1 2.7172 -5.2141 0.2062 36 1 2.5148 -4.7668 1.9201 37 1 4.6877 -3.6240 0.5989 38 1 4.2620 -2.1561 1.5794 39 1 5.2505 -3.2418 -1.5351 40 1 5.9517 -1.7075 -0.9673 41 1 6.2037 -1.1148 -5.6223 42 1 1.9754 -2.3186 -1.4206 43 1 3.1090 -3.7362 -1.4725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:12 Heat of formation + Delta-G solvation = -29.251468 kcal Electronic energy + Delta-G solvation = -24327.379159 eV Core-core repulsion = 20988.443511 eV Total energy + Delta-G solvation = -3338.935648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.47995 -39.01321 -37.68260 -35.73630 -33.66981 -32.60565 -30.48142 -28.57493 -27.81313 -26.75378 -25.85259 -25.04077 -24.13721 -21.51498 -20.38501 -19.94376 -18.25403 -17.64420 -16.95295 -16.68186 -16.02041 -15.49413 -15.19724 -14.76203 -14.52929 -14.43728 -14.09762 -13.81738 -13.27140 -13.13152 -12.74528 -12.45265 -12.42250 -12.39564 -12.17612 -11.78917 -11.49839 -11.42432 -11.33244 -11.02734 -10.80492 -10.60060 -10.51573 -10.37643 -10.25720 -9.93559 -9.88540 -9.37895 -9.24779 -8.68607 -8.47972 -8.16323 -6.13487 -4.12427 2.51731 2.86737 3.20028 3.28800 3.29223 3.57173 4.22492 4.32914 4.37948 4.55110 4.71781 4.93030 5.13407 5.17721 5.24527 5.33686 5.37780 5.44698 5.47831 5.55677 5.62732 5.82064 5.86787 5.95823 6.01137 6.09671 6.13634 6.20493 6.24984 6.38473 6.39358 6.50023 6.56938 6.62229 6.68688 6.79289 6.98239 7.13875 7.50420 7.62535 7.69130 8.12191 8.49832 8.94872 9.46954 10.99559 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.005984 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.169814 B = 4677.933848 C = 5532.248781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 C -0.137 4.137 4 C 0.126 3.874 5 N -0.565 5.565 6 C 0.486 3.514 7 O -0.540 6.540 8 C 0.048 3.952 9 O -0.366 6.366 10 C 0.066 3.934 11 C 0.095 3.905 12 C -0.012 4.012 13 N -0.448 5.448 14 C 0.129 3.871 15 C -0.512 4.512 16 H 0.079 0.921 17 C 0.070 3.930 18 N -0.896 5.896 19 Si 0.875 3.125 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.267 1.267 23 C 0.017 3.983 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.084 0.916 39 H -0.007 1.007 40 H 0.032 0.968 41 H 0.264 0.736 42 H 0.086 0.914 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 -5.819 13.831 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 C -0.195 4.195 4 C 0.004 3.996 5 N -0.296 5.296 6 C 0.274 3.726 7 O -0.418 6.418 8 C -0.032 4.032 9 O -0.284 6.284 10 C -0.011 4.011 11 C 0.008 3.992 12 C -0.142 4.142 13 N -0.170 5.170 14 C 0.001 3.999 15 C -0.550 4.550 16 H 0.097 0.903 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.702 3.298 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.113 4.113 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.145 0.855 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.011 0.989 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.787 -4.712 13.766 16.056 hybrid contribution 1.420 -1.130 -0.071 1.816 sum -5.367 -5.842 13.695 15.827 Atomic orbital electron populations 1.21817 0.95702 1.01155 1.00581 1.21500 0.95181 0.96463 0.99644 1.21671 1.01587 0.95462 1.00792 1.21628 1.01105 0.78591 0.98245 1.47152 1.17897 1.08726 1.55832 1.21018 0.81355 0.91998 0.78276 1.90724 1.51778 1.52669 1.46619 1.22754 0.98542 0.87170 0.94715 1.88174 1.17448 1.67140 1.55644 1.22959 0.81814 0.93922 1.02429 1.22030 0.91530 0.89106 0.96563 1.24144 0.93304 0.98381 0.98372 1.68995 1.06628 1.38960 1.02451 1.20711 0.90127 0.94832 0.94192 1.20898 1.04188 1.36166 0.93718 0.90256 1.24912 0.98126 0.95169 0.94981 1.69890 1.35063 1.44724 1.03823 0.86870 0.84259 0.79994 0.78646 1.20322 1.21109 1.19223 1.24043 0.96844 0.97363 0.93092 0.93839 0.93490 0.92974 0.88853 0.92048 0.92831 0.93731 0.91023 0.88996 0.85508 0.89780 0.86472 0.91783 0.90595 0.89749 0.98942 0.95000 0.92577 0.89575 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 7.87 37.16 0.29 -1.84 16 2 C -0.11 -1.74 2.89 -90.62 -0.26 -2.00 16 3 C -0.14 -2.06 9.19 37.16 0.34 -1.72 16 4 C 0.13 1.88 4.19 -4.04 -0.02 1.87 16 5 N -0.57 -8.07 2.58 -160.35 -0.41 -8.48 16 6 C 0.49 6.90 6.30 -11.39 -0.07 6.83 16 7 O -0.54 -9.01 14.41 5.56 0.08 -8.93 16 8 C 0.05 0.53 6.93 35.80 0.25 0.77 16 9 O -0.37 -4.43 10.84 -35.23 -0.38 -4.81 16 10 C 0.07 0.72 6.14 36.99 0.23 0.95 16 11 C 0.10 1.29 1.66 -132.98 -0.22 1.07 16 12 C -0.01 -0.17 6.30 -7.31 -0.05 -0.21 16 13 N -0.45 -8.22 4.43 -246.08 -1.09 -9.31 16 14 C 0.13 2.84 3.65 -4.98 -0.02 2.82 16 15 C -0.51 -13.78 9.50 -34.44 -0.33 -14.11 16 16 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -26.75 13.96 55.43 0.77 -25.98 16 19 Si 0.87 20.58 27.47 -169.99 -4.67 15.91 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 23 C 0.02 0.28 5.86 -7.30 -0.04 0.24 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.78 6.02 -51.93 -0.31 0.47 16 26 H 0.05 0.82 7.91 -51.92 -0.41 0.41 16 27 H 0.09 1.75 5.22 -51.92 -0.27 1.48 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.09 7.36 -51.93 -0.38 0.70 16 32 H 0.09 1.39 5.57 -51.93 -0.29 1.10 16 33 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.12 1.14 7.85 -51.93 -0.41 0.73 16 36 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 37 H 0.08 0.98 7.72 -51.93 -0.40 0.58 16 38 H 0.08 1.12 7.04 -51.93 -0.37 0.76 16 39 H -0.01 -0.15 7.00 -51.93 -0.36 -0.52 16 40 H 0.03 0.73 7.19 -51.93 -0.37 0.35 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.09 1.61 6.69 -51.93 -0.35 1.26 16 43 H 0.08 1.32 7.45 -51.93 -0.39 0.94 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -30.62 326.76 -7.63 -38.25 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.86 Total: 1.90 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 0.01 Total: -3.48 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.73 Total: -43.77 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.30 Total: -13.74 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.62 -7.63 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.002 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds