Wall clock time and date at job start Tue Mar 31 2020 02:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46687 * 110.99857 * 2 1 4 4 C 1.53293 * 110.22457 * 184.66734 * 3 2 1 5 5 C 1.52686 * 108.56158 * 301.68345 * 4 3 2 6 6 H 1.09001 * 109.31667 * 300.00589 * 5 4 3 7 7 O 1.42464 * 111.47250 * 179.03527 * 5 4 3 8 8 C 1.43246 * 113.30561 * 176.26953 * 7 5 4 9 9 C 1.53133 * 110.01882 * 61.23361 * 8 7 5 10 10 N 1.48408 * 108.91364 * 309.08559 * 9 8 7 11 11 C 1.34783 * 122.09055 * 230.01599 * 10 9 8 12 12 O 1.21274 * 120.00532 * 180.69663 * 11 10 9 13 13 C 1.50708 * 119.99550 * 0.70202 * 11 10 9 14 14 C 1.52998 * 109.46660 * 180.02562 * 13 11 10 15 15 C 1.50708 * 109.46660 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00093 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99569 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00337 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99512 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47021 * 60.00651 * 19 17 15 21 21 H 1.48503 * 109.47074 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47464 * 299.99997 * 19 17 15 23 23 C 1.46768 * 116.42578 * 50.68449 * 10 9 8 24 24 H 1.08994 * 109.83919 * 66.02287 * 23 10 9 25 25 C 1.47111 * 111.00168 * 125.18460 * 2 1 3 26 26 H 1.08998 * 109.47472 * 294.81383 * 1 2 3 27 27 H 1.08999 * 109.47763 * 54.81732 * 1 2 3 28 28 H 1.09002 * 109.46808 * 174.81504 * 1 2 3 29 29 H 1.09002 * 109.34125 * 64.43797 * 3 2 1 30 30 H 1.09001 * 109.22266 * 304.82616 * 3 2 1 31 31 H 1.09001 * 109.62309 * 181.96278 * 4 3 2 32 32 H 1.08998 * 109.77891 * 61.49906 * 4 3 2 33 33 H 1.09000 * 109.37607 * 181.40353 * 8 7 5 34 34 H 1.08999 * 109.37967 * 301.17303 * 8 7 5 35 35 H 1.09004 * 109.53998 * 69.31699 * 9 8 7 36 36 H 1.09004 * 109.54011 * 189.49264 * 9 8 7 37 37 H 1.08999 * 109.46886 * 299.99435 * 13 11 10 38 38 H 1.08995 * 109.47154 * 59.99774 * 13 11 10 39 39 H 1.08999 * 109.46959 * 299.99328 * 14 13 11 40 40 H 1.08995 * 109.47573 * 59.99967 * 14 13 11 41 41 H 0.96998 * 120.00076 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.59324 * 54.63275 * 25 2 1 43 43 H 1.09001 * 109.59462 * 294.18638 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9946 1.3695 0.0000 4 6 3.5229 1.3505 -0.1170 5 6 4.0900 0.5487 1.0521 6 1 3.7936 1.0193 1.9895 7 8 5.5113 0.4726 0.9916 8 6 6.0913 -0.1992 2.1160 9 6 5.5872 -1.6437 2.1808 10 7 4.1055 -1.6404 2.0974 11 6 3.3373 -2.3148 2.9758 12 8 2.1298 -2.2962 2.8646 13 6 3.9789 -3.0918 4.0964 14 6 2.8922 -3.7593 4.9416 15 6 3.5339 -4.5369 6.0617 16 1 4.6092 -4.5537 6.1606 17 6 2.7481 -5.2269 6.9603 18 7 1.4387 -5.2069 6.8396 19 14 3.5435 -6.1913 8.3484 20 1 4.3374 -5.2695 9.2000 21 1 2.4888 -6.8391 9.1688 22 1 4.4366 -7.2324 7.7795 23 6 3.5151 -0.8732 0.9942 24 1 3.7766 -1.3341 0.0417 25 6 1.9962 -0.7914 1.1225 26 1 -0.3634 0.4313 0.9327 27 1 -0.3634 0.5921 -0.8399 28 1 -0.3633 -1.0235 -0.0929 29 1 1.7096 1.8655 0.9278 30 1 1.5744 1.9151 -0.8449 31 1 3.9055 2.3705 -0.0811 32 1 3.8150 0.8830 -1.0574 33 1 7.1768 -0.1989 2.0170 34 1 5.8116 0.3213 3.0320 35 1 6.0044 -2.2131 1.3502 36 1 5.8953 -2.0954 3.1238 37 1 4.6349 -3.8560 3.6794 38 1 4.5611 -2.4147 4.7213 39 1 2.2358 -2.9955 5.3585 40 1 2.3104 -4.4366 4.3164 41 1 0.8859 -5.6926 7.4716 42 1 1.5723 -1.7951 1.0930 43 1 1.7344 -0.3093 2.0644 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332699434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:19 Heat of formation + Delta-G solvation = -90.974352 kcal Electronic energy + Delta-G solvation = -23469.325621 eV Core-core repulsion = 20127.713468 eV Total energy + Delta-G solvation = -3341.612154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98086 -39.79101 -38.60059 -35.86386 -35.63719 -33.80164 -33.12234 -31.47802 -29.67374 -27.73812 -27.19372 -24.86384 -24.50499 -23.48491 -22.57657 -21.33242 -20.07269 -18.77516 -17.95614 -17.56081 -17.05964 -17.04989 -16.49020 -16.27382 -16.13969 -15.87688 -15.55931 -15.01580 -14.88366 -14.61487 -14.21991 -14.16016 -13.89887 -13.56206 -13.34287 -13.12603 -12.79648 -12.63347 -12.60720 -12.51701 -12.39825 -12.14675 -11.94721 -11.90128 -11.78790 -11.58318 -11.31803 -11.22361 -10.57296 -10.32857 -9.55096 -9.39086 -8.19144 -6.33485 1.41444 1.45849 1.53500 1.60246 1.76122 2.41828 2.59204 2.92935 3.14042 3.43227 3.60141 3.80499 3.90517 3.96331 4.04673 4.09222 4.18753 4.27865 4.34716 4.41060 4.45682 4.47599 4.50377 4.61297 4.71232 4.78103 4.79418 4.88208 4.89714 4.94162 4.96649 5.04399 5.18003 5.38936 5.48272 5.59618 5.82550 5.90031 6.04250 6.06432 6.15292 6.30138 6.84485 7.18434 7.37032 8.93291 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.004238 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.183428 B = 6605.172094 C = 7623.601649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.557 5.557 3 C 0.055 3.945 4 C -0.098 4.098 5 C 0.083 3.917 6 H 0.044 0.956 7 O -0.377 6.377 8 C 0.047 3.953 9 C 0.068 3.932 10 N -0.620 5.620 11 C 0.513 3.487 12 O -0.573 6.573 13 C -0.115 4.115 14 C 0.046 3.954 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.005 4.005 18 N -0.938 5.938 19 Si 0.973 3.027 20 H -0.262 1.262 21 H -0.288 1.288 22 H -0.262 1.262 23 C 0.119 3.881 24 H 0.086 0.914 25 C 0.082 3.918 26 H 0.017 0.983 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.102 0.898 39 H -0.019 1.019 40 H -0.018 1.018 41 H 0.263 0.737 42 H 0.073 0.927 43 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.583 14.345 -14.697 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.284 5.284 3 C -0.073 4.073 4 C -0.136 4.136 5 C 0.024 3.976 6 H 0.062 0.938 7 O -0.296 6.296 8 C -0.030 4.030 9 C -0.053 4.053 10 N -0.356 5.356 11 C 0.304 3.696 12 O -0.452 6.452 13 C -0.154 4.154 14 C 0.008 3.992 15 C -0.581 4.581 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.578 5.578 19 Si 0.797 3.203 20 H -0.186 1.186 21 H -0.214 1.214 22 H -0.186 1.186 23 C 0.015 3.985 24 H 0.104 0.896 25 C -0.045 4.045 26 H 0.035 0.965 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.161 0.839 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.120 0.880 39 H -0.001 1.001 40 H 0.000 1.000 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 9.059 14.140 -15.232 22.672 hybrid contribution -0.831 -0.563 1.946 2.190 sum 8.227 13.577 -13.286 20.701 Atomic orbital electron populations 1.22316 0.85954 1.02520 1.00928 1.61852 1.08881 1.14088 1.43548 1.22202 0.94688 0.88639 1.01767 1.21517 0.93675 1.01146 0.97283 1.22400 0.81770 0.93746 0.99661 0.93832 1.87926 1.18739 1.77683 1.45225 1.23196 1.00547 0.90273 0.89000 1.22932 0.77169 0.99479 1.05705 1.48646 1.08223 1.50141 1.28541 1.21411 0.86887 0.78368 0.82952 1.90652 1.16489 1.63596 1.74416 1.21648 0.99993 0.99376 0.94399 1.18662 0.93143 0.93864 0.93536 1.21668 0.94059 1.30496 1.11925 0.90539 1.26122 0.95232 0.97833 1.01094 1.70168 1.05684 1.43579 1.38330 0.85384 0.77917 0.78786 0.78225 1.18636 1.21412 1.18649 1.21830 0.93513 0.93008 0.90191 0.89581 1.22148 0.93503 0.98478 0.90401 0.96481 0.88537 0.92162 0.95468 0.87297 0.88088 0.89488 0.83887 0.92796 0.88727 0.86899 0.87905 0.87982 1.00095 0.99990 0.92877 0.90891 0.96807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.60 127.69 1.23 1.94 16 2 N -0.56 -14.36 4.87 -922.57 -4.50 -18.86 16 3 C 0.05 1.07 5.45 86.44 0.47 1.54 16 4 C -0.10 -1.80 5.86 30.59 0.18 -1.62 16 5 C 0.08 1.97 2.53 30.65 0.08 2.05 16 6 H 0.04 1.16 8.12 -2.39 -0.02 1.14 16 7 O -0.38 -8.15 10.52 -148.98 -1.57 -9.72 16 8 C 0.05 0.81 6.94 72.03 0.50 1.31 16 9 C 0.07 1.40 6.58 86.06 0.57 1.97 16 10 N -0.62 -18.78 3.03 -791.79 -2.40 -21.18 16 11 C 0.51 20.45 7.67 87.66 0.67 21.12 16 12 O -0.57 -27.80 11.90 -3.01 -0.04 -27.83 16 13 C -0.11 -4.62 4.06 29.85 0.12 -4.50 16 14 C 0.05 2.54 4.26 29.85 0.13 2.67 16 15 C -0.54 -30.78 9.11 25.60 0.23 -30.54 16 16 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 17 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 18 N -0.94 -59.53 13.29 21.45 0.28 -59.25 16 19 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 20 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 23 C 0.12 3.40 2.93 44.99 0.13 3.54 16 24 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 25 C 0.08 2.72 3.28 86.15 0.28 3.00 16 26 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.10 1.64 8.08 -2.39 -0.02 1.62 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.11 1.56 8.08 -2.39 -0.02 1.54 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.11 2.07 6.24 -2.39 -0.01 2.05 16 37 H 0.10 3.66 8.05 -2.39 -0.02 3.64 16 38 H 0.10 3.61 7.73 -2.39 -0.02 3.59 16 39 H -0.02 -1.23 8.10 -2.39 -0.02 -1.24 16 40 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 41 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.07 2.92 6.41 -2.39 -0.02 2.91 16 43 H 0.01 0.53 7.42 -2.39 -0.02 0.51 16 Total: -1.00 -75.92 333.87 -0.17 -76.09 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.97 Total: 12.07 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.05 Total: 2.63 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -6.61 Total: -99.29 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.60 Total: -37.55 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -75.92 -0.17 -76.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332699434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.880 kcal (2) G-P(sol) polarization free energy of solvation -75.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds