Wall clock time and date at job start Tue Mar 31 2020 02:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.46899 * 2 1 4 4 C 1.46898 * 111.00255 * 198.90725 * 3 2 1 5 5 C 1.50696 * 109.47202 * 66.04335 * 4 3 2 6 6 O 1.21288 * 119.99980 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00357 * 180.02562 * 5 4 3 8 8 C 1.47423 * 125.64715 * 0.03998 * 7 5 4 9 9 C 1.54901 * 104.83447 * 204.09410 * 8 7 5 10 10 C 1.55166 * 101.58104 * 322.99487 * 9 8 7 11 11 O 1.42895 * 110.71710 * 277.13571 * 10 9 8 12 12 C 1.50703 * 110.71744 * 153.86358 * 10 9 8 13 13 H 1.07995 * 120.00169 * 246.47320 * 12 10 9 14 14 C 1.37877 * 119.99784 * 66.47938 * 12 10 9 15 15 N 1.31509 * 120.00548 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99546 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47397 * 59.99854 * 16 14 12 18 18 H 1.48503 * 109.46924 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47282 * 299.99623 * 16 14 12 20 20 C 1.47023 * 125.64764 * 180.02562 * 7 5 4 21 21 C 1.46901 * 110.99912 * 74.95624 * 3 2 1 22 22 C 1.53001 * 117.50016 * 3.06259 * 21 3 2 23 23 C 1.53002 * 117.49896 * 294.40375 * 21 3 2 24 24 H 1.09012 * 109.46876 * 173.75098 * 1 2 3 25 25 H 1.08996 * 109.47461 * 293.74831 * 1 2 3 26 26 H 1.09001 * 109.47461 * 53.75296 * 1 2 3 27 27 H 1.08998 * 109.47672 * 240.00283 * 2 1 3 28 28 H 1.09006 * 109.47293 * 119.99789 * 2 1 3 29 29 H 1.09007 * 109.47239 * 306.04640 * 4 3 2 30 30 H 1.08993 * 109.47825 * 186.04968 * 4 3 2 31 31 H 1.08995 * 110.36744 * 322.93780 * 8 7 5 32 32 H 1.09003 * 110.36413 * 85.14952 * 8 7 5 33 33 H 1.08993 * 111.01117 * 204.92029 * 9 8 7 34 34 H 1.09001 * 111.00200 * 81.06601 * 9 8 7 35 35 H 0.96704 * 113.99974 * 293.52171 * 11 10 9 36 36 H 0.97004 * 120.00370 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.88469 * 59.55679 * 20 7 5 38 38 H 1.08998 * 109.87962 * 298.38661 * 20 7 5 39 39 H 1.08999 * 115.55265 * 148.74116 * 21 3 2 40 40 H 1.09000 * 117.49398 * 0.02562 * 22 21 3 41 41 H 1.08998 * 117.49866 * 145.01967 * 22 21 3 42 42 H 1.08993 * 117.50179 * 214.97950 * 23 21 3 43 43 H 1.09005 * 117.49471 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4183 1.4490 -0.4444 5 6 3.5048 1.0381 -1.8917 6 8 2.5001 0.7235 -2.4939 7 7 4.6986 1.0203 -2.5170 8 6 5.9930 1.3762 -1.9077 9 6 6.8903 1.7948 -3.0989 10 6 6.4359 0.7971 -4.1970 11 8 7.1080 -0.4555 -4.0514 12 6 6.6693 1.3728 -5.5700 13 1 5.8292 1.6136 -6.2045 14 6 7.9554 1.5919 -6.0161 15 7 8.9784 1.2990 -5.2434 16 14 8.2446 2.3047 -7.7184 17 1 7.6001 3.6392 -7.8123 18 1 9.7041 2.4426 -7.9558 19 1 7.6598 1.3996 -8.7401 20 6 4.9257 0.6425 -3.9195 21 6 1.8594 2.0000 1.3244 22 6 1.3079 1.1216 2.4492 23 6 0.4334 2.2174 1.8346 24 1 -0.3633 -1.0217 -0.1119 25 1 -0.3634 0.4138 0.9406 26 1 -0.3634 0.6076 -0.8288 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.0233 0.7744 0.1616 30 1 3.7887 2.4680 -0.3332 31 1 5.8701 2.2083 -1.2146 32 1 6.4198 0.5150 -1.3935 33 1 7.9451 1.6592 -2.8602 34 1 6.6881 2.8234 -3.3977 35 1 8.0601 -0.4123 -4.2152 36 1 9.8832 1.4528 -5.5574 37 1 4.3584 1.3009 -4.5774 38 1 4.6241 -0.3929 -4.0780 39 1 2.6080 2.7464 1.5899 40 1 1.0643 0.0872 2.2065 41 1 1.6935 1.2902 3.4546 42 1 0.2441 3.1064 2.4360 43 1 -0.3859 1.9044 1.1873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:23 Heat of formation + Delta-G solvation = -50.944768 kcal Electronic energy + Delta-G solvation = -23074.669382 eV Core-core repulsion = 19734.793042 eV Total energy + Delta-G solvation = -3339.876341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.29048 -40.03362 -38.75937 -36.11171 -34.74896 -34.15675 -32.36783 -31.35363 -30.12629 -27.98257 -26.21117 -24.35428 -23.81068 -22.96266 -21.61501 -20.96564 -20.19116 -19.20673 -18.32612 -17.58201 -17.01308 -16.89738 -16.85242 -16.04219 -15.62965 -15.52859 -14.95589 -14.67680 -14.65033 -14.09263 -13.96167 -13.79668 -13.46646 -13.26560 -13.23947 -13.11491 -12.65996 -12.61162 -12.48650 -12.41280 -12.28745 -12.23235 -11.99577 -11.78132 -11.53402 -11.29283 -11.10669 -10.75382 -10.59423 -10.14577 -9.60285 -9.09230 -8.26406 -6.40450 1.42649 1.44392 1.51498 1.63790 1.91601 2.38927 2.73580 2.99037 3.13806 3.54289 3.87101 3.94363 3.99802 4.02855 4.11473 4.17352 4.19675 4.29960 4.37627 4.42277 4.50012 4.58358 4.60658 4.67100 4.73389 4.85026 4.92351 4.94495 5.00613 5.17989 5.19272 5.26224 5.32204 5.41918 5.46207 5.52292 5.75814 5.96594 6.05651 6.14132 6.59388 6.66689 7.19408 7.30558 7.44159 8.79774 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038272 B = 0.003550 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.423598 B = 7885.023693 C = 8037.136598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.044 3.956 3 N -0.509 5.509 4 C 0.054 3.946 5 C 0.516 3.484 6 O -0.574 6.574 7 N -0.614 5.614 8 C 0.105 3.895 9 C -0.128 4.128 10 C 0.235 3.765 11 O -0.595 6.595 12 C -0.566 4.566 13 H 0.051 0.949 14 C 0.038 3.962 15 N -0.907 5.907 16 Si 0.959 3.041 17 H -0.273 1.273 18 H -0.276 1.276 19 H -0.279 1.279 20 C 0.131 3.869 21 C 0.006 3.994 22 C -0.210 4.210 23 C -0.179 4.179 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.383 0.617 36 H 0.273 0.727 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.133 0.867 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 2.211 16.265 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.083 4.083 3 N -0.232 5.232 4 C -0.076 4.076 5 C 0.306 3.694 6 O -0.454 6.454 7 N -0.348 5.348 8 C -0.017 4.017 9 C -0.167 4.167 10 C 0.195 3.805 11 O -0.405 6.405 12 C -0.604 4.604 13 H 0.069 0.931 14 C -0.163 4.163 15 N -0.546 5.546 16 Si 0.785 3.215 17 H -0.198 1.198 18 H -0.201 1.201 19 H -0.204 1.204 20 C 0.008 3.992 21 C -0.102 4.102 22 C -0.249 4.249 23 C -0.216 4.216 24 H 0.080 0.920 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.145 0.855 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.151 0.849 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.550 2.106 15.790 18.574 hybrid contribution 1.365 -0.102 -1.116 1.766 sum -8.185 2.004 14.674 16.922 Atomic orbital electron populations 1.22125 0.94157 1.01802 1.02921 1.22274 0.97342 0.88277 1.00445 1.61523 1.17490 1.19106 1.25090 1.21909 0.90985 1.04597 0.90142 1.20926 0.81023 0.77268 0.90175 1.90639 1.35703 1.50431 1.68619 1.48724 1.07705 1.66094 1.12251 1.22519 0.82108 1.00653 0.96412 1.23097 0.99370 0.99387 0.94850 1.19575 0.86280 0.81626 0.92995 1.86081 1.26850 1.34206 1.93373 1.21741 0.93046 1.43843 1.01758 0.93088 1.25575 0.95457 0.94440 1.00838 1.69610 0.99155 1.48179 1.37676 0.85598 0.77237 0.78821 0.79879 1.19812 1.20106 1.20419 1.21738 0.97087 0.98131 0.82233 1.22804 0.99240 1.01943 0.86232 1.23654 1.05320 0.97312 0.98587 1.23480 0.94064 1.00958 1.03104 0.91980 0.89633 0.93743 0.92841 0.92780 0.89922 0.85547 0.87884 0.91006 0.90446 0.92214 0.76590 0.91695 0.92622 0.94255 0.84926 0.88112 0.87192 0.87129 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.75 71.98 0.63 -2.87 16 2 C 0.04 1.14 4.77 86.30 0.41 1.55 16 3 N -0.51 -13.00 4.41 -875.53 -3.86 -16.86 16 4 C 0.05 1.38 4.41 85.56 0.38 1.76 16 5 C 0.52 18.86 7.37 87.66 0.65 19.50 16 6 O -0.57 -25.41 14.86 -3.05 -0.05 -25.46 16 7 N -0.61 -23.64 3.33 -811.82 -2.70 -26.34 16 8 C 0.10 3.45 6.68 86.85 0.58 4.03 16 9 C -0.13 -5.32 5.67 31.99 0.18 -5.14 16 10 C 0.24 11.44 0.86 -10.35 -0.01 11.43 16 11 O -0.59 -30.29 13.09 -148.98 -1.95 -32.24 16 12 C -0.57 -30.04 8.21 25.60 0.21 -29.83 16 13 H 0.05 2.76 7.53 -2.91 -0.02 2.74 16 14 C 0.04 1.95 5.28 84.66 0.45 2.39 16 15 N -0.91 -45.81 10.70 21.45 0.23 -45.58 16 16 Si 0.96 41.21 29.54 68.60 2.03 43.23 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 18 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 C 0.13 6.10 6.22 86.73 0.54 6.64 16 21 C 0.01 0.12 6.10 44.92 0.27 0.39 16 22 C -0.21 -3.13 9.03 30.62 0.28 -2.85 16 23 C -0.18 -2.86 9.55 30.62 0.29 -2.57 16 24 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.09 1.59 3.88 -2.39 -0.01 1.58 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 1.77 5.84 -2.39 -0.01 1.75 16 28 H 0.05 1.19 6.08 -2.38 -0.01 1.18 16 29 H 0.08 1.80 8.12 -2.38 -0.02 1.78 16 30 H 0.13 2.61 7.66 -2.39 -0.02 2.60 16 31 H 0.10 2.53 7.48 -2.39 -0.02 2.51 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.08 3.32 7.77 -2.39 -0.02 3.30 16 34 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16 35 H 0.38 19.59 6.99 -74.05 -0.52 19.07 16 36 H 0.27 13.14 8.31 -92.71 -0.77 12.36 16 37 H 0.06 2.70 7.63 -2.39 -0.02 2.69 16 38 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 39 H 0.13 1.96 7.89 -2.39 -0.02 1.94 16 40 H 0.10 1.61 4.91 -2.39 -0.01 1.60 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 1.82 5.40 -2.38 -0.01 1.80 16 Total: -1.00 -62.16 332.47 -0.94 -63.09 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.50 Total: 35.73 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 4.86 Total: 4.42 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -6.33 Total: -88.77 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -2.00 Total: -57.70 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -62.16 -0.94 -63.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.149 kcal (2) G-P(sol) polarization free energy of solvation -62.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds