Wall clock time and date at job start Tue Mar 31 2020 02:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00145 * 2 1 4 4 C 1.50701 * 109.47156 * 269.99430 * 3 2 1 5 5 H 1.08008 * 119.99665 * 0.02562 * 4 3 2 6 6 C 1.37867 * 120.00133 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00001 * 179.97438 * 6 4 3 8 8 Si 1.86806 * 120.00134 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.46727 * 89.99993 * 8 6 4 10 10 H 1.48496 * 109.47066 * 209.99726 * 8 6 4 11 11 H 1.48495 * 109.47073 * 330.00028 * 8 6 4 12 12 C 1.34780 * 119.99671 * 179.97438 * 2 1 3 13 13 O 1.21278 * 119.99759 * 180.02562 * 12 2 1 14 14 C 1.50703 * 120.00058 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47015 * 179.97438 * 14 12 2 16 16 N 1.46901 * 109.46835 * 179.97438 * 15 14 12 17 17 C 1.47213 * 110.99981 * 53.51315 * 16 15 14 18 18 C 1.53038 * 109.25749 * 178.43188 * 17 16 15 19 19 O 1.42958 * 109.67051 * 299.94097 * 18 17 16 20 20 C 1.43228 * 113.68915 * 61.68836 * 19 18 17 21 21 C 1.47119 * 110.99685 * 176.29439 * 16 15 14 22 22 C 1.52762 * 117.80554 * 38.87350 * 21 16 15 23 23 C 1.52792 * 117.76101 * 329.91345 * 21 16 15 24 24 H 1.08999 * 109.47632 * 270.00486 * 1 2 3 25 25 H 1.09004 * 109.46490 * 30.00141 * 1 2 3 26 26 H 1.08996 * 109.47241 * 149.99858 * 1 2 3 27 27 H 1.08998 * 109.47599 * 29.99593 * 3 2 1 28 28 H 1.09000 * 109.47203 * 149.99704 * 3 2 1 29 29 H 0.96997 * 119.99819 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47069 * 59.99711 * 14 12 2 31 31 H 1.09001 * 109.47024 * 299.99837 * 14 12 2 32 32 H 1.09001 * 109.47472 * 300.00029 * 15 14 12 33 33 H 1.09004 * 109.47057 * 60.00170 * 15 14 12 34 34 H 1.09000 * 109.50115 * 298.35971 * 17 16 15 35 35 H 1.09000 * 109.50752 * 58.49059 * 17 16 15 36 36 H 1.09000 * 109.44140 * 179.88664 * 18 17 16 37 37 H 1.09002 * 109.40596 * 59.97878 * 18 17 16 38 38 H 1.09005 * 109.61552 * 185.14330 * 20 19 18 39 39 H 1.09009 * 109.76329 * 64.70669 * 20 19 18 40 40 H 1.09000 * 117.50502 * 359.76298 * 22 21 16 41 41 H 1.09001 * 117.50287 * 144.81157 * 22 21 16 42 42 H 1.08997 * 117.50179 * 215.26053 * 23 21 16 43 43 H 1.08993 * 117.50330 * 0.28476 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0976 1.0959 -2.2417 6 6 3.1271 2.8772 -1.6728 7 7 3.3468 3.2565 -2.9128 8 14 3.7352 3.9279 -0.2529 9 1 5.1085 3.5055 0.1225 10 1 3.7512 5.3546 -0.6644 11 1 2.8295 3.7586 0.9115 12 6 2.1389 -1.1673 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4724 0.0005 15 6 2.3795 -3.6353 0.0005 16 7 1.6449 -4.9074 0.0011 17 6 0.6730 -4.9559 -1.1035 18 6 -0.0403 -6.3098 -1.0891 19 8 0.9165 -7.3596 -1.2511 20 6 1.8897 -7.4181 -0.2019 21 6 2.5682 -6.0494 -0.0876 22 6 3.8800 -5.9673 0.6908 23 6 3.8851 -5.8434 -0.8345 24 1 -0.3634 0.0001 1.0276 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5138 27 1 1.6085 2.0284 0.5137 28 1 3.1499 1.1383 0.5139 29 1 3.8237 4.0824 -3.0900 30 1 0.7589 -2.5302 -0.8897 31 1 0.7583 -2.5299 0.8903 32 1 3.0062 -3.5776 -0.8894 33 1 3.0061 -3.5776 0.8906 34 1 -0.0589 -4.1577 -0.9796 35 1 1.1939 -4.8290 -2.0525 36 1 -0.7623 -6.3482 -1.9048 37 1 -0.5594 -6.4357 -0.1389 38 1 2.6355 -8.1777 -0.4365 39 1 1.4010 -7.6641 0.7409 40 1 4.0660 -5.0627 1.2699 41 1 4.2680 -6.8900 1.1222 42 1 4.2762 -6.6848 -1.4066 43 1 4.0740 -4.8576 -1.2593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338594327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:23 Heat of formation + Delta-G solvation = -34.657533 kcal Electronic energy + Delta-G solvation = -22906.886112 eV Core-core repulsion = 19567.716039 eV Total energy + Delta-G solvation = -3339.170073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.48656 -39.04481 -36.98609 -35.11279 -34.77095 -32.58669 -31.09934 -29.07206 -28.33119 -27.00347 -25.84905 -23.33557 -23.25049 -22.42662 -21.49839 -19.01957 -18.48671 -17.10750 -16.98851 -16.67756 -15.99889 -15.82636 -15.56849 -15.21624 -14.97995 -14.37434 -14.03289 -13.83090 -13.63863 -13.30444 -12.79408 -12.67222 -12.33523 -12.27881 -12.24546 -12.02754 -11.80995 -11.59314 -11.29886 -11.10799 -10.93283 -10.83355 -10.61292 -10.53078 -10.38547 -10.16107 -9.77378 -9.56728 -9.05093 -8.60841 -8.33914 -7.73263 -6.10710 -4.09724 3.27464 3.29636 3.32099 3.34137 3.35677 3.44065 3.84967 4.02575 4.35968 4.37885 4.56747 4.69588 4.75282 4.95408 5.03248 5.06951 5.16981 5.19320 5.25769 5.33041 5.34404 5.42789 5.51055 5.53566 5.61426 5.69652 5.73256 5.80747 5.83429 5.93851 6.07235 6.08474 6.13852 6.66661 6.79928 6.84364 6.87693 6.92713 7.30550 7.58915 8.21327 8.44704 8.89683 8.95355 9.49504 11.02703 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028527 B = 0.003665 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.289833 B = 7637.512087 C = 7965.324177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.598 5.598 3 C 0.215 3.785 4 C -0.530 4.530 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.543 6.543 14 C -0.138 4.138 15 C 0.063 3.937 16 N -0.495 5.495 17 C 0.010 3.990 18 C 0.064 3.936 19 O -0.382 6.382 20 C 0.109 3.891 21 C 0.005 3.995 22 C -0.161 4.161 23 C -0.207 4.207 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.036 0.964 29 H 0.265 0.735 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 -19.354 7.300 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C 0.094 3.906 4 C -0.568 4.568 5 H 0.091 0.909 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.294 3.706 13 O -0.421 6.421 14 C -0.179 4.179 15 C -0.065 4.065 16 N -0.218 5.218 17 C -0.118 4.118 18 C -0.013 4.013 19 O -0.301 6.301 20 C 0.032 3.968 21 C -0.086 4.086 22 C -0.199 4.199 23 C -0.246 4.246 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.986 -19.327 7.486 21.872 hybrid contribution 0.760 1.139 -0.015 1.369 sum -6.226 -18.188 7.471 20.625 Atomic orbital electron populations 1.21665 0.80909 1.02962 1.00497 1.47834 1.06306 1.07135 1.71706 1.19663 0.92467 0.80076 0.98348 1.21325 1.37031 1.07191 0.91257 0.90853 1.24864 0.95208 0.97353 0.95609 1.69900 1.41455 1.23584 1.18672 0.86834 0.80136 0.79734 0.82893 1.19892 1.21031 1.19063 1.20261 0.88037 0.85087 0.77214 1.90667 1.13969 1.87317 1.50149 1.21708 0.99339 0.92686 1.04121 1.22029 0.95240 0.86215 1.02989 1.62538 1.15194 1.01297 1.42782 1.22923 0.96417 0.99052 0.93388 1.22638 0.90754 0.85645 1.02275 1.88019 1.42283 1.52291 1.47475 1.22166 0.90761 0.92740 0.91164 1.22456 0.87008 0.93526 1.05596 1.23108 0.98188 1.03954 0.94632 1.23564 1.02048 1.04073 0.94948 0.93570 0.90570 0.92191 0.95226 0.94567 0.92541 0.89279 0.88696 0.92929 0.89447 0.88956 0.93382 0.88323 0.92212 0.88356 0.91879 0.87867 0.88221 0.88503 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.24 59.85 0.61 1.87 16 2 N -0.60 -12.24 2.86 -182.95 -0.52 -12.76 16 3 C 0.22 5.29 4.23 -5.20 -0.02 5.26 16 4 C -0.53 -15.30 9.94 -34.44 -0.34 -15.64 16 5 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 8 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 9 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 12 C 0.51 10.19 7.67 -10.98 -0.08 10.11 16 13 O -0.54 -13.23 15.56 5.56 0.09 -13.14 16 14 C -0.14 -1.97 3.80 -27.88 -0.11 -2.08 16 15 C 0.06 0.89 3.53 -3.82 -0.01 0.87 16 16 N -0.50 -5.95 4.99 -218.68 -1.09 -7.05 16 17 C 0.01 0.11 5.06 -3.63 -0.02 0.09 16 18 C 0.06 0.60 6.90 37.18 0.26 0.86 16 19 O -0.38 -4.26 10.84 -35.23 -0.38 -4.65 16 20 C 0.11 1.05 6.73 37.25 0.25 1.30 16 21 C 0.01 0.06 2.47 -131.61 -0.33 -0.27 16 22 C -0.16 -1.67 9.63 -26.83 -0.26 -1.93 16 23 C -0.21 -2.36 9.50 -26.82 -0.25 -2.62 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 1.19 8.07 -51.93 -0.42 0.78 16 26 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 27 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 28 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.09 1.15 5.62 -51.93 -0.29 0.86 16 31 H 0.09 1.16 8.11 -51.93 -0.42 0.74 16 32 H 0.05 0.85 5.96 -51.93 -0.31 0.54 16 33 H 0.09 1.31 6.45 -51.93 -0.34 0.98 16 34 H 0.09 0.87 6.32 -51.93 -0.33 0.55 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.78 8.07 -51.93 -0.42 0.36 16 39 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.10 1.18 6.48 -51.93 -0.34 0.85 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.10 1.38 6.03 -51.93 -0.31 1.06 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -34.43 336.51 -7.92 -42.35 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.78 Total: 0.38 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.40 Total: -0.17 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.84 Total: -46.82 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.30 Total: -17.79 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.43 -7.92 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338594327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.693 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds