Wall clock time and date at job start Tue Mar 31 2020 02:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.46899 * 2 1 4 4 C 1.46898 * 111.00255 * 198.90725 * 3 2 1 5 5 C 1.50696 * 109.47202 * 66.04335 * 4 3 2 6 6 O 1.21288 * 119.99980 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00357 * 180.02562 * 5 4 3 8 8 C 1.47423 * 125.64715 * 0.03998 * 7 5 4 9 9 C 1.54901 * 104.83447 * 204.09410 * 8 7 5 10 10 C 1.55166 * 101.58104 * 322.99487 * 9 8 7 11 11 O 1.42895 * 110.71710 * 277.13571 * 10 9 8 12 12 C 1.50703 * 110.71744 * 153.86358 * 10 9 8 13 13 H 1.07995 * 120.00169 * 246.47320 * 12 10 9 14 14 C 1.37877 * 119.99784 * 66.47938 * 12 10 9 15 15 N 1.31509 * 120.00548 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99546 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47397 * 59.99854 * 16 14 12 18 18 H 1.48503 * 109.46924 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47282 * 299.99623 * 16 14 12 20 20 C 1.47023 * 125.64764 * 180.02562 * 7 5 4 21 21 C 1.46901 * 110.99912 * 74.95624 * 3 2 1 22 22 C 1.53001 * 117.50016 * 3.06259 * 21 3 2 23 23 C 1.53002 * 117.49896 * 294.40375 * 21 3 2 24 24 H 1.09012 * 109.46876 * 173.75098 * 1 2 3 25 25 H 1.08996 * 109.47461 * 293.74831 * 1 2 3 26 26 H 1.09001 * 109.47461 * 53.75296 * 1 2 3 27 27 H 1.08998 * 109.47672 * 240.00283 * 2 1 3 28 28 H 1.09006 * 109.47293 * 119.99789 * 2 1 3 29 29 H 1.09007 * 109.47239 * 306.04640 * 4 3 2 30 30 H 1.08993 * 109.47825 * 186.04968 * 4 3 2 31 31 H 1.08995 * 110.36744 * 322.93780 * 8 7 5 32 32 H 1.09003 * 110.36413 * 85.14952 * 8 7 5 33 33 H 1.08993 * 111.01117 * 204.92029 * 9 8 7 34 34 H 1.09001 * 111.00200 * 81.06601 * 9 8 7 35 35 H 0.96704 * 113.99974 * 293.52171 * 11 10 9 36 36 H 0.97004 * 120.00370 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.88469 * 59.55679 * 20 7 5 38 38 H 1.08998 * 109.87962 * 298.38661 * 20 7 5 39 39 H 1.08999 * 115.55265 * 148.74116 * 21 3 2 40 40 H 1.09000 * 117.49398 * 0.02562 * 22 21 3 41 41 H 1.08998 * 117.49866 * 145.01967 * 22 21 3 42 42 H 1.08993 * 117.50179 * 214.97950 * 23 21 3 43 43 H 1.09005 * 117.49471 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4183 1.4490 -0.4444 5 6 3.5048 1.0381 -1.8917 6 8 2.5001 0.7235 -2.4939 7 7 4.6986 1.0203 -2.5170 8 6 5.9930 1.3762 -1.9077 9 6 6.8903 1.7948 -3.0989 10 6 6.4359 0.7971 -4.1970 11 8 7.1080 -0.4555 -4.0514 12 6 6.6693 1.3728 -5.5700 13 1 5.8292 1.6136 -6.2045 14 6 7.9554 1.5919 -6.0161 15 7 8.9784 1.2990 -5.2434 16 14 8.2446 2.3047 -7.7184 17 1 7.6001 3.6392 -7.8123 18 1 9.7041 2.4426 -7.9558 19 1 7.6598 1.3996 -8.7401 20 6 4.9257 0.6425 -3.9195 21 6 1.8594 2.0000 1.3244 22 6 1.3079 1.1216 2.4492 23 6 0.4334 2.2174 1.8346 24 1 -0.3633 -1.0217 -0.1119 25 1 -0.3634 0.4138 0.9406 26 1 -0.3634 0.6076 -0.8288 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.0233 0.7744 0.1616 30 1 3.7887 2.4680 -0.3332 31 1 5.8701 2.2083 -1.2146 32 1 6.4198 0.5150 -1.3935 33 1 7.9451 1.6592 -2.8602 34 1 6.6881 2.8234 -3.3977 35 1 8.0601 -0.4123 -4.2152 36 1 9.8832 1.4528 -5.5574 37 1 4.3584 1.3009 -4.5774 38 1 4.6241 -0.3929 -4.0780 39 1 2.6080 2.7464 1.5899 40 1 1.0643 0.0872 2.2065 41 1 1.6935 1.2902 3.4546 42 1 0.2441 3.1064 2.4360 43 1 -0.3859 1.9044 1.1873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:24 Heat of formation + Delta-G solvation = -31.131861 kcal Electronic energy + Delta-G solvation = -23073.810230 eV Core-core repulsion = 19734.793042 eV Total energy + Delta-G solvation = -3339.017188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.97707 -38.82455 -37.16495 -34.34772 -33.78586 -32.17694 -31.25847 -29.75592 -28.46638 -26.51686 -24.57239 -23.46611 -22.28721 -22.17625 -20.21285 -19.67609 -18.70757 -17.39025 -17.08994 -16.35414 -15.66895 -15.52428 -14.99020 -14.42875 -14.24564 -14.10838 -13.91384 -13.45263 -13.19521 -12.90577 -12.64020 -12.14159 -12.01549 -11.75063 -11.68662 -11.46780 -11.41111 -11.37477 -11.25659 -10.94447 -10.89448 -10.70029 -10.60415 -10.52782 -10.28958 -10.13926 -9.45339 -9.23600 -8.68771 -8.24374 -8.17385 -7.98870 -6.32036 -4.39232 3.07372 3.20657 3.23123 3.25487 3.30417 3.67382 4.04039 4.25233 4.67330 4.77817 4.87144 4.90022 4.97743 5.12945 5.18658 5.37232 5.44039 5.44721 5.54118 5.56715 5.67174 5.71139 5.75670 5.84446 5.89654 5.98743 6.03539 6.15371 6.20009 6.34307 6.44544 6.68566 6.87305 6.91704 6.99940 7.06223 7.27621 7.31373 7.71190 7.97973 8.11871 8.61985 8.67900 9.29159 9.42595 10.75771 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038272 B = 0.003550 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.423598 B = 7885.023693 C = 8037.136598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.042 3.958 3 N -0.489 5.489 4 C 0.043 3.957 5 C 0.522 3.478 6 O -0.536 6.536 7 N -0.610 5.610 8 C 0.095 3.905 9 C -0.137 4.137 10 C 0.248 3.752 11 O -0.587 6.587 12 C -0.536 4.536 13 H 0.065 0.935 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.124 3.876 21 C 0.022 3.978 22 C -0.223 4.223 23 C -0.179 4.179 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.386 0.614 36 H 0.270 0.730 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.449 1.139 13.950 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.085 4.085 3 N -0.211 5.211 4 C -0.087 4.087 5 C 0.309 3.691 6 O -0.414 6.414 7 N -0.344 5.344 8 C -0.027 4.027 9 C -0.176 4.176 10 C 0.208 3.792 11 O -0.397 6.397 12 C -0.574 4.574 13 H 0.083 0.917 14 C -0.130 4.130 15 N -0.538 5.538 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.003 3.997 21 C -0.088 4.088 22 C -0.261 4.261 23 C -0.217 4.217 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.238 0.762 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.728 1.027 13.441 16.624 hybrid contribution 1.462 0.263 -0.379 1.533 sum -8.267 1.290 13.062 15.512 Atomic orbital electron populations 1.22163 0.95026 1.01564 1.02863 1.22342 0.96590 0.88087 1.01465 1.61557 1.17728 1.19038 1.22748 1.21931 0.89977 1.02999 0.93835 1.19962 0.82193 0.78526 0.88407 1.90656 1.34461 1.48981 1.67280 1.48653 1.06396 1.65835 1.13536 1.22484 0.84036 0.98746 0.97462 1.23315 0.99127 1.00773 0.94349 1.19427 0.85698 0.81489 0.92624 1.86096 1.27077 1.33216 1.93343 1.21521 0.92885 1.42540 1.00439 0.91722 1.24986 0.95767 0.94311 0.97934 1.69560 0.98999 1.48496 1.36794 0.86451 0.77080 0.79660 0.83670 1.20030 1.21093 1.19958 1.22059 0.97966 0.99693 0.80017 1.22655 0.97919 1.00958 0.87226 1.23636 1.06341 0.97821 0.98336 1.23428 0.94990 1.00006 1.03242 0.92783 0.91598 0.91440 0.89287 0.94472 0.92013 0.88009 0.92278 0.91973 0.89666 0.91413 0.76197 0.92028 0.91049 0.92193 0.86655 0.87631 0.89018 0.88870 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 8.75 37.15 0.32 -1.55 16 2 C 0.04 0.57 4.77 -3.83 -0.02 0.55 16 3 N -0.49 -6.70 4.41 -228.09 -1.00 -7.70 16 4 C 0.04 0.61 4.41 -4.98 -0.02 0.59 16 5 C 0.52 9.68 7.37 -10.99 -0.08 9.59 16 6 O -0.54 -11.59 14.86 5.55 0.08 -11.50 16 7 N -0.61 -11.89 3.33 -170.53 -0.57 -12.46 16 8 C 0.10 1.67 6.68 -2.53 -0.02 1.65 16 9 C -0.14 -2.88 5.67 -24.58 -0.14 -3.02 16 10 C 0.25 5.92 0.86 -89.93 -0.08 5.84 16 11 O -0.59 -14.68 13.09 -35.23 -0.46 -15.14 16 12 C -0.54 -13.90 8.21 -34.44 -0.28 -14.18 16 13 H 0.06 1.68 7.53 -52.49 -0.40 1.29 16 14 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 15 N -0.90 -22.78 10.70 55.43 0.59 -22.18 16 16 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.12 2.80 6.22 -3.07 -0.02 2.78 16 21 C 0.02 0.24 6.10 -67.71 -0.41 -0.18 16 22 C -0.22 -2.05 9.03 -26.69 -0.24 -2.29 16 23 C -0.18 -1.70 9.55 -26.69 -0.26 -1.95 16 24 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.07 0.67 3.88 -51.93 -0.20 0.47 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.09 1.45 5.84 -51.93 -0.30 1.15 16 28 H 0.04 0.45 6.08 -51.93 -0.32 0.13 16 29 H 0.06 0.78 8.12 -51.92 -0.42 0.36 16 30 H 0.10 1.26 7.66 -51.93 -0.40 0.86 16 31 H 0.06 0.85 7.48 -51.93 -0.39 0.46 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.86 7.77 -51.93 -0.40 1.45 16 34 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 35 H 0.39 9.72 6.99 45.56 0.32 10.04 16 36 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 37 H 0.07 1.65 7.63 -51.93 -0.40 1.25 16 38 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 39 H 0.12 1.10 7.89 -51.93 -0.41 0.69 16 40 H 0.11 1.01 4.91 -51.93 -0.26 0.75 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.11 1.11 5.40 -51.93 -0.28 0.83 16 LS Contribution 332.47 15.07 5.01 5.01 Total: -1.00 -28.10 332.47 -8.64 -36.74 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -5.94 Total: 12.58 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.34 Total: -0.41 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.98 Total: -42.35 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.38 Total: -26.64 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.10 -8.64 -36.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.612 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds