Wall clock time and date at job start Tue Mar 31 2020 02:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00237 * 2 1 4 4 C 1.53015 * 109.31302 * 173.69634 * 3 2 1 5 5 C 1.52764 * 109.61377 * 59.04001 * 4 3 2 6 6 H 1.08999 * 109.31709 * 183.49352 * 5 4 3 7 7 O 1.42768 * 110.09795 * 63.97688 * 5 4 3 8 8 C 1.43006 * 114.07362 * 176.42345 * 7 5 4 9 9 C 1.53268 * 109.32639 * 62.06019 * 8 7 5 10 10 N 1.47158 * 108.52478 * 307.98493 * 9 8 7 11 11 C 1.34777 * 121.09006 * 230.77256 * 10 9 8 12 12 O 1.21286 * 119.99426 * 180.02562 * 11 10 9 13 13 C 1.50697 * 120.00431 * 0.02562 * 11 10 9 14 14 C 1.52999 * 109.47236 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47236 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99990 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00311 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99909 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00181 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47482 * 89.99899 * 19 17 15 21 21 H 1.48500 * 109.46926 * 209.99891 * 19 17 15 22 22 H 1.48493 * 109.46897 * 329.99483 * 19 17 15 23 23 C 1.47355 * 117.81377 * 50.79204 * 10 9 8 24 24 H 1.08996 * 110.68140 * 188.31645 * 23 10 9 25 25 C 1.46774 * 111.02904 * 235.98938 * 2 1 3 26 26 H 1.08999 * 109.47151 * 56.04435 * 1 2 3 27 27 H 1.09005 * 109.47528 * 176.04908 * 1 2 3 28 28 H 1.09009 * 109.47003 * 296.04787 * 1 2 3 29 29 H 1.09002 * 109.50323 * 53.73236 * 3 2 1 30 30 H 1.09003 * 109.49987 * 293.65476 * 3 2 1 31 31 H 1.08994 * 109.44852 * 179.08754 * 4 3 2 32 32 H 1.09000 * 109.44403 * 299.00231 * 4 3 2 33 33 H 1.09003 * 109.49751 * 302.10201 * 8 7 5 34 34 H 1.09001 * 109.49604 * 182.01719 * 8 7 5 35 35 H 1.08999 * 109.62449 * 188.27197 * 9 8 7 36 36 H 1.08996 * 109.78632 * 67.79033 * 9 8 7 37 37 H 1.09001 * 109.47063 * 300.00354 * 13 11 10 38 38 H 1.09000 * 109.47123 * 60.00034 * 13 11 10 39 39 H 1.09001 * 109.47085 * 299.99975 * 14 13 11 40 40 H 1.09000 * 109.47336 * 59.99798 * 14 13 11 41 41 H 0.97000 * 119.99786 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.38427 * 66.01821 * 25 2 1 43 43 H 1.08998 * 109.36845 * 306.20162 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5168 1.3295 0.1586 5 6 4.1299 0.5274 -0.9880 6 1 5.2065 0.4479 -0.8370 7 8 3.8860 1.1845 -2.2317 8 6 4.4944 0.5464 -3.3577 9 6 3.9146 -0.8635 -3.5162 10 7 4.0271 -1.5630 -2.2263 11 6 4.5770 -2.7908 -2.1461 12 8 4.6593 -3.3494 -1.0727 13 6 5.0897 -3.4697 -3.3900 14 6 5.6589 -4.8420 -3.0244 15 6 6.1721 -5.5206 -4.2682 16 1 6.0992 -5.0230 -5.2240 17 6 6.7338 -6.7770 -4.1862 18 7 6.8222 -7.3832 -3.0223 19 14 7.3706 -7.6179 -5.7279 20 1 8.7986 -7.2644 -5.9308 21 1 7.2415 -9.0897 -5.5782 22 1 6.5780 -7.1682 -6.9003 23 6 3.5183 -0.8770 -1.0256 24 1 3.7889 -1.4270 -0.1243 25 6 1.9956 -0.7663 -1.1356 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 -0.3633 0.4513 0.9234 29 1 1.5584 1.9290 0.8284 30 1 1.7410 1.8589 -0.9412 31 1 3.9115 2.3453 0.1426 32 1 3.7698 0.8571 1.1078 33 1 5.5711 0.4815 -3.2012 34 1 4.2915 1.1265 -4.2580 35 1 4.4751 -1.4064 -4.2772 36 1 2.8665 -0.8008 -3.8085 37 1 4.2717 -3.5934 -4.0998 38 1 5.8725 -2.8595 -3.8405 39 1 6.4767 -4.7186 -2.3144 40 1 4.8758 -5.4519 -2.5740 41 1 7.2177 -8.2670 -2.9646 42 1 1.7354 -0.2603 -2.0653 43 1 1.5585 -1.7648 -1.1318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332699421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:15 Heat of formation + Delta-G solvation = -75.255129 kcal Electronic energy + Delta-G solvation = -23352.175531 eV Core-core repulsion = 20011.245014 eV Total energy + Delta-G solvation = -3340.930517 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80092 -38.58124 -37.28806 -34.74844 -33.55716 -32.85530 -31.26929 -30.21998 -28.56165 -26.61479 -25.72208 -23.80893 -23.16511 -22.76719 -21.27034 -19.47838 -18.54992 -17.19267 -16.57494 -16.23138 -16.07606 -15.79143 -15.55340 -14.84704 -14.74963 -14.54250 -14.41244 -13.97378 -13.48582 -13.25095 -13.12770 -12.67035 -12.55932 -12.19795 -12.16307 -11.95426 -11.78670 -11.50632 -11.23537 -11.12284 -10.94635 -10.87751 -10.60969 -10.52071 -10.07944 -9.99021 -9.64476 -9.20250 -9.01412 -8.58232 -8.35542 -8.29576 -5.97374 -4.02132 2.98148 3.14662 3.32190 3.38448 3.40833 3.54330 3.87177 4.44805 4.47164 4.68548 4.72710 4.81210 4.90988 5.00292 5.07124 5.17890 5.24688 5.29169 5.32659 5.37559 5.37855 5.44340 5.53326 5.63166 5.67628 5.70373 5.73685 5.85141 5.89739 6.04043 6.15162 6.16733 6.53902 6.82561 6.86149 6.93269 6.99172 7.66919 7.72453 7.83735 8.05256 8.36064 8.67797 9.06071 9.61543 11.13547 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030579 B = 0.003716 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.435816 B = 7533.044584 C = 7900.973410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.542 5.542 3 C 0.057 3.943 4 C -0.106 4.106 5 C 0.081 3.919 6 H 0.063 0.937 7 O -0.378 6.378 8 C 0.048 3.952 9 C 0.073 3.927 10 N -0.626 5.626 11 C 0.515 3.485 12 O -0.527 6.527 13 C -0.127 4.127 14 C 0.037 3.963 15 C -0.528 4.528 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.119 3.881 24 H 0.115 0.885 25 C 0.054 3.946 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.024 0.976 41 H 0.261 0.739 42 H 0.041 0.959 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 20.629 2.263 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.266 5.266 3 C -0.071 4.071 4 C -0.144 4.144 5 C 0.023 3.977 6 H 0.081 0.919 7 O -0.297 6.297 8 C -0.029 4.029 9 C -0.050 4.050 10 N -0.363 5.363 11 C 0.306 3.694 12 O -0.402 6.402 13 C -0.167 4.167 14 C 0.000 4.000 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C 0.015 3.985 24 H 0.133 0.867 25 C -0.075 4.075 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.826 20.047 3.347 22.575 hybrid contribution 0.209 -0.367 -1.704 1.755 sum -9.617 19.680 1.644 21.966 Atomic orbital electron populations 1.22329 0.86944 1.02063 1.00694 1.61897 1.07822 1.13728 1.43187 1.22060 0.94932 0.89199 1.00914 1.21521 0.95072 1.00670 0.97095 1.22358 0.98996 0.91518 0.84877 0.91906 1.87869 1.75349 1.51457 1.14992 1.22983 0.97203 0.93029 0.89693 1.22376 1.02202 0.93707 0.86753 1.48494 1.62402 1.17999 1.07374 1.21640 0.75891 0.79326 0.92570 1.90675 1.55295 1.63425 1.30775 1.21890 1.00733 1.00594 0.93494 1.18910 0.96574 0.87832 0.96731 1.21200 1.39967 1.01628 0.93807 0.92633 1.25023 0.95992 0.97370 0.95948 1.70001 1.44520 1.14628 1.23600 0.86591 0.79217 0.78761 0.83382 1.20663 1.21200 1.19890 1.21678 0.92901 0.93080 0.90828 0.86701 1.22284 0.94815 0.98535 0.91844 0.95696 0.91310 0.91242 0.90626 0.93933 0.90258 0.89325 0.92424 0.87790 0.88006 0.91081 0.90235 0.90282 0.95818 0.95789 0.92922 0.94069 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.62 60.06 0.58 0.83 16 2 N -0.54 -6.12 4.92 -242.97 -1.19 -7.31 16 3 C 0.06 0.55 5.36 -3.81 -0.02 0.53 16 4 C -0.11 -1.03 5.81 -26.84 -0.16 -1.18 16 5 C 0.08 0.97 2.86 -26.73 -0.08 0.89 16 6 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 7 O -0.38 -4.41 9.53 -35.23 -0.34 -4.74 16 8 C 0.05 0.49 6.98 37.30 0.26 0.75 16 9 C 0.07 0.85 6.05 -3.54 -0.02 0.82 16 10 N -0.63 -9.52 2.69 -164.61 -0.44 -9.96 16 11 C 0.52 10.16 7.72 -10.99 -0.08 10.07 16 12 O -0.53 -12.62 15.49 5.55 0.09 -12.54 16 13 C -0.13 -2.58 4.02 -27.88 -0.11 -2.70 16 14 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 15 C -0.53 -14.90 9.11 -34.44 -0.31 -15.22 16 16 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 23 C 0.12 1.69 2.81 -67.31 -0.19 1.50 16 24 H 0.12 1.91 7.16 -51.93 -0.37 1.53 16 25 C 0.05 0.69 4.69 -3.86 -0.02 0.68 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.63 8.02 -51.93 -0.42 0.22 16 28 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.08 0.62 8.12 -51.93 -0.42 0.19 16 30 H 0.04 0.44 7.85 -51.93 -0.41 0.03 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.11 6.06 -51.93 -0.31 0.80 16 36 H 0.07 0.76 7.40 -51.93 -0.38 0.37 16 37 H 0.08 1.48 8.01 -51.93 -0.42 1.06 16 38 H 0.08 1.45 7.67 -51.93 -0.40 1.05 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 40 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.04 0.52 6.82 -51.93 -0.35 0.17 16 43 H 0.08 1.08 8.03 -51.93 -0.42 0.67 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -33.76 335.90 -8.72 -42.48 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -7.24 Total: -2.33 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.37 Total: -0.54 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.90 Total: -43.94 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.25 Total: -17.28 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.76 -8.72 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332699421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.776 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds