Wall clock time and date at job start Tue Mar 31 2020 02:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99794 * 2 1 4 4 C 1.53004 * 109.46909 * 179.97438 * 3 2 1 5 5 C 1.50697 * 112.84940 * 305.89857 * 4 3 2 6 6 O 1.21279 * 119.99661 * 102.93191 * 5 4 3 7 7 N 1.34771 * 120.00049 * 282.92997 * 5 4 3 8 8 C 1.46972 * 120.59343 * 183.05970 * 7 5 4 9 9 C 1.53373 * 108.63094 * 235.24440 * 8 7 5 10 10 N 1.46957 * 108.63771 * 310.57434 * 9 8 7 11 11 C 1.36932 * 120.59749 * 235.20256 * 10 9 8 12 12 H 1.08006 * 120.00248 * 146.93389 * 11 10 9 13 13 C 1.38815 * 119.99900 * 326.93979 * 11 10 9 14 14 N 1.31619 * 119.99971 * 348.20760 * 13 11 10 15 15 Si 1.86796 * 120.00113 * 168.21599 * 13 11 10 16 16 H 1.48503 * 109.47274 * 180.02562 * 15 13 11 17 17 H 1.48505 * 109.47069 * 299.99504 * 15 13 11 18 18 H 1.48499 * 109.47268 * 59.99520 * 15 13 11 19 19 C 1.46965 * 118.81216 * 55.47853 * 10 9 8 20 20 C 1.46969 * 120.59586 * 3.07477 * 7 5 4 21 21 C 1.53776 * 113.61198 * 77.09678 * 4 3 2 22 22 C 1.53955 * 87.01989 * 89.22536 * 21 4 3 23 23 C 1.53780 * 87.10983 * 25.36402 * 22 21 4 24 24 H 1.09002 * 109.46936 * 299.99652 * 1 2 3 25 25 H 1.08991 * 109.46844 * 60.00020 * 1 2 3 26 26 H 1.09007 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46969 * 60.00391 * 3 2 1 28 28 H 1.08993 * 109.47041 * 300.00391 * 3 2 1 29 29 H 1.08991 * 109.61102 * 115.50154 * 8 7 5 30 30 H 1.09001 * 109.60747 * 354.98900 * 8 7 5 31 31 H 1.08998 * 109.60856 * 190.82873 * 9 8 7 32 32 H 1.09006 * 109.61201 * 70.31980 * 9 8 7 33 33 H 0.96999 * 120.00077 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.61449 * 64.26423 * 19 10 9 35 35 H 1.09008 * 109.61283 * 184.77958 * 19 10 9 36 36 H 1.08997 * 109.61151 * 244.49967 * 20 7 5 37 37 H 1.08998 * 109.60909 * 5.01026 * 20 7 5 38 38 H 1.08994 * 113.61556 * 203.74683 * 21 4 3 39 39 H 1.09003 * 113.61725 * 334.65298 * 21 4 3 40 40 H 1.09001 * 113.54281 * 270.80790 * 22 21 4 41 41 H 1.08998 * 113.74161 * 139.94204 * 22 21 4 42 42 H 1.09000 * 113.60862 * 220.09015 * 23 22 21 43 43 H 1.08991 * 113.61787 * 89.18918 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0541 0.3270 1.1259 6 8 4.4177 -0.8087 0.9047 7 7 4.1138 0.8219 2.3781 8 6 4.6793 0.0208 3.4729 9 6 3.6400 -0.0759 4.5967 10 7 3.1406 1.2743 4.8919 11 6 3.2004 1.7769 6.1643 12 1 3.3567 2.8341 6.3206 13 6 3.0603 0.9275 7.2533 14 7 2.6422 -0.3077 7.0749 15 14 3.4649 1.5377 8.9718 16 1 3.2345 0.4459 9.9517 17 1 4.8883 1.9579 9.0255 18 1 2.5945 2.6940 9.3043 19 6 2.5701 2.0733 3.7983 20 6 3.6144 2.1722 2.6733 21 6 4.1252 0.8221 -1.3725 22 6 4.1939 2.3344 -1.6527 23 6 4.2604 2.5347 -0.1294 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 5.5819 0.5016 3.8496 30 1 4.9187 -0.9785 3.1090 31 1 4.1038 -0.4975 5.4885 32 1 2.8131 -0.7100 4.2768 33 1 2.5440 -0.9011 7.8359 34 1 1.6688 1.5888 3.4227 35 1 2.3271 3.0715 4.1626 36 1 4.4413 2.8062 2.9932 37 1 3.1507 2.5938 1.7815 38 1 5.1030 0.3439 -1.3153 39 1 3.4291 0.2885 -2.0196 40 1 3.2873 2.7347 -2.1066 41 1 5.1000 2.6435 -2.1736 42 1 3.6731 3.3816 0.2256 43 1 5.2751 2.5255 0.2683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339953095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:07 Heat of formation + Delta-G solvation = -24.368877 kcal Electronic energy + Delta-G solvation = -24040.798391 eV Core-core repulsion = 20702.074468 eV Total energy + Delta-G solvation = -3338.723923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.73230 -38.08824 -37.07662 -36.47202 -33.80539 -31.12879 -30.53266 -28.90780 -27.03553 -26.16016 -25.68493 -24.40551 -23.42953 -22.56816 -20.90927 -19.19387 -18.37722 -17.27169 -16.38561 -16.16972 -15.87304 -15.47958 -15.23920 -14.77802 -14.41342 -14.22305 -13.71451 -13.57890 -13.42025 -13.21774 -12.76413 -12.51272 -12.35174 -12.11217 -11.89459 -11.58383 -11.30649 -11.17891 -11.10473 -10.81712 -10.68813 -10.59011 -10.51002 -10.35911 -10.19520 -9.98040 -9.78808 -9.65522 -9.01339 -8.55380 -8.12806 -6.61343 -5.82625 -3.34663 3.12023 3.35050 3.40768 3.41345 3.48533 3.70768 4.36634 4.44715 4.59975 4.65647 4.80408 4.98567 5.16892 5.24069 5.33383 5.35401 5.38366 5.44190 5.48788 5.59962 5.69805 5.71442 5.76279 5.80024 5.82789 5.92532 6.01770 6.09288 6.21079 6.28843 6.41364 6.43695 6.56660 6.74323 6.95048 7.16555 7.34138 7.60183 7.73517 8.05022 8.41680 8.74024 9.14994 9.75700 10.35881 11.24238 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.004887 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.197598 B = 5728.156742 C = 5965.824678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.089 3.911 4 C -0.103 4.103 5 C 0.532 3.468 6 O -0.548 6.548 7 N -0.595 5.595 8 C 0.087 3.913 9 C 0.162 3.838 10 N -0.589 5.589 11 C -0.261 4.261 12 H 0.064 0.936 13 C 0.009 3.991 14 N -0.901 5.901 15 Si 0.906 3.094 16 H -0.290 1.290 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.131 3.869 20 C 0.084 3.916 21 C -0.106 4.106 22 C -0.144 4.144 23 C -0.122 4.122 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.023 0.977 33 H 0.256 0.744 34 H 0.021 0.979 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 6.680 -15.693 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C 0.012 3.988 4 C -0.107 4.107 5 C 0.319 3.681 6 O -0.426 6.426 7 N -0.327 5.327 8 C -0.037 4.037 9 C 0.036 3.964 10 N -0.312 5.312 11 C -0.390 4.390 12 H 0.082 0.918 13 C -0.191 4.191 14 N -0.544 5.544 15 Si 0.735 3.265 16 H -0.216 1.216 17 H -0.209 1.209 18 H -0.208 1.208 19 C 0.004 3.996 20 C -0.040 4.040 21 C -0.144 4.144 22 C -0.181 4.181 23 C -0.159 4.159 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.080 5.767 -15.631 16.661 hybrid contribution -0.178 0.510 1.096 1.222 sum -0.258 6.277 -14.535 15.834 Atomic orbital electron populations 1.22743 0.81004 1.02913 0.99768 1.88006 1.19529 1.26786 1.95300 1.22254 0.90208 0.85633 1.00743 1.22027 0.94902 0.97533 0.96195 1.20009 0.78090 0.86971 0.82987 1.90620 1.49985 1.18692 1.83281 1.47981 1.60386 1.16742 1.07610 1.22480 0.97796 0.95307 0.88077 1.21129 0.93444 0.86729 0.95090 1.43916 1.68844 1.14113 1.04341 1.19102 1.44523 0.93489 0.81936 0.91822 1.25233 0.98859 0.96723 0.98285 1.69973 1.47975 1.06290 1.30154 0.86337 0.78417 0.77757 0.83975 1.21562 1.20879 1.20804 1.21380 0.92859 0.96359 0.89031 1.22629 0.98699 0.83184 0.99528 1.22770 1.01795 0.95908 0.93884 1.22941 1.02268 0.96878 0.96042 1.23054 1.01084 0.95038 0.96750 0.93808 0.94354 0.89582 0.92196 0.92451 0.92421 0.90296 0.88707 0.95848 0.93364 0.96153 0.91694 0.91824 0.90653 0.89341 0.90674 0.90029 0.90957 0.90284 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.99 10.31 -35.23 -0.36 -6.35 16 3 C 0.09 1.17 4.97 37.16 0.18 1.35 16 4 C -0.10 -1.45 0.46 -154.85 -0.07 -1.52 16 5 C 0.53 10.00 6.24 -10.99 -0.07 9.93 16 6 O -0.55 -12.28 15.86 5.56 0.09 -12.19 16 7 N -0.60 -11.33 2.95 -172.21 -0.51 -11.84 16 8 C 0.09 1.84 6.60 -3.59 -0.02 1.81 16 9 C 0.16 3.99 5.45 -3.60 -0.02 3.97 16 10 N -0.59 -14.59 2.94 -171.76 -0.51 -15.09 16 11 C -0.26 -6.98 9.55 -15.06 -0.14 -7.12 16 12 H 0.06 1.65 7.86 -52.48 -0.41 1.24 16 13 C 0.01 0.23 5.01 -17.43 -0.09 0.15 16 14 N -0.90 -26.00 11.21 55.49 0.62 -25.38 16 15 Si 0.91 21.29 29.57 -169.99 -5.03 16.26 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.13 2.65 6.70 -3.37 -0.02 2.62 16 20 C 0.08 1.41 5.49 -3.36 -0.02 1.39 16 21 C -0.11 -1.32 6.89 -25.83 -0.18 -1.50 16 22 C -0.14 -1.33 7.74 -25.83 -0.20 -1.53 16 23 C -0.12 -1.31 5.40 -25.92 -0.14 -1.45 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.96 8.14 -51.92 -0.42 0.53 16 27 H 0.06 0.79 6.52 -51.93 -0.34 0.45 16 28 H 0.06 0.59 7.32 -51.93 -0.38 0.21 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.70 6.99 -51.93 -0.36 1.34 16 31 H 0.09 2.55 6.19 -51.93 -0.32 2.23 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.23 7.93 -51.92 -0.41 0.81 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.02 3.04 -51.93 -0.16 0.86 16 38 H 0.09 1.20 7.94 -51.93 -0.41 0.79 16 39 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 40 H 0.08 0.64 7.62 -51.93 -0.40 0.24 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.72 7.03 -51.93 -0.37 0.35 16 43 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -32.69 333.74 -7.25 -39.94 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.92 Total: 0.02 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 0.32 Total: 9.60 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.39 Total: -52.31 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.27 Total: -18.55 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.69 -7.25 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339953095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.571 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds