Wall clock time and date at job start Tue Mar 31 2020 02:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47295 * 2 1 4 4 C 1.53007 * 109.47235 * 239.99767 * 2 1 3 5 5 C 1.50699 * 109.47353 * 119.99922 * 2 1 3 6 6 O 1.20780 * 119.99548 * 359.97438 * 5 2 1 7 7 C 1.49087 * 120.00309 * 179.97438 * 5 2 1 8 8 O 1.21369 * 119.99843 * 0.02562 * 7 5 2 9 9 N 1.34780 * 120.00059 * 179.97438 * 7 5 2 10 10 C 1.46503 * 119.99703 * 180.02562 * 9 7 5 11 11 C 1.53003 * 109.46622 * 180.02562 * 10 9 7 12 12 H 1.09006 * 112.85187 * 316.19344 * 11 10 9 13 13 C 1.53779 * 113.69268 * 87.46383 * 11 10 9 14 14 C 1.53784 * 87.08045 * 139.99100 * 13 11 10 15 15 H 1.08994 * 113.61477 * 89.11454 * 14 13 11 16 16 N 1.46496 * 113.61320 * 220.02163 * 14 13 11 17 17 C 1.36942 * 119.99927 * 252.49586 * 16 14 13 18 18 H 1.08001 * 119.99962 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99989 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00277 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00036 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47101 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47065 * 120.00010 * 21 19 17 24 24 H 1.48498 * 109.47654 * 240.00239 * 21 19 17 25 25 C 1.53779 * 113.61005 * 185.00145 * 11 10 9 26 26 H 1.09000 * 109.46768 * 300.00467 * 1 2 3 27 27 H 1.09002 * 109.47015 * 60.00289 * 1 2 3 28 28 H 1.08993 * 109.46652 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47158 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46854 * 299.99810 * 3 2 1 31 31 H 1.08996 * 109.46986 * 59.99655 * 3 2 1 32 32 H 1.08994 * 109.46948 * 300.00289 * 4 2 1 33 33 H 1.08999 * 109.46678 * 59.99866 * 4 2 1 34 34 H 1.08999 * 109.47188 * 179.97438 * 4 2 1 35 35 H 0.96996 * 119.99832 * 0.02562 * 9 7 5 36 36 H 1.08996 * 109.47333 * 60.00428 * 10 9 7 37 37 H 1.08996 * 109.46828 * 299.99959 * 10 9 7 38 38 H 1.09002 * 113.61557 * 25.44212 * 13 11 10 39 39 H 1.09004 * 113.61501 * 254.53633 * 13 11 10 40 40 H 0.97002 * 120.00490 * 72.49429 * 16 14 13 41 41 H 0.96994 * 120.00158 * 179.97438 * 20 19 17 42 42 H 1.08997 * 113.61646 * 105.38661 * 25 11 10 43 43 H 1.09000 * 113.61527 * 334.47932 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2475 -1.1690 2.0257 7 6 3.4982 -0.8471 1.4661 8 8 4.2869 -0.3858 0.6672 9 7 3.9474 -1.4820 2.5668 10 6 5.3878 -1.6158 2.7986 11 6 5.6256 -2.3715 4.1076 12 1 4.9753 -2.0347 4.9150 13 6 5.6601 -3.8999 3.9412 14 6 6.8208 -3.9047 4.9500 15 1 6.4973 -3.9870 5.9875 16 7 7.8902 -4.8464 4.6096 17 6 8.0486 -5.9950 5.3382 18 1 7.3850 -6.2068 6.1635 19 6 9.0615 -6.8875 5.0154 20 7 9.8700 -6.6297 4.0093 21 14 9.2781 -8.4540 6.0097 22 1 8.2491 -8.5077 7.0791 23 1 9.1262 -9.6315 5.1177 24 1 10.6307 -8.4684 6.6225 25 6 7.1079 -2.4603 4.5070 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7209 -1.2495 35 1 3.3171 -1.8503 3.2055 36 1 5.8390 -0.6257 2.8632 37 1 5.8388 -2.1675 1.9739 38 1 5.9491 -4.2239 2.9414 39 1 4.7624 -4.3992 4.3062 40 1 8.4860 -4.6564 3.8681 41 1 10.5780 -7.2532 3.7839 42 1 7.3792 -1.7974 5.3286 43 1 7.7928 -2.3907 3.6619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691694544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:17 Heat of formation + Delta-G solvation = -52.883475 kcal Electronic energy + Delta-G solvation = -21937.065718 eV Core-core repulsion = 18597.105309 eV Total energy + Delta-G solvation = -3339.960409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09061 -39.14058 -38.30412 -36.34521 -34.68103 -33.30334 -30.35444 -28.27119 -27.63066 -27.49815 -25.58178 -25.11909 -23.83649 -21.63645 -21.10597 -19.54499 -18.89172 -17.66493 -17.05356 -16.67758 -16.02625 -15.67380 -15.19753 -14.96105 -14.62527 -14.45522 -13.94679 -13.74278 -13.59561 -13.10953 -12.92992 -12.81154 -12.52012 -12.50906 -12.01217 -11.92416 -11.85421 -11.77716 -11.44639 -11.31750 -11.26025 -11.05545 -10.86906 -10.53571 -10.25245 -10.11734 -9.86564 -9.63132 -9.40350 -9.21248 -8.89466 -6.98535 -5.80310 -3.09256 0.74963 2.55863 2.80636 3.41328 3.47072 3.49307 3.91673 4.26717 4.49839 4.51036 4.56538 4.89819 4.91130 4.94415 5.17202 5.23193 5.29878 5.43275 5.44264 5.45524 5.49041 5.54653 5.60453 5.71780 5.74414 5.77211 5.87847 5.90897 5.95129 6.05777 6.14032 6.25379 6.30865 6.35843 6.55676 6.59625 6.78318 7.07439 7.23111 7.68033 7.80653 8.38284 9.49472 10.07317 10.41484 11.42145 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035254 B = 0.002669 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.042046 B =10488.212323 C =10554.558578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.144 4.144 5 C 0.360 3.640 6 O -0.419 6.419 7 C 0.471 3.529 8 O -0.508 6.508 9 N -0.699 5.699 10 C 0.128 3.872 11 C -0.129 4.129 12 H 0.090 0.910 13 C -0.162 4.162 14 C 0.166 3.834 15 H 0.076 0.924 16 N -0.713 5.713 17 C -0.244 4.244 18 H 0.072 0.928 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.141 4.141 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.062 0.938 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.440 16.074 -7.332 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 C -0.201 4.201 4 C -0.202 4.202 5 C 0.230 3.770 6 O -0.288 6.288 7 C 0.253 3.747 8 O -0.384 6.384 9 N -0.351 5.351 10 C 0.005 3.995 11 C -0.149 4.149 12 H 0.108 0.892 13 C -0.203 4.203 14 C 0.054 3.946 15 H 0.094 0.906 16 N -0.351 5.351 17 C -0.375 4.375 18 H 0.090 0.910 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.181 4.181 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.244 0.756 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.258 15.966 -7.322 24.624 hybrid contribution 0.064 -1.038 0.540 1.171 sum -17.194 14.929 -6.782 23.759 Atomic orbital electron populations 1.21788 0.92196 1.02866 1.02500 1.20963 0.97330 0.97458 0.93930 1.21909 1.03340 0.92364 1.02451 1.21918 1.03399 0.99750 0.95098 1.25023 0.88747 0.76365 0.86896 1.90412 1.58686 1.35947 1.43773 1.20882 0.90712 0.80367 0.82716 1.90721 1.56925 1.46466 1.44293 1.46106 1.09706 1.55675 1.23644 1.21611 0.78848 1.00820 0.98190 1.22670 0.99158 0.97317 0.95722 0.89216 1.23974 1.01310 0.92477 1.02583 1.21512 0.89036 0.88028 0.96027 0.90599 1.42420 1.34199 1.20881 1.37554 1.19350 1.11468 0.96715 1.09953 0.91033 1.24775 0.98306 0.99205 0.98673 1.69668 1.20703 1.37489 1.30151 0.86118 0.77474 0.83378 0.79216 1.20525 1.21844 1.21825 1.23452 0.93792 0.99748 1.01114 0.92007 0.91435 0.91939 0.90074 0.91165 0.92578 0.92465 0.91159 0.90033 0.75563 0.91128 0.90603 0.90294 0.92658 0.78056 0.93479 0.91890 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 7.76 37.16 0.29 -0.72 16 2 C -0.10 -0.82 0.76 -155.65 -0.12 -0.94 16 3 C -0.14 -1.11 8.29 37.16 0.31 -0.80 16 4 C -0.14 -1.19 8.29 37.16 0.31 -0.88 16 5 C 0.36 3.88 6.03 -29.81 -0.18 3.70 16 6 O -0.42 -5.04 16.09 5.98 0.10 -4.94 16 7 C 0.47 5.73 7.55 -11.75 -0.09 5.64 16 8 O -0.51 -7.09 13.39 5.48 0.07 -7.02 16 9 N -0.70 -8.13 5.55 -60.85 -0.34 -8.47 16 10 C 0.13 1.60 5.51 -4.04 -0.02 1.58 16 11 C -0.13 -1.69 3.75 -89.81 -0.34 -2.03 16 12 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 13 C -0.16 -2.66 7.43 -25.92 -0.19 -2.85 16 14 C 0.17 3.17 4.48 -67.12 -0.30 2.87 16 15 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 16 N -0.71 -17.64 5.40 -52.64 -0.28 -17.93 16 17 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 21 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C -0.14 -2.18 7.39 -25.92 -0.19 -2.38 16 26 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 29 H 0.08 0.75 6.43 -51.93 -0.33 0.42 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.80 6.43 -51.93 -0.33 0.47 16 35 H 0.41 4.29 7.94 -40.82 -0.32 3.96 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.06 7.85 -51.93 -0.41 0.65 16 38 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.39 10.14 7.92 -40.82 -0.32 9.82 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.31 8.08 -51.93 -0.42 0.90 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -30.80 353.34 -7.36 -38.16 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -7.16 Total: 9.12 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -0.77 Total: -4.16 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.10 Total: -53.74 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.17 Total: -11.96 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.80 -7.36 -38.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691694544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.723 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds