Wall clock time and date at job start Tue Mar 31 2020 03:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30836 * 125.90192 * 2 1 4 4 N 1.40084 * 108.20904 * 180.14351 * 3 2 1 5 5 H 0.97001 * 126.04219 * 179.85882 * 4 3 2 6 6 C 1.34947 * 107.92164 * 359.58781 * 4 3 2 7 7 C 1.35317 * 107.74962 * 0.24402 * 6 4 3 8 8 C 1.50698 * 126.04222 * 180.02562 * 7 6 4 9 9 N 1.46896 * 109.47031 * 259.97646 * 8 7 6 10 10 C 1.46904 * 111.00304 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47100 * 179.97438 * 10 9 8 12 12 H 1.08994 * 109.47183 * 60.00342 * 11 10 9 13 13 O 1.42890 * 109.47106 * 299.99418 * 11 10 9 14 14 C 1.53000 * 109.46554 * 179.97438 * 11 10 9 15 15 N 1.46907 * 109.46965 * 185.00236 * 14 11 10 16 16 C 1.46891 * 111.00269 * 66.04545 * 15 14 11 17 17 C 1.46904 * 110.99853 * 190.00098 * 15 14 11 18 18 C 1.50707 * 109.47000 * 169.99744 * 17 15 14 19 19 H 1.07997 * 119.99677 * 359.97438 * 18 17 15 20 20 C 1.37871 * 119.99994 * 180.02562 * 18 17 15 21 21 N 1.31513 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47260 * 59.99859 * 22 20 18 24 24 H 1.48502 * 109.47217 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47238 * 299.99759 * 22 20 18 26 26 H 1.08995 * 109.48061 * 270.30456 * 1 2 3 27 27 H 1.09003 * 109.47004 * 30.31144 * 1 2 3 28 28 H 1.09005 * 109.47121 * 150.30115 * 1 2 3 29 29 H 1.08007 * 126.12498 * 180.26712 * 6 4 3 30 30 H 1.08997 * 109.47285 * 19.97749 * 8 7 6 31 31 H 1.09001 * 109.47152 * 139.97535 * 8 7 6 32 32 H 1.00910 * 110.99935 * 303.94885 * 9 8 7 33 33 H 1.09005 * 109.46573 * 300.00064 * 10 9 8 34 34 H 1.08995 * 109.47091 * 59.99223 * 10 9 8 35 35 H 0.96703 * 114.00399 * 300.00092 * 13 11 10 36 36 H 1.09000 * 109.47803 * 304.99494 * 14 11 10 37 37 H 1.08996 * 109.47612 * 64.99946 * 14 11 10 38 38 H 1.08995 * 109.47266 * 59.99784 * 16 15 14 39 39 H 1.09003 * 109.47403 * 180.02562 * 16 15 14 40 40 H 1.09008 * 109.46989 * 299.99882 * 16 15 14 41 41 H 1.08993 * 109.46831 * 289.99507 * 17 15 14 42 42 H 1.09001 * 109.47259 * 50.00004 * 17 15 14 43 43 H 0.97003 * 120.00111 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0033 5 1 4.3908 1.2078 -0.0060 6 6 3.6141 -0.7154 0.0039 7 6 2.3270 -1.1331 0.0061 8 6 1.8598 -2.5658 0.0143 9 7 1.4790 -2.9644 -1.3473 10 6 1.0167 -4.3584 -1.3779 11 6 0.6294 -4.7360 -2.8091 12 1 1.4960 -4.6263 -3.4609 13 8 -0.4188 -3.8766 -3.2613 14 6 0.1484 -6.1881 -2.8409 15 7 -0.1096 -6.5881 -4.2307 16 6 1.1349 -6.6150 -5.0105 17 6 -0.7939 -7.8868 -4.2863 18 6 -1.2593 -8.1494 -5.6955 19 1 -1.0664 -7.4239 -6.4719 20 6 -1.9323 -9.3154 -5.9932 21 7 -2.1675 -10.1986 -5.0476 22 14 -2.5097 -9.6405 -7.7396 23 1 -1.3388 -9.6589 -8.6529 24 1 -3.2014 -10.9534 -7.7960 25 1 -3.4475 -8.5681 -8.1587 26 1 -0.3635 0.0055 1.0275 27 1 -0.3633 0.8872 -0.5187 28 1 -0.3634 -0.8927 -0.5092 29 1 4.4891 -1.3486 0.0077 30 1 2.6653 -3.2086 0.3693 31 1 0.9988 -2.6634 0.6756 32 1 0.7785 -2.3431 -1.7234 33 1 1.8161 -5.0140 -1.0324 34 1 0.1498 -4.4681 -0.7263 35 1 -1.2232 -3.9222 -2.7266 36 1 0.9150 -6.8343 -2.4133 37 1 -0.7693 -6.2798 -2.2601 38 1 1.8279 -7.3284 -4.5644 39 1 0.9152 -6.9137 -6.0355 40 1 1.5853 -5.6223 -5.0104 41 1 -0.1054 -8.6737 -3.9785 42 1 -1.6536 -7.8735 -3.6163 43 1 -2.6407 -11.0191 -5.2571 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580887645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:34 Heat of formation + Delta-G solvation = -4.500674 kcal Electronic energy + Delta-G solvation = -21745.587249 eV Core-core repulsion = 18440.017627 eV Total energy + Delta-G solvation = -3305.569622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.13588 -39.55815 -37.47833 -36.13480 -34.60422 -33.73780 -32.12416 -30.55706 -28.99652 -28.79413 -27.54775 -25.92467 -24.23360 -22.57893 -21.95497 -21.70821 -20.38311 -18.64973 -18.54876 -17.41770 -17.16143 -16.67825 -16.28019 -16.00963 -15.74139 -15.49925 -15.21253 -14.98700 -14.71731 -14.34070 -13.87865 -13.71561 -13.66068 -13.60626 -13.20065 -13.15151 -12.98329 -12.82402 -12.59414 -12.52473 -12.44616 -12.35800 -11.97669 -11.58855 -11.40907 -11.39082 -10.69471 -10.60099 -10.29713 -9.56603 -9.14921 -8.92905 -8.19382 -6.29123 0.99757 1.41939 1.45156 1.53088 1.73047 2.07511 2.41503 3.09601 3.13549 3.58849 3.75222 3.79913 3.96214 4.09486 4.18252 4.32836 4.36750 4.46730 4.53086 4.56542 4.61251 4.75102 4.76083 4.78738 4.82310 4.88705 5.03441 5.05730 5.09323 5.19169 5.21825 5.24209 5.35831 5.66178 5.73591 6.06294 6.16211 6.34919 6.49527 6.52918 6.67139 6.76595 6.86836 7.01815 7.40468 8.91314 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.041375 B = 0.002521 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.571144 B =11104.705126 C =11196.160321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.071 3.929 3 N -0.338 5.338 4 N -0.475 5.475 5 H 0.451 0.549 6 C 0.084 3.916 7 C -0.253 4.253 8 C 0.142 3.858 9 N -0.687 5.687 10 C 0.039 3.961 11 C 0.128 3.872 12 H 0.092 0.908 13 O -0.562 6.562 14 C 0.025 3.975 15 N -0.541 5.541 16 C 0.040 3.960 17 C 0.208 3.792 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.001 3.999 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.269 1.269 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.208 0.792 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.344 0.656 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.379 0.621 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.012 0.988 39 H 0.053 0.947 40 H 0.075 0.925 41 H -0.039 1.039 42 H 0.005 0.995 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.951 18.320 13.593 25.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 N -0.163 5.163 4 N -0.183 5.183 5 H 0.297 0.703 6 C -0.065 4.065 7 C -0.265 4.265 8 C 0.013 3.987 9 N -0.319 5.319 10 C -0.092 4.092 11 C 0.068 3.932 12 H 0.110 0.890 13 O -0.367 6.367 14 C -0.104 4.104 15 N -0.265 5.265 16 C -0.108 4.108 17 C 0.082 3.918 18 C -0.562 4.562 19 H 0.078 0.922 20 C -0.197 4.197 21 N -0.575 5.575 22 Si 0.793 3.207 23 H -0.193 1.193 24 H -0.207 1.207 25 H -0.194 1.194 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.225 0.775 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.163 0.837 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.227 0.773 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.094 0.906 41 H -0.021 1.021 42 H 0.023 0.977 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.680 19.761 12.781 26.273 hybrid contribution -0.637 -1.859 0.445 2.015 sum 11.042 17.902 13.226 24.846 Atomic orbital electron populations 1.20258 0.85806 1.03688 1.03658 1.22663 0.97928 0.90565 0.98377 1.77207 0.88103 1.23638 1.27305 1.46233 1.06979 1.06056 1.59052 0.70283 1.22923 1.00030 0.85163 0.98335 1.20063 0.92578 0.95878 1.17973 1.20084 0.99690 0.90212 0.88729 1.60449 1.46920 1.02688 1.21886 1.22501 0.99929 0.90996 0.95732 1.21794 0.90044 0.86499 0.94865 0.89049 1.86576 1.26405 1.64612 1.59144 1.22840 1.00219 0.97233 0.90153 1.61936 1.22925 1.30726 1.10949 1.22221 0.90028 1.00020 0.98519 1.19389 0.91880 0.84188 0.96390 1.21448 1.35964 1.03487 0.95338 0.92177 1.25899 0.96111 0.95752 1.01893 1.70070 1.42555 1.10129 1.34743 0.85450 0.78675 0.77334 0.79250 1.19311 1.20718 1.19408 0.89458 0.90842 0.89985 0.77524 0.89658 0.94194 0.83688 0.89608 0.93839 0.77319 0.94796 0.91298 0.96988 0.92782 0.90626 1.02116 0.97727 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.26 71.23 0.73 -0.42 16 2 C 0.07 1.42 7.22 43.10 0.31 1.73 16 3 N -0.34 -7.36 12.70 -47.39 -0.60 -7.96 16 4 N -0.47 -7.16 7.36 -57.59 -0.42 -7.58 16 5 H 0.45 3.80 8.96 -213.33 -1.91 1.88 16 6 C 0.08 1.17 11.90 83.54 0.99 2.16 16 7 C -0.25 -4.43 5.61 -20.14 -0.11 -4.54 16 8 C 0.14 2.26 5.79 85.56 0.50 2.75 16 9 N -0.69 -13.30 6.49 -517.94 -3.36 -16.66 16 10 C 0.04 0.77 5.39 86.30 0.47 1.23 16 11 C 0.13 3.44 3.19 30.59 0.10 3.53 16 12 H 0.09 2.69 6.33 -2.39 -0.02 2.68 16 13 O -0.56 -16.08 12.62 -148.98 -1.88 -17.97 16 14 C 0.02 0.83 4.60 86.30 0.40 1.23 16 15 N -0.54 -23.61 4.70 -927.04 -4.36 -27.97 16 16 C 0.04 1.60 9.14 127.69 1.17 2.77 16 17 C 0.21 11.20 4.72 85.56 0.40 11.60 16 18 C -0.52 -30.26 8.46 25.60 0.22 -30.05 16 19 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 20 C 0.00 0.08 5.46 84.65 0.46 0.54 16 21 N -0.93 -56.54 13.29 21.44 0.28 -56.25 16 22 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.13 7.25 -2.38 -0.02 1.11 16 29 H 0.21 1.35 8.06 -2.91 -0.02 1.32 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.34 7.13 7.39 -89.69 -0.66 6.47 16 33 H 0.09 1.61 8.14 -2.38 -0.02 1.60 16 34 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.38 8.51 9.05 -74.06 -0.67 7.84 16 36 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 37 H 0.07 2.29 7.93 -2.39 -0.02 2.27 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.05 2.34 6.76 -2.39 -0.02 2.32 16 40 H 0.08 2.57 6.37 -2.38 -0.02 2.55 16 41 H -0.04 -2.26 8.12 -2.39 -0.02 -2.28 16 42 H 0.00 0.27 7.93 -2.39 -0.02 0.25 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -72.75 354.46 -4.90 -77.65 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -2.22 Total: 17.35 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 5.63 Total: -7.45 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -8.46 Total: -116.42 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -1.88 Total: -17.97 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -72.75 -4.90 -77.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580887645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.150 kcal (2) G-P(sol) polarization free energy of solvation -72.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds