Wall clock time and date at job start Tue Mar 31 2020 02:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 O 1.21279 * 120.00072 * 119.99863 * 4 2 1 6 6 N 1.34777 * 119.99762 * 300.00068 * 4 2 1 7 7 C 1.46496 * 120.00258 * 180.02562 * 6 4 2 8 8 C 1.52993 * 109.47551 * 179.97438 * 7 6 4 9 9 C 1.53005 * 109.46914 * 299.99536 * 8 7 6 10 10 C 1.53002 * 109.47392 * 59.99666 * 8 7 6 11 11 C 1.50696 * 109.47429 * 179.97438 * 8 7 6 12 12 H 1.07999 * 119.99822 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00339 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99769 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00300 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47057 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47389 * 120.00056 * 15 13 11 18 18 H 1.48508 * 109.47034 * 240.00048 * 15 13 11 19 19 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 20 20 H 1.09003 * 110.22127 * 186.93137 * 19 2 1 21 21 C 1.54481 * 110.24526 * 64.99867 * 19 2 1 22 22 C 1.54628 * 101.76778 * 215.58632 * 21 19 2 23 23 C 1.51275 * 104.19579 * 24.79874 * 22 21 19 24 24 O 1.21279 * 124.94286 * 163.71027 * 23 22 21 25 25 N 1.34420 * 110.11491 * 343.74857 * 23 22 21 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 30 30 H 1.09004 * 109.46875 * 299.99676 * 7 6 4 31 31 H 1.09000 * 109.47024 * 59.99522 * 7 6 4 32 32 H 1.09002 * 109.46935 * 60.00150 * 9 8 7 33 33 H 1.08998 * 109.47061 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47360 * 300.00175 * 9 8 7 35 35 H 1.08996 * 109.46698 * 60.00223 * 10 8 7 36 36 H 1.09001 * 109.47142 * 180.02562 * 10 8 7 37 37 H 1.09002 * 109.47097 * 300.00241 * 10 8 7 38 38 H 0.97005 * 120.00032 * 179.97438 * 14 13 11 39 39 H 1.09006 * 110.97139 * 333.71176 * 21 19 2 40 40 H 1.09000 * 110.96941 * 97.42643 * 21 19 2 41 41 H 1.09004 * 110.48047 * 143.48098 * 22 21 19 42 42 H 1.08999 * 110.48529 * 266.12005 * 22 21 19 43 43 H 0.97006 * 124.34869 * 179.59680 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9402 3.6508 8 6 1.6859 -0.2187 4.9000 9 6 2.1960 1.2238 4.8994 10 6 0.1559 -0.2187 4.9005 11 6 2.1882 -0.9291 6.1304 12 1 2.8092 -1.8072 6.0313 13 6 1.8559 -0.4575 7.3827 14 7 1.1001 0.6120 7.5033 15 14 2.4791 -1.3377 8.9079 16 1 3.3041 -2.5044 8.5038 17 1 3.3047 -0.4043 9.7155 18 1 1.3243 -1.8038 9.7170 19 6 2.0400 -0.7213 -1.2492 20 1 3.1229 -0.8366 -1.2019 21 6 1.6407 0.0621 -2.5193 22 6 1.3613 -1.0823 -3.5209 23 6 1.0069 -2.2637 -2.6449 24 8 0.4541 -3.2724 -3.0293 25 7 1.3931 -2.0323 -1.3784 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.1494 0.5389 2.5436 30 1 1.8325 -1.9680 3.6509 31 1 3.2855 -0.9398 3.6506 32 1 1.8323 1.7374 4.0095 33 1 1.8326 1.7380 5.7892 34 1 3.2860 1.2238 4.8990 35 1 -0.2073 -1.2464 4.9009 36 1 -0.2071 0.2957 5.7903 37 1 -0.2078 0.2949 4.0106 38 1 0.8660 0.9436 8.3844 39 1 0.7434 0.6561 -2.3453 40 1 2.4615 0.6911 -2.8639 41 1 0.5249 -0.8247 -4.1708 42 1 2.2517 -1.2986 -4.1111 43 1 1.2613 -2.6523 -0.6441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600000965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:19 Heat of formation + Delta-G solvation = -112.386128 kcal Electronic energy + Delta-G solvation = -22954.595674 eV Core-core repulsion = 19612.055036 eV Total energy + Delta-G solvation = -3342.540638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77537 -40.45624 -38.33236 -37.56941 -35.07961 -33.89280 -32.44934 -32.11139 -27.99829 -27.55938 -27.50275 -26.94669 -24.87364 -22.30393 -21.54953 -20.80740 -20.58123 -18.30220 -18.02863 -17.72083 -17.49482 -16.69978 -16.53199 -16.21146 -15.72780 -15.10477 -14.99690 -14.82440 -14.59317 -14.36644 -14.17723 -14.00210 -13.41426 -13.21883 -13.17509 -13.05962 -12.76171 -12.69091 -12.58887 -12.43863 -12.24499 -12.14883 -12.07137 -11.71635 -11.48561 -11.25717 -10.91041 -10.75523 -10.60029 -10.40797 -10.06306 -9.90706 -8.03849 -6.19215 1.39466 1.44246 1.53002 1.61466 1.72294 2.32211 2.47166 2.49319 3.19903 3.43528 3.49692 3.79998 3.90958 4.10236 4.30134 4.33374 4.40515 4.50553 4.53377 4.71932 4.79019 4.85331 4.90301 4.93243 5.00896 5.06161 5.11066 5.18765 5.19680 5.21561 5.37975 5.39358 5.60990 5.66607 5.67705 5.84218 6.13649 6.16013 6.22204 6.43258 6.70477 6.85493 7.24333 7.35767 7.48761 8.94881 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037284 B = 0.003420 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.809181 B = 8186.295974 C = 8418.011516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 H 0.149 0.851 4 C 0.502 3.498 5 O -0.591 6.591 6 N -0.708 5.708 7 C 0.148 3.852 8 C 0.051 3.949 9 C -0.120 4.120 10 C -0.119 4.119 11 C -0.529 4.529 12 H 0.041 0.959 13 C 0.030 3.970 14 N -0.897 5.897 15 Si 0.942 3.058 16 H -0.277 1.277 17 H -0.280 1.280 18 H -0.282 1.282 19 C 0.144 3.856 20 H 0.082 0.918 21 C -0.115 4.115 22 C -0.146 4.146 23 C 0.503 3.497 24 O -0.601 6.601 25 N -0.717 5.717 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.409 0.591 30 H 0.032 0.968 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.061 0.939 37 H 0.039 0.961 38 H 0.260 0.740 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 7.499 -18.639 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 H 0.166 0.834 4 C 0.289 3.711 5 O -0.472 6.472 6 N -0.359 5.359 7 C 0.024 3.976 8 C 0.050 3.950 9 C -0.177 4.177 10 C -0.177 4.177 11 C -0.568 4.568 12 H 0.060 0.940 13 C -0.170 4.170 14 N -0.536 5.536 15 Si 0.769 3.231 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.208 1.208 19 C 0.038 3.962 20 H 0.100 0.900 21 C -0.153 4.153 22 C -0.186 4.186 23 C 0.291 3.709 24 O -0.484 6.484 25 N -0.369 5.369 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.247 0.753 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.656 6.508 -18.828 19.932 hybrid contribution 0.178 -1.027 2.002 2.257 sum -0.478 5.481 -16.826 17.703 Atomic orbital electron populations 1.21825 0.91477 1.02242 1.04548 1.21742 0.98817 1.02374 0.90196 0.83364 1.21414 0.79495 0.84433 0.85722 1.90675 1.40445 1.28585 1.87490 1.46143 1.52571 1.31859 1.05332 1.21204 0.96897 0.94864 0.84603 1.18356 0.93190 0.93169 0.90284 1.21656 0.97900 0.97638 1.00538 1.21659 0.97147 0.98447 1.00471 1.21316 1.31635 1.12074 0.91766 0.94038 1.25417 0.95172 0.95589 1.00863 1.69904 1.36985 1.23210 1.23518 0.85754 0.78135 0.78756 0.80432 1.20197 1.20613 1.20800 1.21697 0.97477 0.81754 0.95230 0.89978 1.22865 1.05519 0.96472 0.90422 1.22387 1.05618 0.92256 0.98312 1.21791 0.76165 0.88631 0.84266 1.90706 1.45864 1.33500 1.78282 1.46562 1.59084 1.20825 1.10386 0.88270 0.91129 0.94246 0.75349 0.94926 0.94448 0.94023 0.92037 0.96323 0.96703 0.92001 0.94168 0.93035 0.87425 0.85760 0.86505 0.86387 0.76262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.65 71.98 0.62 -1.49 16 2 C -0.11 -1.79 2.58 -11.54 -0.03 -1.82 16 3 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 4 C 0.50 14.18 6.98 87.66 0.61 14.79 16 5 O -0.59 -21.73 15.04 -3.03 -0.05 -21.77 16 6 N -0.71 -21.58 4.85 -463.07 -2.25 -23.83 16 7 C 0.15 6.02 4.50 86.38 0.39 6.41 16 8 C 0.05 2.25 0.50 -52.93 -0.03 2.23 16 9 C -0.12 -5.03 8.08 71.98 0.58 -4.45 16 10 C -0.12 -5.11 8.08 71.98 0.58 -4.53 16 11 C -0.53 -27.63 8.01 25.60 0.21 -27.43 16 12 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 13 C 0.03 1.53 5.15 84.65 0.44 1.97 16 14 N -0.90 -46.99 9.35 21.45 0.20 -46.79 16 15 Si 0.94 42.29 29.54 68.60 2.03 44.32 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 C 0.14 2.32 2.72 45.44 0.12 2.44 16 20 H 0.08 1.51 7.91 -2.39 -0.02 1.49 16 21 C -0.12 -0.85 6.53 31.65 0.21 -0.65 16 22 C -0.15 -1.78 6.86 30.59 0.21 -1.57 16 23 C 0.50 12.24 8.43 87.90 0.74 12.98 16 24 O -0.60 -20.91 18.03 -3.03 -0.05 -20.96 16 25 N -0.72 -16.69 4.54 -439.44 -1.99 -18.69 16 26 H 0.10 0.89 6.37 -2.39 -0.02 0.87 16 27 H 0.07 1.01 7.56 -2.39 -0.02 0.99 16 28 H 0.04 0.78 7.43 -2.38 -0.02 0.77 16 29 H 0.41 10.55 5.58 -92.71 -0.52 10.04 16 30 H 0.03 1.44 8.14 -2.38 -0.02 1.43 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 33 H 0.06 2.92 6.07 -2.39 -0.01 2.91 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 37 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 38 H 0.26 13.11 8.31 -92.70 -0.77 12.34 16 39 H 0.11 0.44 6.12 -2.38 -0.01 0.42 16 40 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.40 11.40 8.12 -92.70 -0.75 10.65 16 Total: -1.00 -69.73 335.89 2.29 -67.43 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -0.24 Total: 21.39 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.65 Total: -1.11 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -4.04 Total: -89.30 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.10 Total: -42.73 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -69.73 2.29 -67.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600000965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.951 kcal (2) G-P(sol) polarization free energy of solvation -69.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds