Wall clock time and date at job start Tue Mar 31 2020 02:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00063 * 2 1 4 4 C 1.53004 * 109.47388 * 239.99936 * 3 2 1 5 5 O 1.42904 * 109.47420 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.47514 * 120.00157 * 3 2 1 7 7 C 1.50694 * 109.47514 * 179.97438 * 6 3 2 8 8 O 1.21283 * 120.00215 * 359.97438 * 7 6 3 9 9 N 1.34781 * 119.99929 * 180.02562 * 7 6 3 10 10 C 1.46499 * 120.00242 * 359.97438 * 9 7 6 11 11 C 1.46503 * 119.99607 * 179.97438 * 9 7 6 12 12 C 1.53783 * 113.61322 * 63.22693 * 11 9 7 13 13 C 1.53782 * 87.08412 * 89.11281 * 12 11 9 14 14 N 1.46503 * 113.61371 * 270.80170 * 13 12 11 15 15 C 1.36938 * 120.00139 * 202.16753 * 14 13 12 16 16 H 1.08008 * 119.99484 * 359.97438 * 15 14 13 17 17 C 1.38803 * 120.00171 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00204 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47076 * 90.00168 * 19 17 15 21 21 H 1.48503 * 109.47171 * 210.00073 * 19 17 15 22 22 H 1.48494 * 109.47020 * 329.99902 * 19 17 15 23 23 C 1.53785 * 87.17175 * 25.38933 * 13 12 11 24 24 H 1.07998 * 119.99899 * 180.02562 * 1 2 3 25 25 H 1.08000 * 119.99520 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99984 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46925 * 300.00252 * 4 3 2 28 28 H 1.09002 * 109.46931 * 59.99974 * 4 3 2 29 29 H 1.08994 * 109.47437 * 179.97438 * 4 3 2 30 30 H 0.96695 * 113.99713 * 60.00291 * 5 3 2 31 31 H 1.09007 * 109.46871 * 59.99866 * 6 3 2 32 32 H 1.08997 * 109.46855 * 300.00156 * 6 3 2 33 33 H 1.09003 * 109.46988 * 268.86408 * 10 9 7 34 34 H 1.09001 * 109.46645 * 28.86149 * 10 9 7 35 35 H 1.09000 * 109.46995 * 148.85938 * 10 9 7 36 36 H 1.08990 * 112.91292 * 291.96830 * 11 9 7 37 37 H 1.08995 * 113.61593 * 334.56175 * 12 11 9 38 38 H 1.08999 * 113.61358 * 203.66010 * 12 11 9 39 39 H 1.08997 * 113.61646 * 139.97969 * 13 12 11 40 40 H 0.97003 * 119.99766 * 22.16573 * 14 13 12 41 41 H 0.97002 * 120.00448 * 180.02562 * 18 17 15 42 42 H 1.08996 * 113.61580 * 89.16153 * 23 13 12 43 43 H 1.09007 * 113.61490 * 220.06306 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9432 1.3862 1.2492 7 6 3.6971 2.6909 1.2489 8 8 3.5462 3.4783 0.3388 9 7 4.5400 2.9824 2.2594 10 6 4.7228 2.0311 3.3584 11 6 5.2734 4.2507 2.2587 12 6 4.3639 5.4882 2.3379 13 6 4.4664 5.3684 3.8676 14 7 3.4353 4.5124 4.4596 15 6 3.1027 4.6545 5.7803 16 1 3.6008 5.3974 6.3857 17 6 2.1254 3.8438 6.3410 18 7 1.5181 2.9388 5.6032 19 14 1.6712 4.0382 8.1426 20 1 0.5723 5.0285 8.2719 21 1 1.2246 2.7297 8.6845 22 1 2.8556 4.5107 8.9034 23 6 5.8088 4.6519 3.6453 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.6515 0.5576 -1.2492 28 1 2.3165 1.3284 -2.1392 29 1 3.4878 2.3302 -1.2495 30 1 0.5434 2.4034 0.7642 31 1 3.6515 0.5576 1.2491 32 1 2.3166 1.3284 2.1391 33 1 4.0112 2.2535 4.1536 34 1 4.5549 1.0178 2.9934 35 1 5.7383 2.1142 3.7457 36 1 6.0210 4.3081 1.4677 37 1 3.3588 5.3167 1.9529 38 1 4.8223 6.3932 1.9392 39 1 4.5625 6.3281 4.3753 40 1 2.9882 3.8449 3.9159 41 1 0.8348 2.3725 5.9950 42 1 6.6630 5.3277 3.6047 43 1 5.9684 3.8062 4.3143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755856277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:46 Heat of formation + Delta-G solvation = -14.314129 kcal Electronic energy + Delta-G solvation = -23925.001733 eV Core-core repulsion = 20586.713816 eV Total energy + Delta-G solvation = -3338.287917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23939 -38.64768 -36.94824 -34.09682 -33.20583 -32.75821 -31.01496 -29.92879 -27.84174 -26.67536 -24.91108 -24.07811 -23.17140 -22.03899 -19.59386 -19.36205 -17.80265 -17.42912 -16.81000 -16.28292 -15.62739 -15.54924 -14.99716 -14.70344 -14.55263 -13.95303 -13.61060 -13.18310 -12.99302 -12.72740 -12.40971 -12.23117 -12.11907 -11.96343 -11.67997 -11.42405 -11.36152 -11.29967 -11.15101 -10.90196 -10.85044 -10.75504 -10.24401 -10.09367 -9.92048 -9.76425 -9.55662 -9.36350 -8.95990 -8.90003 -7.95872 -7.01497 -5.85505 -3.12718 2.26186 3.16737 3.38569 3.44769 3.45304 3.48158 4.46101 4.53076 4.74802 4.96132 5.04031 5.17352 5.27594 5.30886 5.40037 5.50064 5.51738 5.58108 5.70113 5.82709 5.86123 5.91323 5.92514 6.02288 6.06401 6.21535 6.22027 6.36476 6.49476 6.51005 6.60835 6.69125 6.75108 6.78252 6.80788 6.94758 7.23144 7.66321 7.93537 7.95621 8.35102 8.75424 9.46314 10.04384 10.41308 11.36878 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015473 B = 0.006172 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.174080 B = 4535.848566 C = 5757.496854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.185 4.185 3 C 0.179 3.821 4 C -0.145 4.145 5 O -0.540 6.540 6 C -0.165 4.165 7 C 0.519 3.481 8 O -0.527 6.527 9 N -0.590 5.590 10 C 0.068 3.932 11 C 0.131 3.869 12 C -0.161 4.161 13 C 0.165 3.835 14 N -0.703 5.703 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.183 4.183 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.373 0.627 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.388 0.612 41 H 0.255 0.745 42 H 0.078 0.922 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 -5.841 -8.833 11.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.204 4.204 3 C 0.137 3.863 4 C -0.202 4.202 5 O -0.345 6.345 6 C -0.205 4.205 7 C 0.307 3.693 8 O -0.403 6.403 9 N -0.323 5.323 10 C -0.075 4.075 11 C 0.027 3.973 12 C -0.200 4.200 13 C 0.052 3.948 14 N -0.343 5.343 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.225 4.225 24 H 0.115 0.885 25 H 0.123 0.877 26 H 0.130 0.870 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.221 0.779 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.224 0.776 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.067 -5.249 -9.663 12.108 hybrid contribution -0.654 -0.582 1.575 1.802 sum 4.413 -5.831 -8.088 10.904 Atomic orbital electron populations 1.23842 0.96087 1.02272 0.99637 1.23608 0.96763 0.98811 1.01175 1.19798 0.88073 0.83972 0.94429 1.21920 0.98798 1.04098 0.95364 1.86654 1.50141 1.48844 1.48883 1.22415 1.00327 0.96804 1.00969 1.20242 0.79110 0.88340 0.81594 1.90621 1.64002 1.50190 1.35529 1.47498 1.43558 1.18474 1.22807 1.22081 1.03365 0.90909 0.91144 1.21738 0.94055 0.83733 0.97731 1.23692 1.00927 0.96649 0.98769 1.21152 0.88450 0.93683 0.91474 1.42322 1.41874 1.40986 1.09154 1.19313 1.16104 1.15146 0.86471 0.91113 1.24696 0.99185 0.98821 0.98063 1.69631 1.28947 1.24411 1.35117 0.86189 0.78252 0.76829 0.84900 1.21786 1.21831 1.20816 1.24233 1.00649 1.02056 0.95520 0.88469 0.87651 0.86957 0.92323 0.92596 0.88721 0.77941 0.88795 0.87818 0.88500 0.92430 0.91745 0.91534 0.90631 0.90120 0.92188 0.77619 0.93530 0.90347 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 13.93 29.01 0.40 -1.69 16 2 C -0.19 -2.24 8.77 -36.03 -0.32 -2.55 16 3 C 0.18 2.56 0.94 -91.77 -0.09 2.47 16 4 C -0.14 -2.03 8.50 37.16 0.32 -1.72 16 5 O -0.54 -8.89 10.85 -53.47 -0.58 -9.47 16 6 C -0.16 -2.43 3.47 -27.89 -0.10 -2.53 16 7 C 0.52 9.21 6.93 -10.99 -0.08 9.13 16 8 O -0.53 -10.65 11.91 -12.68 -0.15 -10.81 16 9 N -0.59 -10.20 2.08 -172.90 -0.36 -10.56 16 10 C 0.07 1.10 8.65 59.85 0.52 1.62 16 11 C 0.13 2.25 4.14 -67.02 -0.28 1.97 16 12 C -0.16 -2.98 7.13 -25.92 -0.18 -3.17 16 13 C 0.16 3.30 4.55 -67.11 -0.31 2.99 16 14 N -0.70 -16.85 4.06 -52.63 -0.21 -17.07 16 15 C -0.24 -6.33 9.97 -15.06 -0.15 -6.48 16 16 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 17 C -0.01 -0.32 5.50 -17.44 -0.10 -0.42 16 18 N -0.93 -26.03 13.06 55.49 0.72 -25.31 16 19 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.18 -3.08 7.17 -25.82 -0.19 -3.26 16 24 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 25 H 0.11 1.25 6.41 -52.49 -0.34 0.92 16 26 H 0.11 1.16 8.06 -52.49 -0.42 0.73 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.57 5.51 -51.93 -0.29 1.29 16 30 H 0.37 5.46 8.05 45.56 0.37 5.83 16 31 H 0.09 1.15 7.40 -51.93 -0.38 0.77 16 32 H 0.10 1.64 8.11 -51.93 -0.42 1.22 16 33 H 0.10 1.98 6.15 -51.93 -0.32 1.66 16 34 H 0.06 0.78 6.40 -51.93 -0.33 0.45 16 35 H 0.06 0.96 6.55 -51.93 -0.34 0.62 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.64 7.18 -51.93 -0.37 1.26 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 40 H 0.39 9.74 5.53 -40.82 -0.23 9.52 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.36 5.90 -51.93 -0.31 1.05 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -30.12 336.75 -6.95 -37.07 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -5.88 Total: 18.17 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.54 Total: -3.62 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.15 Total: -52.93 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.73 Total: -20.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.12 -6.95 -37.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755856277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.757 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds