Wall clock time and date at job start Tue Mar 31 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 110.64213 * 2 1 4 4 C 1.34778 * 119.99897 * 303.14568 * 3 2 1 5 5 O 1.21279 * 119.99931 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99861 * 180.02562 * 4 3 2 7 7 C 1.52995 * 109.47241 * 180.02562 * 6 4 3 8 8 H 1.08997 * 110.46239 * 52.39156 * 7 6 4 9 9 C 1.54515 * 110.51281 * 174.99754 * 7 6 4 10 10 C 1.54483 * 104.06245 * 118.64105 * 9 7 6 11 11 O 1.44423 * 104.80084 * 23.98004 * 10 9 7 12 12 C 1.44428 * 105.27792 * 319.48549 * 11 10 9 13 13 C 1.55151 * 110.72284 * 123.14588 * 2 1 3 14 14 C 1.54907 * 101.58607 * 153.86274 * 13 2 1 15 15 N 1.47428 * 104.83214 * 322.99086 * 14 13 2 16 16 C 1.36935 * 125.64921 * 204.10557 * 15 14 13 17 17 H 1.07999 * 119.99866 * 169.96000 * 16 15 14 18 18 C 1.38813 * 119.99567 * 349.96481 * 16 15 14 19 19 N 1.31612 * 120.00563 * 350.42002 * 18 16 15 20 20 Si 1.86808 * 119.99594 * 170.42416 * 18 16 15 21 21 H 1.48505 * 109.46851 * 94.13632 * 20 18 16 22 22 H 1.48492 * 109.47053 * 214.13657 * 20 18 16 23 23 H 1.48500 * 109.46994 * 334.13721 * 20 18 16 24 24 C 1.47023 * 108.70231 * 24.12647 * 15 14 13 25 25 H 1.08999 * 109.46923 * 296.85566 * 1 2 3 26 26 H 1.08999 * 109.47262 * 56.86000 * 1 2 3 27 27 H 1.09002 * 109.46987 * 176.85657 * 1 2 3 28 28 H 0.97005 * 119.99920 * 123.14394 * 3 2 1 29 29 H 1.09008 * 109.46952 * 299.99545 * 6 4 3 30 30 H 1.09000 * 109.47829 * 59.99394 * 6 4 3 31 31 H 1.08995 * 110.51097 * 237.28743 * 9 7 6 32 32 H 1.09001 * 110.51139 * 359.86282 * 9 7 6 33 33 H 1.08998 * 110.37086 * 142.80963 * 10 9 7 34 34 H 1.08998 * 110.37046 * 265.14715 * 10 9 7 35 35 H 1.08994 * 110.37118 * 281.68196 * 12 11 10 36 36 H 1.08999 * 110.37164 * 159.34559 * 12 11 10 37 37 H 1.09006 * 111.00475 * 271.93818 * 13 2 1 38 38 H 1.09004 * 111.00551 * 35.78858 * 13 2 1 39 39 H 1.09003 * 110.36577 * 81.82584 * 14 13 2 40 40 H 1.08997 * 110.36871 * 204.15042 * 14 13 2 41 41 H 0.97003 * 120.00613 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.88149 * 239.53021 * 24 15 14 43 43 H 1.08997 * 109.88502 * 118.35769 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.6868 2.2265 -0.9773 5 8 0.9359 1.8613 -1.8569 6 6 2.2185 3.6366 -0.9776 7 6 1.6596 4.3921 -2.1849 8 1 0.5732 4.3096 -2.2166 9 6 2.0887 5.8758 -2.1412 10 6 2.9219 6.0637 -3.4285 11 8 2.4578 5.0288 -4.3226 12 6 2.2842 3.8591 -3.4934 13 6 2.0790 -0.7934 1.2150 14 6 3.4632 -1.2487 0.6895 15 7 3.2445 -1.5520 -0.7365 16 6 4.0040 -2.3997 -1.4979 17 1 3.6718 -2.6825 -2.4858 18 6 5.2010 -2.8956 -0.9997 19 7 5.7004 -2.4106 0.1173 20 14 6.1033 -4.2514 -1.9148 21 1 7.1169 -3.6493 -2.8178 22 1 6.7780 -5.1436 -0.9382 23 1 5.1321 -5.0389 -2.7159 24 6 2.0760 -0.7932 -1.2060 25 1 -0.3633 0.4642 0.9168 26 1 -0.3634 0.5618 -0.8605 27 1 -0.3633 -1.0261 -0.0564 28 1 2.6472 1.6629 0.7034 29 1 1.9125 4.1405 -0.0607 30 1 3.3068 3.6146 -1.0342 31 1 1.2146 6.5267 -2.1536 32 1 2.6970 6.0716 -1.2581 33 1 2.7379 7.0479 -3.8592 34 1 3.9830 5.9339 -3.2160 35 1 3.2476 3.3912 -3.2910 36 1 1.6105 3.1499 -3.9741 37 1 2.1850 -0.1484 2.0873 38 1 1.4452 -1.6512 1.4402 39 1 4.1931 -0.4465 0.7991 40 1 3.7960 -2.1406 1.2204 41 1 6.5366 -2.7573 0.4656 42 1 1.3129 -1.4784 -1.5751 43 1 2.3740 -0.1057 -1.9976 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484035497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:53 Heat of formation + Delta-G solvation = -62.817132 kcal Electronic energy + Delta-G solvation = -23278.533694 eV Core-core repulsion = 19938.142529 eV Total energy + Delta-G solvation = -3340.391165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22905 -39.14921 -37.30082 -33.99511 -33.53416 -31.89908 -30.25584 -29.60610 -28.69198 -26.84684 -25.68179 -23.64114 -22.99331 -21.27192 -20.41742 -19.96703 -18.99842 -17.35119 -16.74407 -16.08499 -15.87272 -15.59142 -15.32160 -14.72705 -14.65744 -13.99155 -13.73704 -13.46154 -13.17619 -12.90268 -12.76834 -12.40323 -12.19916 -11.83735 -11.74724 -11.65748 -11.59460 -11.33856 -11.00418 -10.87708 -10.81176 -10.71314 -10.42422 -10.36312 -10.09119 -10.00244 -9.81233 -9.69350 -9.23079 -8.62354 -8.57914 -6.78299 -5.74976 -3.06053 2.91348 3.39975 3.43064 3.46154 3.48513 3.95563 4.44002 4.50904 4.64266 4.76589 4.93215 4.97315 5.13192 5.25048 5.35954 5.38099 5.46288 5.50347 5.54618 5.55697 5.59523 5.68015 5.73176 5.80788 5.99726 6.05191 6.15457 6.16729 6.19965 6.33120 6.43104 6.51630 6.70854 6.75856 6.82692 7.14372 7.44732 7.52813 7.76657 7.86640 8.26060 8.54558 9.20458 9.82262 10.49746 11.38574 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.004541 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.845753 B = 6164.335682 C = 7045.502395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.160 3.840 3 N -0.708 5.708 4 C 0.513 3.487 5 O -0.538 6.538 6 C -0.135 4.135 7 C -0.103 4.103 8 H 0.092 0.908 9 C -0.153 4.153 10 C 0.043 3.957 11 O -0.379 6.379 12 C 0.054 3.946 13 C -0.149 4.149 14 C 0.174 3.826 15 N -0.603 5.603 16 C -0.225 4.225 17 H 0.075 0.925 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.138 3.862 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.398 0.602 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.252 0.748 42 H 0.030 0.970 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 15.195 2.288 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.074 3.926 3 N -0.359 5.359 4 C 0.299 3.701 5 O -0.415 6.415 6 C -0.175 4.175 7 C -0.122 4.122 8 H 0.110 0.890 9 C -0.190 4.190 10 C -0.034 4.034 11 O -0.298 6.298 12 C -0.023 4.023 13 C -0.188 4.188 14 C 0.049 3.951 15 N -0.329 5.329 16 C -0.354 4.354 17 H 0.093 0.907 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.011 3.989 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.232 0.768 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.991 14.810 1.435 16.890 hybrid contribution 1.049 -0.576 0.266 1.226 sum -6.942 14.234 1.702 15.928 Atomic orbital electron populations 1.22069 0.94216 1.02381 1.02342 1.21302 0.93039 0.80598 0.97643 1.46005 1.49571 1.12053 1.28278 1.20474 0.81035 0.87075 0.81526 1.90643 1.36238 1.78349 1.36305 1.21789 1.02449 0.93342 0.99940 1.22259 1.02097 0.93370 0.94451 0.88984 1.23035 1.00742 0.96369 0.98902 1.23387 0.97655 0.92615 0.89759 1.89129 1.87257 1.21188 1.32237 1.23534 1.00270 0.88350 0.90142 1.23349 1.01053 0.99046 0.95313 1.21391 0.89498 0.99354 0.84865 1.44486 1.31072 1.50565 1.06810 1.19041 0.99638 1.18236 0.98443 0.90696 1.24782 0.96822 1.00638 0.98141 1.69937 1.20689 1.43893 1.22339 0.86141 0.79596 0.81694 0.78599 1.21658 1.21630 1.20577 1.21597 0.90369 0.93016 0.93905 0.93335 0.90421 0.91929 0.76842 0.88827 0.88730 0.90605 0.90336 0.89412 0.92373 0.92296 0.88043 0.91797 0.90625 0.95728 0.91225 0.93808 0.95264 0.95128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.43 37.16 0.31 -2.03 16 2 C 0.16 2.79 0.81 -129.98 -0.10 2.68 16 3 N -0.71 -10.64 5.15 -45.91 -0.24 -10.88 16 4 C 0.51 7.57 6.87 -10.99 -0.08 7.49 16 5 O -0.54 -9.54 12.01 5.56 0.07 -9.47 16 6 C -0.14 -1.44 4.92 -27.89 -0.14 -1.58 16 7 C -0.10 -1.14 2.71 -89.05 -0.24 -1.39 16 8 H 0.09 1.11 7.90 -51.93 -0.41 0.70 16 9 C -0.15 -1.32 6.74 -25.16 -0.17 -1.49 16 10 C 0.04 0.42 7.63 37.94 0.29 0.71 16 11 O -0.38 -5.24 11.65 -35.23 -0.41 -5.65 16 12 C 0.05 0.73 6.38 37.93 0.24 0.97 16 13 C -0.15 -2.61 6.07 -24.59 -0.15 -2.76 16 14 C 0.17 4.05 5.40 -2.53 -0.01 4.03 16 15 N -0.60 -15.51 3.39 -170.07 -0.58 -16.09 16 16 C -0.23 -6.39 10.24 -15.06 -0.15 -6.54 16 17 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 18 C -0.01 -0.22 5.40 -17.43 -0.09 -0.31 16 19 N -0.92 -26.79 10.68 55.49 0.59 -26.19 16 20 Si 0.91 22.25 29.56 -169.99 -5.03 17.23 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.14 3.04 6.20 -3.06 -0.02 3.03 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.30 5.97 -51.93 -0.31 0.99 16 27 H 0.06 0.94 8.06 -51.93 -0.42 0.53 16 28 H 0.40 5.12 8.49 -40.82 -0.35 4.78 16 29 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 30 H 0.09 0.96 7.96 -51.93 -0.41 0.54 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.55 7.73 -51.93 -0.40 0.15 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.83 7.74 -51.93 -0.40 0.42 16 36 H 0.10 1.52 7.80 -51.93 -0.40 1.12 16 37 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 39 H 0.02 0.61 8.07 -51.93 -0.42 0.19 16 40 H 0.07 1.82 6.94 -51.93 -0.36 1.45 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.03 0.66 7.76 -51.93 -0.40 0.26 16 43 H 0.03 0.74 6.91 -51.93 -0.36 0.38 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -32.40 335.87 -7.99 -40.39 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.15 Total: 2.79 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.31 Total: 2.81 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.22 Total: -53.16 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.34 Total: -15.12 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.40 -7.99 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484035497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.424 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds