Wall clock time and date at job start Tue Mar 31 2020 02:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 H 1.09008 * 115.56055 * 29.29399 * 3 2 1 5 5 C 1.53000 * 117.49997 * 243.60886 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.49592 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 N 1.46501 * 117.49747 * 252.51859 * 6 5 3 9 9 C 1.34778 * 120.00167 * 223.61209 * 8 6 5 10 10 O 1.21340 * 120.00036 * 359.97438 * 9 8 6 11 11 C 1.49452 * 119.99865 * 180.02562 * 9 8 6 12 12 O 1.21352 * 120.00347 * 359.97438 * 11 9 8 13 13 N 1.34778 * 119.99865 * 180.02562 * 11 9 8 14 14 C 1.46501 * 120.00167 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.47161 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47071 * 299.99967 * 15 14 13 17 17 C 1.52995 * 109.46940 * 60.00368 * 15 14 13 18 18 C 1.50706 * 109.47061 * 179.97438 * 15 14 13 19 19 H 1.08000 * 119.99890 * 359.97438 * 18 15 14 20 20 C 1.37874 * 119.99842 * 179.97438 * 18 15 14 21 21 N 1.31508 * 120.00327 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99697 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47205 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47313 * 120.00379 * 22 20 18 25 25 H 1.48508 * 109.46920 * 240.00214 * 22 20 18 26 26 H 1.09000 * 109.46540 * 60.00014 * 1 2 3 27 27 H 1.08994 * 109.46916 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47122 * 300.00432 * 1 2 3 29 29 H 1.08999 * 109.47637 * 239.99610 * 2 1 3 30 30 H 1.09004 * 109.47028 * 119.99895 * 2 1 3 31 31 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 32 32 H 1.09002 * 117.49953 * 144.99738 * 5 3 2 33 33 H 0.97008 * 120.00262 * 43.60731 * 8 6 5 34 34 H 0.96995 * 119.99883 * 359.97438 * 13 11 9 35 35 H 1.08995 * 109.46981 * 299.99870 * 14 13 11 36 36 H 1.08998 * 109.47009 * 59.99786 * 14 13 11 37 37 H 1.08999 * 109.47180 * 60.00023 * 16 15 14 38 38 H 1.09004 * 109.47220 * 180.02562 * 16 15 14 39 39 H 1.08998 * 109.47248 * 300.00070 * 16 15 14 40 40 H 1.08996 * 109.47776 * 60.00184 * 17 15 14 41 41 H 1.09004 * 109.47144 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.47521 * 299.99388 * 17 15 14 43 43 H 0.96999 * 120.00769 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3883 2.1718 0.4812 5 6 2.8443 1.9074 -1.2157 6 6 3.5508 1.6583 0.1184 7 1 4.1815 0.7727 0.1963 8 7 4.0099 2.8293 0.8696 9 6 5.2315 2.8281 1.4390 10 8 5.9509 1.8571 1.3299 11 6 5.6996 4.0225 2.2059 12 8 4.9800 4.9935 2.3155 13 7 6.9214 4.0216 2.7749 14 6 7.3805 5.1925 3.5261 15 6 8.7890 4.9331 4.0643 16 6 8.7658 3.7124 4.9864 17 6 9.7412 4.6715 2.8957 18 6 9.2615 6.1379 4.8365 19 1 8.6214 7.0023 4.9334 20 6 10.5110 6.1365 5.4194 21 7 11.2907 5.0841 5.3010 22 14 11.0964 7.6296 6.3772 23 1 10.0400 8.6731 6.3616 24 1 11.3837 7.2364 7.7801 25 1 12.3312 8.1666 5.7508 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8935 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.0104 1.1855 -2.0153 32 1 2.7214 2.9425 -1.5345 33 1 3.4347 3.6055 0.9572 34 1 7.4967 3.2456 2.6870 35 1 7.3966 6.0621 2.8693 36 1 6.7023 5.3787 4.3589 37 1 8.4242 2.8412 4.4275 38 1 9.7692 3.5279 5.3702 39 1 8.0874 3.8989 5.8190 40 1 9.7578 5.5410 2.2387 41 1 10.7446 4.4862 3.2791 42 1 9.3997 3.8002 2.3367 43 1 12.1699 5.0832 5.7107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348776694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:44 Heat of formation + Delta-G solvation = -63.778215 kcal Electronic energy + Delta-G solvation = -21987.233476 eV Core-core repulsion = 18646.800635 eV Total energy + Delta-G solvation = -3340.432841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49125 -38.84037 -37.70086 -36.48722 -34.08138 -33.22478 -31.58483 -30.90087 -26.49961 -25.72902 -25.33769 -24.32324 -23.82294 -21.65837 -21.02891 -20.11396 -19.00225 -18.19353 -16.94625 -16.12248 -15.66128 -15.62935 -15.04858 -14.86315 -14.67815 -14.47513 -14.07729 -13.62217 -13.02331 -12.94883 -12.93659 -12.70820 -12.43922 -12.23060 -11.64207 -11.49214 -11.42071 -11.40169 -11.36529 -11.19310 -10.90059 -10.67928 -10.40962 -10.37635 -10.20737 -9.66195 -9.56245 -9.24818 -8.98230 -8.80161 -8.61790 -8.38312 -6.03394 -4.14163 1.59565 2.47179 3.26501 3.29877 3.35226 3.39263 3.63690 3.83562 4.34388 4.38652 4.45517 4.61311 4.76425 4.81687 4.99281 5.12136 5.23334 5.35049 5.45869 5.57492 5.65510 5.71994 5.77971 5.97829 6.10127 6.20246 6.22464 6.46083 6.61464 6.81344 6.84482 6.93074 6.99656 7.07760 7.32619 7.54412 7.65458 7.70174 7.94616 7.99421 8.11779 8.30702 8.39803 8.86320 9.51841 10.98072 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045683 B = 0.002791 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.773959 B =10029.076013 C =10184.620036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.157 4.157 4 H 0.109 0.891 5 C -0.186 4.186 6 C 0.080 3.920 7 H 0.140 0.860 8 N -0.679 5.679 9 C 0.512 3.488 10 O -0.518 6.518 11 C 0.496 3.504 12 O -0.535 6.535 13 N -0.679 5.679 14 C 0.128 3.872 15 C 0.055 3.945 16 C -0.134 4.134 17 C -0.134 4.134 18 C -0.506 4.506 19 H 0.059 0.941 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.894 3.106 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.413 0.587 34 H 0.411 0.589 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.009 0.991 38 H 0.087 0.913 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.087 0.913 42 H 0.008 0.992 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.352 -8.518 -10.523 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.176 4.176 4 H 0.127 0.873 5 C -0.224 4.224 6 C -0.026 4.026 7 H 0.158 0.842 8 N -0.331 5.331 9 C 0.294 3.706 10 O -0.393 6.393 11 C 0.276 3.724 12 O -0.414 6.414 13 N -0.331 5.331 14 C 0.006 3.994 15 C 0.055 3.945 16 C -0.192 4.192 17 C -0.192 4.192 18 C -0.545 4.545 19 H 0.077 0.923 20 C -0.136 4.136 21 N -0.523 5.523 22 Si 0.722 3.278 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.211 1.211 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.250 0.750 34 H 0.249 0.751 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.028 0.972 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.106 0.894 42 H 0.027 0.973 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.099 -8.566 -10.424 21.005 hybrid contribution 0.311 0.869 0.477 1.039 sum -15.787 -7.697 -9.947 20.185 Atomic orbital electron populations 1.21743 0.95264 1.01693 1.01973 1.21123 0.96116 0.93509 1.02410 1.22955 0.93458 0.98972 1.02219 0.87275 1.23648 1.03592 1.03118 0.92083 1.21819 0.94249 0.91124 0.95423 0.84197 1.45128 1.16931 1.18535 1.52459 1.20491 0.81976 0.88330 0.79813 1.90744 1.54406 1.35059 1.59089 1.19905 0.83643 0.87370 0.81508 1.90727 1.55014 1.34968 1.60682 1.46223 1.15159 1.21120 1.50548 1.21956 0.98215 0.85199 0.94033 1.18391 0.87627 0.95513 0.93010 1.21859 1.03366 0.95523 0.98419 1.21859 1.03838 0.96712 0.96747 1.20984 1.00785 1.00130 1.32582 0.92291 1.24887 0.96529 0.96087 0.96046 1.69812 1.09546 1.28362 1.44538 0.86500 0.78683 0.82948 0.79647 1.19763 1.21049 1.21057 0.92598 0.92608 0.92604 0.91509 0.91272 0.87766 0.88282 0.75029 0.75147 0.91956 0.91960 0.97248 0.89411 0.95330 0.95325 0.89422 0.97260 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.87 37.16 0.37 -0.50 16 2 C -0.09 -0.62 6.22 -26.73 -0.17 -0.79 16 3 C -0.16 -1.19 5.66 -90.59 -0.51 -1.70 16 4 H 0.11 0.80 8.08 -51.92 -0.42 0.38 16 5 C -0.19 -1.42 10.10 -26.73 -0.27 -1.69 16 6 C 0.08 0.79 6.16 -67.89 -0.42 0.38 16 7 H 0.14 1.53 7.40 -51.93 -0.38 1.14 16 8 N -0.68 -8.18 5.56 -54.20 -0.30 -8.48 16 9 C 0.51 7.93 7.89 -11.58 -0.09 7.84 16 10 O -0.52 -9.00 16.04 5.51 0.09 -8.91 16 11 C 0.50 8.74 7.89 -11.58 -0.09 8.65 16 12 O -0.54 -10.25 16.48 5.49 0.09 -10.16 16 13 N -0.68 -12.64 4.95 -60.73 -0.30 -12.94 16 14 C 0.13 2.67 4.50 -4.04 -0.02 2.65 16 15 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 16 C -0.13 -3.07 8.08 37.16 0.30 -2.76 16 17 C -0.13 -3.06 8.08 37.15 0.30 -2.76 16 18 C -0.51 -13.11 8.01 -34.44 -0.28 -13.39 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 21 N -0.88 -23.57 9.35 55.43 0.52 -23.05 16 22 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.69 8.03 -51.93 -0.42 0.27 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.41 4.49 8.30 -40.82 -0.34 4.15 16 34 H 0.41 7.54 5.63 -40.82 -0.23 7.31 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 38 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 42 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 43 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -28.12 351.86 -7.56 -35.68 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.89 Total: 8.25 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.05 Total: -1.25 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.08 Total: -44.48 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.18 Total: -19.07 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.12 -7.56 -35.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348776694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.102 kcal (2) G-P(sol) polarization free energy of solvation -28.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds