Wall clock time and date at job start Tue Mar 31 2020 02:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 O 1.21279 * 120.00072 * 119.99863 * 4 2 1 6 6 N 1.34777 * 119.99762 * 300.00068 * 4 2 1 7 7 C 1.46496 * 120.00258 * 180.02562 * 6 4 2 8 8 C 1.52993 * 109.47551 * 179.97438 * 7 6 4 9 9 C 1.53005 * 109.46914 * 299.99536 * 8 7 6 10 10 C 1.53002 * 109.47392 * 59.99666 * 8 7 6 11 11 C 1.50696 * 109.47429 * 179.97438 * 8 7 6 12 12 H 1.07999 * 119.99822 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00339 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99769 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00300 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47057 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47389 * 120.00056 * 15 13 11 18 18 H 1.48508 * 109.47034 * 240.00048 * 15 13 11 19 19 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 20 20 H 1.09003 * 110.22127 * 186.93137 * 19 2 1 21 21 C 1.54481 * 110.24526 * 64.99867 * 19 2 1 22 22 C 1.54628 * 101.76778 * 215.58632 * 21 19 2 23 23 C 1.51275 * 104.19579 * 24.79874 * 22 21 19 24 24 O 1.21279 * 124.94286 * 163.71027 * 23 22 21 25 25 N 1.34420 * 110.11491 * 343.74857 * 23 22 21 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 30 30 H 1.09004 * 109.46875 * 299.99676 * 7 6 4 31 31 H 1.09000 * 109.47024 * 59.99522 * 7 6 4 32 32 H 1.09002 * 109.46935 * 60.00150 * 9 8 7 33 33 H 1.08998 * 109.47061 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47360 * 300.00175 * 9 8 7 35 35 H 1.08996 * 109.46698 * 60.00223 * 10 8 7 36 36 H 1.09001 * 109.47142 * 180.02562 * 10 8 7 37 37 H 1.09002 * 109.47097 * 300.00241 * 10 8 7 38 38 H 0.97005 * 120.00032 * 179.97438 * 14 13 11 39 39 H 1.09006 * 110.97139 * 333.71176 * 21 19 2 40 40 H 1.09000 * 110.96941 * 97.42643 * 21 19 2 41 41 H 1.09004 * 110.48047 * 143.48098 * 22 21 19 42 42 H 1.08999 * 110.48529 * 266.12005 * 22 21 19 43 43 H 0.97006 * 124.34869 * 179.59680 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9402 3.6508 8 6 1.6859 -0.2187 4.9000 9 6 2.1960 1.2238 4.8994 10 6 0.1559 -0.2187 4.9005 11 6 2.1882 -0.9291 6.1304 12 1 2.8092 -1.8072 6.0313 13 6 1.8559 -0.4575 7.3827 14 7 1.1001 0.6120 7.5033 15 14 2.4791 -1.3377 8.9079 16 1 3.3041 -2.5044 8.5038 17 1 3.3047 -0.4043 9.7155 18 1 1.3243 -1.8038 9.7170 19 6 2.0400 -0.7213 -1.2492 20 1 3.1229 -0.8366 -1.2019 21 6 1.6407 0.0621 -2.5193 22 6 1.3613 -1.0823 -3.5209 23 6 1.0069 -2.2637 -2.6449 24 8 0.4541 -3.2724 -3.0293 25 7 1.3931 -2.0323 -1.3784 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.1494 0.5389 2.5436 30 1 1.8325 -1.9680 3.6509 31 1 3.2855 -0.9398 3.6506 32 1 1.8323 1.7374 4.0095 33 1 1.8326 1.7380 5.7892 34 1 3.2860 1.2238 4.8990 35 1 -0.2073 -1.2464 4.9009 36 1 -0.2071 0.2957 5.7903 37 1 -0.2078 0.2949 4.0106 38 1 0.8660 0.9436 8.3844 39 1 0.7434 0.6561 -2.3453 40 1 2.4615 0.6911 -2.8639 41 1 0.5249 -0.8247 -4.1708 42 1 2.2517 -1.2986 -4.1111 43 1 1.2613 -2.6523 -0.6441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600000965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:20 Heat of formation + Delta-G solvation = -91.395568 kcal Electronic energy + Delta-G solvation = -22953.685455 eV Core-core repulsion = 19612.055036 eV Total energy + Delta-G solvation = -3341.630419 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.84980 -39.25262 -36.98803 -36.23722 -33.61589 -32.73954 -31.41373 -30.76874 -27.21353 -25.91318 -25.79296 -25.22986 -23.86590 -21.39220 -20.68497 -19.70891 -18.86103 -17.10607 -17.04691 -16.73422 -15.85321 -15.39456 -15.08409 -14.74828 -14.68314 -13.99377 -13.80399 -13.68223 -13.45012 -12.97380 -12.90102 -12.78622 -12.36074 -12.29206 -12.00866 -11.68884 -11.41735 -11.35874 -11.25844 -11.10441 -10.92287 -10.70444 -10.45427 -10.25024 -9.93460 -9.70396 -9.61619 -9.29419 -9.12257 -8.83678 -8.53189 -8.38605 -6.07235 -4.17357 2.54446 2.89986 3.23915 3.32790 3.34537 3.36908 3.54801 4.16913 4.20450 4.36054 4.46181 4.73762 4.84526 4.91277 4.98823 5.19872 5.25450 5.39008 5.43001 5.46523 5.61419 5.71283 5.82426 6.02845 6.15878 6.25362 6.43659 6.69489 6.74854 6.76678 6.85638 6.93965 6.94856 7.04778 7.28591 7.49222 7.64446 7.94808 7.94842 8.08562 8.21795 8.32604 8.57247 8.83573 9.48959 10.94176 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037284 B = 0.003420 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.809181 B = 8186.295974 C = 8418.011516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 H 0.110 0.890 4 C 0.505 3.495 5 O -0.552 6.552 6 N -0.712 5.712 7 C 0.131 3.869 8 C 0.055 3.945 9 C -0.130 4.130 10 C -0.130 4.130 11 C -0.506 4.506 12 H 0.058 0.942 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.151 3.849 20 H 0.091 0.909 21 C -0.132 4.132 22 C -0.155 4.155 23 C 0.516 3.484 24 O -0.544 6.544 25 N -0.712 5.712 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.398 0.602 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.005 0.995 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.085 0.915 37 H 0.005 0.995 38 H 0.259 0.741 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 5.059 -16.810 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 H 0.128 0.872 4 C 0.290 3.710 5 O -0.431 6.431 6 N -0.362 5.362 7 C 0.009 3.991 8 C 0.055 3.945 9 C -0.188 4.188 10 C -0.188 4.188 11 C -0.545 4.545 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.524 5.524 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.045 3.955 20 H 0.109 0.891 21 C -0.170 4.170 22 C -0.196 4.196 23 C 0.301 3.699 24 O -0.422 6.422 25 N -0.367 5.367 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.234 0.766 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.024 0.976 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.487 4.010 -16.993 17.467 hybrid contribution 0.095 -0.221 1.415 1.435 sum -0.391 3.789 -15.578 16.037 Atomic orbital electron populations 1.21796 0.92451 1.03222 1.02779 1.21695 0.98314 1.01304 0.93270 0.87198 1.20442 0.80664 0.84955 0.84900 1.90685 1.38775 1.26731 1.86940 1.46328 1.52187 1.31647 1.06034 1.21734 0.98145 0.95810 0.83455 1.18361 0.92801 0.92753 0.90604 1.21829 0.98568 0.98338 1.00074 1.21827 0.97737 0.99168 1.00054 1.21019 1.31485 1.12099 0.89885 0.92405 1.24878 0.94831 0.94909 0.98886 1.69808 1.36701 1.22749 1.23169 0.86519 0.78671 0.79764 0.82960 1.19752 1.21039 1.21030 1.21453 0.98073 0.82480 0.93520 0.89110 1.22794 1.03483 0.97251 0.93500 1.22337 1.04427 0.94230 0.98575 1.20864 0.77319 0.88040 0.83627 1.90748 1.43254 1.30902 1.77312 1.46315 1.59559 1.20029 1.10796 0.91365 0.91531 0.91856 0.76647 0.92714 0.92684 0.97558 0.89571 0.95446 0.95460 0.89584 0.97574 0.93034 0.89370 0.88972 0.88163 0.87888 0.74457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.65 37.16 0.32 -1.00 16 2 C -0.12 -1.22 2.58 -91.77 -0.24 -1.46 16 3 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.51 7.48 6.98 -10.98 -0.08 7.41 16 5 O -0.55 -10.10 15.04 5.56 0.08 -10.01 16 6 N -0.71 -11.37 4.85 -60.30 -0.29 -11.66 16 7 C 0.13 2.63 4.50 -4.05 -0.02 2.62 16 8 C 0.06 1.23 0.50 -155.66 -0.08 1.16 16 9 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 10 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 11 C -0.51 -12.96 8.01 -34.44 -0.28 -13.24 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 14 N -0.89 -23.10 9.35 55.43 0.52 -22.58 16 15 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.15 1.43 2.72 -67.01 -0.18 1.25 16 20 H 0.09 0.93 7.91 -51.93 -0.41 0.52 16 21 C -0.13 -0.82 6.53 -25.10 -0.16 -0.98 16 22 C -0.16 -1.20 6.86 -26.74 -0.18 -1.39 16 23 C 0.52 6.45 8.43 -10.86 -0.09 6.36 16 24 O -0.54 -9.23 18.03 5.56 0.10 -9.13 16 25 N -0.71 -8.49 4.54 -52.76 -0.24 -8.73 16 26 H 0.07 0.48 6.37 -51.93 -0.33 0.15 16 27 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 28 H 0.06 0.68 7.43 -51.93 -0.39 0.30 16 29 H 0.40 5.72 5.58 -40.82 -0.23 5.49 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 33 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 37 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 38 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 39 H 0.09 0.46 6.12 -51.93 -0.32 0.14 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.42 5.71 8.12 -40.82 -0.33 5.37 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -30.27 335.89 -6.93 -37.20 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.66 Total: 7.13 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.48 Total: -2.68 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.01 Total: -42.97 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.18 Total: -19.14 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.27 -6.93 -37.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600000965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.196 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds