Wall clock time and date at job start Tue Mar 31 2020 02:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30989 * 1 3 3 C 1.50702 * 120.00203 * 2 1 4 4 C 1.52992 * 109.47487 * 124.99811 * 3 2 1 5 5 O 1.42900 * 109.47343 * 180.02562 * 4 3 2 6 6 C 1.42895 * 114.00512 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47617 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99849 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00376 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99965 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46687 * 180.02562 * 10 9 7 12 12 H 1.08989 * 112.84969 * 316.19599 * 11 10 9 13 13 C 1.53784 * 113.61171 * 87.50466 * 11 10 9 14 14 C 1.53779 * 87.07962 * 139.97968 * 13 11 10 15 15 H 1.08999 * 113.69285 * 89.12126 * 14 13 11 16 16 N 1.46501 * 113.61179 * 220.01623 * 14 13 11 17 17 C 1.36936 * 119.99985 * 252.49698 * 16 14 13 18 18 H 1.08005 * 120.00002 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00105 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00094 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00227 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47050 * 89.99882 * 21 19 17 23 23 H 1.48497 * 109.47341 * 209.99833 * 21 19 17 24 24 H 1.48504 * 109.47141 * 330.00324 * 21 19 17 25 25 C 1.53779 * 87.08153 * 334.56390 * 14 13 11 26 26 H 1.08002 * 120.00081 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00473 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.00227 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46872 * 4.99714 * 3 2 1 30 30 H 1.08998 * 109.46922 * 245.00423 * 3 2 1 31 31 H 1.09000 * 109.47144 * 60.00069 * 4 3 2 32 32 H 1.09007 * 109.47381 * 299.99994 * 4 3 2 33 33 H 1.09001 * 109.47348 * 59.99253 * 6 5 4 34 34 H 1.09001 * 109.46909 * 299.99988 * 6 5 4 35 35 H 0.97004 * 119.99482 * 0.02562 * 9 7 6 36 36 H 1.08992 * 109.47311 * 60.00333 * 10 9 7 37 37 H 1.08997 * 109.46828 * 299.99977 * 10 9 7 38 38 H 1.09005 * 113.60951 * 254.52327 * 13 11 10 39 39 H 1.08996 * 113.61961 * 25.42950 * 13 11 10 40 40 H 0.97001 * 119.99896 * 72.50210 * 16 14 13 41 41 H 0.96999 * 120.00200 * 180.02562 * 20 19 17 42 42 H 1.08999 * 113.61946 * 270.88503 * 25 14 13 43 43 H 1.09002 * 113.69216 * 139.99129 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1816 5 8 3.7490 2.5709 1.1819 6 6 4.6885 2.6998 2.2509 7 6 5.3805 4.0349 2.1534 8 8 5.0974 4.8006 1.2564 9 7 6.3140 4.3782 3.0630 10 6 6.9862 5.6764 2.9685 11 6 7.9922 5.8142 4.1131 12 1 7.5930 5.4785 5.0701 13 6 9.3800 5.2381 3.7861 14 6 9.9707 6.4540 4.5192 15 1 10.1143 6.2939 5.5878 16 7 11.1543 7.0162 3.8640 17 6 12.3933 6.8395 4.4196 18 1 12.4979 6.2860 5.3411 19 6 13.5147 7.3726 3.7991 20 7 13.3871 8.0485 2.6769 21 14 15.2048 7.1322 4.5574 22 1 15.8117 5.8843 4.0284 23 1 16.0709 8.2883 4.2133 24 1 15.0755 7.0325 6.0335 25 6 8.6671 7.1945 4.1771 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8499 -0.9352 0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6212 1.4026 -0.9314 31 1 3.7399 0.5066 1.0920 32 1 2.4771 1.2357 2.1130 33 1 5.4279 1.9019 2.1830 34 1 4.1654 2.6301 3.2046 35 1 6.5406 3.7656 3.7802 36 1 6.2468 6.4743 3.0362 37 1 7.5096 5.7459 2.0149 38 1 9.5858 4.2883 4.2798 39 1 9.6050 5.2195 2.7198 40 1 11.0602 7.5137 3.0366 41 1 14.1708 8.4207 2.2431 42 1 8.6970 7.7109 3.2176 43 1 8.2963 7.8247 4.9855 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691128562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:48 Heat of formation + Delta-G solvation = -39.885769 kcal Electronic energy + Delta-G solvation = -20865.662521 eV Core-core repulsion = 17526.265735 eV Total energy + Delta-G solvation = -3339.396786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.94032 -38.65931 -37.89644 -35.37232 -34.67133 -33.30085 -30.63138 -30.10148 -28.50913 -26.30881 -25.09650 -23.80903 -23.36668 -21.09234 -20.81802 -20.19001 -19.07083 -17.36057 -17.10679 -17.00603 -16.79139 -15.80981 -15.59139 -15.08349 -14.97327 -14.66431 -14.20006 -13.90128 -13.65154 -13.42687 -13.19802 -12.91237 -12.69816 -11.97166 -11.87614 -11.80451 -11.60236 -11.50490 -11.40017 -11.24141 -10.84313 -10.53866 -10.25328 -10.14122 -10.05882 -9.84876 -9.84016 -9.77640 -9.48802 -9.05467 -8.87577 -6.97146 -5.78926 -3.07935 1.78302 2.53357 2.66984 3.42071 3.47082 3.49072 3.71369 4.49763 4.55583 4.57608 4.65268 4.75040 4.81140 4.88977 4.93903 4.97064 5.00167 5.02093 5.22242 5.39838 5.45893 5.49410 5.53618 5.61868 5.81506 5.83834 5.92508 6.08422 6.17051 6.23597 6.29300 6.30241 6.35022 6.42615 6.57845 6.71474 6.81655 7.10370 7.42325 7.68055 8.15373 8.39531 9.50563 10.08969 10.43090 11.43396 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042435 B = 0.002041 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.677884 B =13717.104263 C =13903.036821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.364 6.364 6 C 0.045 3.955 7 C 0.509 3.491 8 O -0.522 6.522 9 N -0.724 5.724 10 C 0.133 3.867 11 C -0.127 4.127 12 H 0.088 0.912 13 C -0.161 4.161 14 C 0.165 3.835 15 H 0.075 0.925 16 N -0.713 5.713 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.142 4.142 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.400 0.600 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.081 0.919 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.113 -15.547 0.723 27.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.131 4.131 4 C -0.012 4.012 5 O -0.282 6.282 6 C -0.035 4.035 7 C 0.294 3.706 8 O -0.397 6.397 9 N -0.377 5.377 10 C 0.010 3.990 11 C -0.146 4.146 12 H 0.107 0.893 13 C -0.202 4.202 14 C 0.053 3.947 15 H 0.093 0.907 16 N -0.351 5.351 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.182 4.182 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.153 -14.829 0.015 27.495 hybrid contribution 1.078 -0.603 0.638 1.391 sum -22.075 -15.433 0.654 26.942 Atomic orbital electron populations 1.23918 0.95901 1.02107 1.00530 1.22801 0.96024 0.97971 1.00426 1.20644 0.97953 0.95932 0.98597 1.22499 0.94025 0.86078 0.98581 1.88002 1.54316 1.37392 1.48510 1.22196 0.93186 0.96156 0.91931 1.20219 0.80034 0.88125 0.82241 1.90744 1.63206 1.52319 1.33401 1.45938 1.40620 1.20546 1.30642 1.21458 0.94495 0.83556 0.99442 1.22643 0.94581 1.00032 0.97368 0.89348 1.23955 0.93998 1.00216 1.02033 1.21521 0.85775 0.91553 0.95824 0.90661 1.42415 1.01494 1.63460 1.27699 1.19306 0.84386 1.28538 1.05421 0.91095 1.24773 0.98018 1.00585 0.97529 1.69661 1.28984 1.40526 1.18784 0.86186 0.84417 0.77145 0.78399 1.21718 1.21752 1.20745 1.23452 0.97916 0.94880 1.01975 0.88279 0.88367 0.87141 0.90448 0.89835 0.92931 0.93022 0.90200 0.90332 0.76590 0.91668 0.91113 0.92782 0.90322 0.78050 0.93436 0.90078 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.04 14.32 29.02 0.42 -0.63 16 2 C -0.15 -0.93 9.52 -36.02 -0.34 -1.27 16 3 C -0.09 -0.70 6.03 -27.89 -0.17 -0.87 16 4 C 0.06 0.50 5.92 37.15 0.22 0.72 16 5 O -0.36 -4.16 9.88 -55.14 -0.54 -4.70 16 6 C 0.05 0.41 6.42 36.00 0.23 0.64 16 7 C 0.51 6.52 7.91 -10.99 -0.09 6.44 16 8 O -0.52 -9.32 16.50 -14.36 -0.24 -9.56 16 9 N -0.72 -7.86 5.56 -60.30 -0.33 -8.20 16 10 C 0.13 1.73 5.51 -4.04 -0.02 1.71 16 11 C -0.13 -1.64 3.76 -89.80 -0.34 -1.98 16 12 H 0.09 0.97 8.14 -51.94 -0.42 0.55 16 13 C -0.16 -2.59 7.43 -25.92 -0.19 -2.79 16 14 C 0.17 3.15 4.48 -67.12 -0.30 2.85 16 15 H 0.08 1.42 8.10 -51.93 -0.42 0.99 16 16 N -0.71 -17.71 5.40 -52.64 -0.28 -17.99 16 17 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 21 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.14 -2.23 7.39 -25.92 -0.19 -2.43 16 26 H 0.10 0.43 8.06 -52.49 -0.42 0.01 16 27 H 0.10 0.53 7.84 -52.49 -0.41 0.12 16 28 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 29 H 0.08 0.61 7.79 -51.93 -0.40 0.21 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.40 3.09 8.47 -40.82 -0.35 2.74 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.07 7.84 -51.93 -0.41 0.66 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.42 7.89 -51.93 -0.41 1.01 16 40 H 0.39 10.23 7.92 -40.82 -0.32 9.91 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -33.93 364.89 -8.56 -42.49 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -7.34 Total: 7.64 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.02 Total: -4.97 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.11 Total: -53.61 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.78 Total: -14.26 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.93 -8.56 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691128562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.605 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds