Wall clock time and date at job start Tue Mar 31 2020 01:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46652 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99655 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 7 7 C 1.50708 * 109.47141 * 59.99989 * 5 4 2 8 8 O 1.21277 * 119.99770 * 0.02562 * 7 5 4 9 9 N 1.34773 * 120.00130 * 179.97438 * 7 5 4 10 10 C 1.46497 * 120.00178 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.47337 * 180.02562 * 10 9 7 12 12 O 1.21295 * 119.99718 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99991 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99937 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99797 * 0.02562 * 14 13 11 16 16 C 1.38943 * 119.99976 * 179.97438 * 14 13 11 17 17 N 1.31417 * 120.00066 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00132 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46979 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46999 * 120.00032 * 18 16 14 21 21 H 1.48496 * 109.47443 * 240.00425 * 18 16 14 22 22 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 23 23 C 1.52997 * 109.47164 * 59.99836 * 22 5 4 24 24 H 1.09001 * 109.47375 * 59.99966 * 23 22 5 25 25 C 1.52996 * 109.46975 * 180.02562 * 23 22 5 26 26 C 1.52996 * 109.47302 * 239.99872 * 2 1 3 27 27 H 1.09002 * 109.47508 * 299.99916 * 1 2 3 28 28 H 1.09000 * 109.47437 * 60.00514 * 1 2 3 29 29 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 31 31 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 32 32 H 0.97003 * 119.99866 * 0.02562 * 9 7 5 33 33 H 1.08993 * 109.47637 * 300.00542 * 10 9 7 34 34 H 1.09002 * 109.46725 * 60.00263 * 10 9 7 35 35 H 0.96999 * 119.99587 * 359.97438 * 13 11 10 36 36 H 0.96998 * 119.99806 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.47002 * 299.99574 * 22 5 4 38 38 H 1.09000 * 109.47050 * 179.97438 * 22 5 4 39 39 H 1.08996 * 109.47261 * 180.02562 * 25 23 22 40 40 H 1.09004 * 109.47368 * 299.99783 * 25 23 22 41 41 H 1.09001 * 109.47372 * 59.99628 * 25 23 22 42 42 H 1.08992 * 109.47554 * 299.99692 * 26 2 1 43 43 H 1.09004 * 109.47108 * 59.99942 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 1 3.9333 -1.2348 2.1394 7 6 4.0718 0.7004 1.2499 8 8 3.2833 1.6219 1.2503 9 7 5.3967 0.9472 1.2508 10 6 5.8846 2.3285 1.2504 11 6 7.3916 2.3291 1.2509 12 8 7.9984 1.2788 1.2510 13 7 8.0651 3.4965 1.2512 14 6 9.4361 3.4970 1.2522 15 1 9.9764 2.5619 1.2523 16 6 10.1303 4.7006 1.2520 17 7 9.4728 5.8385 1.2514 18 14 11.9983 4.7013 1.2526 19 1 12.4939 3.3014 1.2526 20 1 12.4934 5.4011 0.0400 21 1 12.4928 5.4019 2.4650 22 6 4.0805 -1.4415 0.0004 23 6 3.5705 -0.7203 -1.2488 24 1 3.9334 0.3075 -1.2486 25 6 4.0806 -1.4416 -2.4980 26 6 2.0400 -0.7213 -1.2492 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6765 -0.2074 2.1393 31 1 1.6767 -1.7489 1.2493 32 1 6.0273 0.2101 1.2509 33 1 5.5217 2.8419 0.3601 34 1 5.5204 2.8426 2.1399 35 1 7.5797 4.3364 1.2508 36 1 9.9575 6.6786 1.2509 37 1 3.7176 -2.4694 0.0002 38 1 5.1705 -1.4408 0.0004 39 1 3.7176 -0.9275 -3.3880 40 1 5.1706 -1.4415 -2.4981 41 1 3.7173 -2.4693 -2.4980 42 1 1.6768 -1.7489 -1.2492 43 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344158512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:09 Heat of formation + Delta-G solvation = -131.069651 kcal Electronic energy + Delta-G solvation = -22769.383736 eV Core-core repulsion = 19426.032919 eV Total energy + Delta-G solvation = -3343.350816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67537 -40.23750 -38.60536 -36.26866 -35.40536 -34.16551 -33.41818 -33.03788 -29.32297 -27.45623 -27.12616 -26.52170 -24.03308 -21.74240 -21.51362 -21.27568 -20.53074 -20.00200 -18.08577 -17.22469 -17.00856 -16.79653 -16.31759 -16.17007 -15.76650 -15.69673 -15.55870 -14.89201 -14.63900 -14.43676 -13.96906 -13.57433 -13.55462 -13.43313 -13.21511 -13.10595 -12.92369 -12.80044 -12.66359 -12.58065 -12.46130 -12.11990 -11.99534 -11.60269 -11.59272 -11.49702 -10.91997 -10.91622 -10.57670 -10.49856 -10.14337 -10.05003 -8.52588 -6.02975 1.33958 1.41942 1.56114 1.66892 1.89581 2.08549 2.32779 3.11800 3.14511 3.64102 3.74018 3.78017 3.99165 4.17306 4.20796 4.28836 4.39820 4.40897 4.44914 4.47088 4.58362 4.72046 4.80866 4.86062 4.90143 4.95776 5.01149 5.03885 5.09964 5.16144 5.28629 5.30776 5.36296 5.38315 5.44372 5.48517 5.55019 5.76881 5.90734 6.45125 6.58596 7.01985 7.25135 7.43020 7.92521 8.64614 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029978 B = 0.003395 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.786290 B = 8245.203670 C = 8578.703826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.063 0.937 4 C -0.087 4.087 5 C -0.103 4.103 6 H 0.117 0.883 7 C 0.516 3.484 8 O -0.573 6.573 9 N -0.710 5.710 10 C 0.122 3.878 11 C 0.433 3.567 12 O -0.623 6.623 13 N -0.560 5.560 14 C -0.337 4.337 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.917 5.917 18 Si 0.997 3.003 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.271 1.271 22 C -0.103 4.103 23 C -0.098 4.098 24 H 0.035 0.965 25 C -0.142 4.142 26 C -0.100 4.100 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.412 0.588 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.398 0.602 36 H 0.280 0.720 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.738 -13.830 -3.193 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 H 0.082 0.918 4 C -0.125 4.125 5 C -0.124 4.124 6 H 0.135 0.865 7 C 0.304 3.696 8 O -0.453 6.453 9 N -0.364 5.364 10 C -0.006 4.006 11 C 0.220 3.780 12 O -0.511 6.511 13 N -0.196 5.196 14 C -0.466 4.466 15 H 0.104 0.896 16 C -0.212 4.212 17 N -0.557 5.557 18 Si 0.821 3.179 19 H -0.194 1.194 20 H -0.196 1.196 21 H -0.196 1.196 22 C -0.140 4.140 23 C -0.117 4.117 24 H 0.054 0.946 25 C -0.200 4.200 26 C -0.137 4.137 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.250 0.750 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.232 0.768 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.811 -13.646 -3.193 20.391 hybrid contribution 1.136 0.898 0.060 1.449 sum -13.675 -12.748 -3.133 18.956 Atomic orbital electron populations 1.21737 0.94503 1.02120 1.01206 1.21369 0.96126 1.00544 0.94859 0.91839 1.21376 0.91456 1.01638 0.98012 1.21459 0.98416 0.90636 1.01917 0.86529 1.21298 0.80939 0.92944 0.74397 1.90602 1.55511 1.47862 1.51283 1.45819 1.07826 1.07994 1.74742 1.20715 0.90478 0.85712 1.03702 1.20436 0.89859 0.84202 0.83504 1.90468 1.70564 1.32072 1.57954 1.41864 1.06975 1.07247 1.63471 1.19780 0.82074 0.94426 1.50320 0.89553 1.26142 1.05348 0.93906 0.95764 1.69691 1.38447 0.98178 1.49381 0.84806 0.76303 0.78518 0.78323 1.19359 1.19628 1.19603 1.21633 1.00532 1.00320 0.91530 1.21167 0.96489 0.98363 0.95657 0.94606 1.21779 1.00646 1.01034 0.96509 1.21613 0.93785 1.01248 0.97100 0.93422 0.93074 0.91407 0.92596 0.88768 0.75033 0.89462 0.89156 0.76803 0.91070 0.87933 0.91781 0.92838 0.93359 0.90811 0.90109 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.19 71.98 0.66 -1.82 16 2 C -0.11 -2.40 2.42 -10.79 -0.03 -2.42 16 3 H 0.06 1.89 5.51 -2.39 -0.01 1.88 16 4 C -0.09 -1.70 4.37 30.59 0.13 -1.56 16 5 C -0.10 -2.18 3.01 -11.54 -0.03 -2.22 16 6 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 7 C 0.52 15.55 5.64 87.66 0.49 16.04 16 8 O -0.57 -20.64 13.66 -3.02 -0.04 -20.69 16 9 N -0.71 -23.30 5.42 -466.80 -2.53 -25.83 16 10 C 0.12 4.55 6.15 85.63 0.53 5.07 16 11 C 0.43 20.18 7.85 87.66 0.69 20.87 16 12 O -0.62 -32.24 15.24 -3.08 -0.05 -32.29 16 13 N -0.56 -28.42 5.29 -306.98 -1.62 -30.04 16 14 C -0.34 -18.65 9.68 84.04 0.81 -17.84 16 15 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 16 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 17 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 18 Si 1.00 41.85 29.55 68.60 2.03 43.87 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 22 C -0.10 -1.90 4.64 30.60 0.14 -1.76 16 23 C -0.10 -2.07 2.50 -10.78 -0.03 -2.09 16 24 H 0.04 1.00 7.22 -2.39 -0.02 0.98 16 25 C -0.14 -2.57 9.19 71.98 0.66 -1.91 16 26 C -0.10 -1.87 4.49 30.61 0.14 -1.73 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.41 13.34 6.86 -92.71 -0.64 12.71 16 33 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 36 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.29 7.56 -2.39 -0.02 1.27 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.05 1.06 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -64.81 342.63 2.35 -62.46 By element: Atomic # 1 Polarization: 43.08 SS G_CDS: -0.36 Total: 42.72 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 4.64 Total: 8.50 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -3.87 Total: -104.58 kcal Atomic # 8 Polarization: -52.89 SS G_CDS: -0.09 Total: -52.98 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -64.81 2.35 -62.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344158512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.610 kcal (2) G-P(sol) polarization free energy of solvation -64.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds