Wall clock time and date at job start Tue Mar 31 2020 02:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99996 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00318 * 0.02562 * 12 2 1 15 15 C 1.53001 * 109.47377 * 179.97438 * 14 12 2 16 16 N 1.46898 * 109.47045 * 179.97438 * 15 14 12 17 17 C 1.48510 * 110.99922 * 285.38985 * 16 15 14 18 18 C 1.54273 * 104.74040 * 200.66903 * 17 16 15 19 19 H 1.09002 * 113.17197 * 260.64210 * 18 17 16 20 20 C 1.54392 * 108.77176 * 134.58654 * 18 17 16 21 21 O 1.44375 * 104.91810 * 224.67700 * 20 18 17 22 22 C 1.44386 * 105.25504 * 40.76489 * 21 20 18 23 23 C 1.54387 * 104.91794 * 319.23912 * 22 21 20 24 24 H 1.09000 * 113.20038 * 261.36287 * 23 22 21 25 25 C 1.48506 * 110.99922 * 169.99835 * 16 15 14 26 26 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 27 27 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 28 28 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 29 29 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 30 30 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 31 31 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.47054 * 299.99977 * 14 12 2 33 33 H 1.09003 * 109.47164 * 59.99309 * 14 12 2 34 34 H 1.08997 * 109.46529 * 299.99810 * 15 14 12 35 35 H 1.08998 * 109.46873 * 59.99924 * 15 14 12 36 36 H 1.08993 * 110.38608 * 319.48420 * 17 16 15 37 37 H 1.08994 * 110.38070 * 81.86042 * 17 16 15 38 38 H 1.08998 * 110.35187 * 343.54536 * 20 18 17 39 39 H 1.09001 * 110.34648 * 105.71152 * 20 18 17 40 40 H 1.08999 * 110.35121 * 200.37294 * 22 21 20 41 41 H 1.09004 * 110.34816 * 78.09545 * 22 21 20 42 42 H 1.09000 * 110.38658 * 278.14655 * 25 16 15 43 43 H 1.09000 * 110.38419 * 40.51554 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1268 2.8775 1.6728 7 7 3.5540 3.6176 0.6732 8 14 3.4387 3.4163 3.4339 9 1 2.8617 2.4158 4.3673 10 1 4.9014 3.5241 3.6669 11 1 2.8015 4.7371 3.6677 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 6 2.3797 -3.6352 -0.0027 16 7 1.6453 -4.9074 -0.0032 17 6 1.0610 -5.1851 1.3335 18 6 0.8095 -6.7072 1.3435 19 1 -0.2265 -6.9721 1.1319 20 6 1.3097 -7.2847 2.6851 21 8 2.0358 -8.4802 2.3275 22 6 2.7790 -8.1323 1.1395 23 6 1.8050 -7.2814 0.2963 24 1 1.3096 -7.8495 -0.4910 25 6 2.5615 -6.0508 -0.2450 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6083 2.0284 -0.5138 30 1 3.1498 1.1384 -0.5139 31 1 4.0308 4.4436 0.8505 32 1 0.7585 -2.5307 0.8881 33 1 0.7591 -2.5294 -0.8919 34 1 3.0063 -3.5766 -0.8927 35 1 3.0064 -3.5782 0.8873 36 1 1.7645 -4.9115 2.1197 37 1 0.1227 -4.6446 1.4574 38 1 1.9706 -6.5737 3.1809 39 1 0.4661 -7.5302 3.3301 40 1 3.0658 -9.0317 0.5947 41 1 3.6619 -7.5493 1.4019 42 1 2.7552 -6.1632 -1.3118 43 1 3.4958 -5.9102 0.2985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601975004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:20 Heat of formation + Delta-G solvation = -96.243517 kcal Electronic energy + Delta-G solvation = -22462.762382 eV Core-core repulsion = 19120.921741 eV Total energy + Delta-G solvation = -3341.840642 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48475 -40.60947 -38.11422 -36.60265 -34.79316 -34.03162 -31.72371 -31.07399 -29.44488 -27.31689 -27.17673 -25.92441 -24.35713 -23.19372 -21.96726 -20.88094 -19.85959 -18.71945 -18.10189 -17.71677 -17.10031 -16.84006 -16.56075 -16.50245 -16.24139 -15.74076 -15.30419 -15.01259 -14.71887 -14.27223 -14.12791 -13.75765 -13.59323 -13.45686 -13.30368 -13.20009 -13.13673 -12.80412 -12.63853 -12.38177 -12.22873 -12.14841 -11.88456 -11.87225 -11.81705 -11.69040 -11.61226 -10.84497 -10.66914 -10.61561 -9.56212 -9.42250 -8.24316 -6.39531 1.34948 1.37341 1.49143 1.83474 2.27421 2.41108 2.91946 3.01666 3.05281 3.32631 3.64097 3.81568 3.90274 3.99684 4.01490 4.14730 4.19396 4.30110 4.31654 4.41244 4.60846 4.62339 4.67339 4.71676 4.72905 4.75592 4.80387 4.87807 4.92770 4.97911 4.98334 5.03073 5.12327 5.22220 5.23597 5.54891 5.74136 5.78837 5.83236 5.89329 6.04419 6.68153 6.78720 7.26468 7.47590 8.82993 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025581 B = 0.003253 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.278644 B = 8604.433191 C = 9008.145715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.111 4.111 15 C 0.069 3.931 16 N -0.508 5.508 17 C 0.030 3.970 18 C -0.115 4.115 19 H 0.115 0.885 20 C 0.044 3.956 21 O -0.396 6.396 22 C 0.045 3.955 23 C -0.115 4.115 24 H 0.114 0.886 25 C 0.034 3.966 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.023 0.977 30 H -0.004 1.004 31 H 0.267 0.733 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.864 -22.281 0.152 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.151 4.151 15 C -0.060 4.060 16 N -0.231 5.231 17 C -0.097 4.097 18 C -0.134 4.134 19 H 0.134 0.866 20 C -0.033 4.033 21 O -0.315 6.315 22 C -0.032 4.032 23 C -0.134 4.134 24 H 0.133 0.867 25 C -0.094 4.094 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.014 0.986 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.582 -22.235 -0.204 24.213 hybrid contribution 1.374 1.169 1.165 2.147 sum -8.208 -21.066 0.961 22.629 Atomic orbital electron populations 1.21940 0.77721 1.04027 1.02657 1.48206 1.08523 1.06387 1.71119 1.18756 0.91086 0.80544 0.96023 1.21742 1.36809 1.06558 0.93044 0.92848 1.25893 0.94890 0.96436 1.02100 1.70060 1.38950 1.14833 1.33041 0.85343 0.77874 0.78459 0.78974 1.19067 1.20777 1.19276 1.21411 0.87798 0.86788 0.75789 1.90631 1.16790 1.88305 1.52759 1.21472 0.98731 0.88638 1.06250 1.21789 0.94455 0.88795 1.00950 1.65391 1.29132 1.00943 1.27670 1.23367 1.00763 0.95773 0.89829 1.23314 1.01439 0.94142 0.94526 0.86637 1.23723 0.96269 0.86784 0.96495 1.89091 1.62860 1.34506 1.45086 1.23709 0.93785 1.00322 0.85336 1.23302 0.95783 0.95825 0.98499 0.86736 1.23271 0.94130 0.89691 1.02310 0.91080 0.88632 0.91655 0.95857 0.98564 0.92368 0.87298 0.86163 0.91366 0.95754 0.94141 0.88404 0.92625 0.87389 0.87383 0.92526 0.88997 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.24 127.77 1.31 3.60 16 2 N -0.61 -26.06 2.86 -851.14 -2.43 -28.49 16 3 C 0.26 14.12 5.16 85.63 0.44 14.56 16 4 C -0.54 -31.68 9.39 25.60 0.24 -31.44 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.33 5.46 84.66 0.46 0.79 16 7 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 8 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 C 0.49 20.48 7.67 87.66 0.67 21.15 16 13 O -0.60 -31.54 15.56 -3.05 -0.05 -31.59 16 14 C -0.11 -3.03 4.37 29.85 0.13 -2.90 16 15 C 0.07 1.89 4.12 86.30 0.36 2.24 16 16 N -0.51 -10.55 5.34 -882.28 -4.71 -15.26 16 17 C 0.03 0.53 5.46 86.42 0.47 1.01 16 18 C -0.12 -1.66 4.21 -9.04 -0.04 -1.70 16 19 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 20 C 0.04 0.69 7.17 72.45 0.52 1.21 16 21 O -0.40 -7.76 11.65 -148.98 -1.74 -9.50 16 22 C 0.05 0.70 7.17 72.45 0.52 1.22 16 23 C -0.11 -1.67 4.21 -9.04 -0.04 -1.71 16 24 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 25 C 0.03 0.61 6.00 86.42 0.52 1.13 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 28 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 29 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 30 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.11 2.48 6.72 -2.38 -0.02 2.47 16 33 H 0.12 2.71 8.11 -2.39 -0.02 2.69 16 34 H 0.07 2.05 8.04 -2.39 -0.02 2.04 16 35 H 0.02 0.77 7.72 -2.39 -0.02 0.75 16 36 H 0.04 0.81 6.74 -2.39 -0.02 0.79 16 37 H 0.10 1.48 7.83 -2.39 -0.02 1.46 16 38 H 0.06 0.93 7.14 -2.39 -0.02 0.91 16 39 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 0.93 7.14 -2.38 -0.02 0.91 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.04 0.82 6.99 -2.39 -0.02 0.81 16 Total: -1.00 -75.64 341.59 -0.07 -75.71 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.98 Total: 9.26 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.56 Total: 9.16 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -6.85 Total: -100.22 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -1.78 Total: -41.08 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -75.64 -0.07 -75.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601975004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.537 kcal (2) G-P(sol) polarization free energy of solvation -75.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds