Wall clock time and date at job start Tue Mar 31 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99624 * 2 1 4 4 C 1.50696 * 112.85254 * 67.22988 * 3 2 1 5 5 O 1.21282 * 119.99990 * 201.96537 * 4 3 2 6 6 N 1.34780 * 120.00055 * 21.95997 * 4 3 2 7 7 C 1.46501 * 119.99913 * 174.77724 * 6 4 3 8 8 C 1.53033 * 109.45923 * 275.06993 * 7 6 4 9 9 C 1.53198 * 109.31154 * 178.61743 * 8 7 6 10 10 N 1.46921 * 108.77729 * 54.63329 * 9 8 7 11 11 C 1.36933 * 120.63146 * 126.37041 * 10 9 8 12 12 H 1.08001 * 120.00249 * 327.31972 * 11 10 9 13 13 C 1.38810 * 120.00164 * 147.32183 * 11 10 9 14 14 N 1.31620 * 119.99828 * 350.27836 * 13 11 10 15 15 Si 1.86804 * 120.00175 * 170.28261 * 13 11 10 16 16 H 1.48493 * 109.47187 * 59.99670 * 15 13 11 17 17 H 1.48501 * 109.47153 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46713 * 299.99473 * 15 13 11 19 19 C 1.46925 * 118.73889 * 306.39430 * 10 9 8 20 20 C 1.53040 * 109.45425 * 155.00187 * 7 6 4 21 21 C 1.53787 * 113.61672 * 296.03028 * 3 2 1 22 22 C 1.53780 * 87.17329 * 270.84606 * 21 3 2 23 23 C 1.53787 * 113.61354 * 198.53458 * 3 2 1 24 24 H 1.08993 * 109.47274 * 185.49567 * 1 2 3 25 25 H 1.09001 * 109.47412 * 305.50086 * 1 2 3 26 26 H 1.09010 * 109.46932 * 65.50096 * 1 2 3 27 27 H 0.96999 * 119.99880 * 354.77865 * 6 4 3 28 28 H 1.09000 * 109.46196 * 35.02883 * 7 6 4 29 29 H 1.08996 * 109.50217 * 298.56623 * 8 7 6 30 30 H 1.09001 * 109.50163 * 58.66864 * 8 7 6 31 31 H 1.09006 * 109.58814 * 294.84722 * 9 8 7 32 32 H 1.09002 * 109.70521 * 174.49230 * 9 8 7 33 33 H 0.97005 * 119.99968 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.59012 * 293.82228 * 19 10 9 35 35 H 1.09007 * 109.70365 * 173.46095 * 19 10 9 36 36 H 1.08991 * 109.49868 * 301.33522 * 20 7 6 37 37 H 1.08997 * 109.49683 * 61.44130 * 20 7 6 38 38 H 1.09000 * 113.60992 * 25.43182 * 21 3 2 39 39 H 1.09001 * 113.61518 * 156.25692 * 21 3 2 40 40 H 1.09000 * 113.61477 * 89.15357 * 22 21 3 41 41 H 1.08999 * 113.61580 * 220.06041 * 22 21 3 42 42 H 1.09000 * 113.61462 * 203.66548 * 23 3 2 43 43 H 1.08998 * 113.60890 * 334.48705 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7572 2.0587 1.2804 5 8 1.8232 3.2697 1.2948 6 7 1.4574 1.3867 2.4097 7 6 1.3241 2.1080 3.6778 8 6 2.7046 2.2756 4.3165 9 6 2.5656 3.0602 5.6250 10 7 1.5830 2.3818 6.4811 11 6 1.9025 2.0279 7.7647 12 1 2.9148 1.7425 8.0101 13 6 0.9253 2.0359 8.7505 14 7 -0.2553 2.5622 8.5026 15 14 1.2859 1.2998 10.4291 16 1 2.4276 2.0183 11.0498 17 1 0.0875 1.4331 11.2959 18 1 1.6293 -0.1369 10.2761 19 6 0.2512 2.0900 5.9335 20 6 0.4162 1.3162 4.6216 21 6 1.6958 2.1198 -1.2661 22 6 2.9599 1.5011 -1.8858 23 6 3.4812 1.3249 -0.4479 24 1 -0.3633 -1.0229 0.0984 25 1 -0.3634 0.5968 0.8366 26 1 -0.3633 0.4262 -0.9352 27 1 1.3299 0.4255 2.3826 28 1 0.8881 3.0898 3.4931 29 1 3.1310 1.2943 4.5244 30 1 3.3578 2.8194 3.6340 31 1 2.2250 4.0730 5.4094 32 1 3.5286 3.0993 6.1341 33 1 -0.9381 2.5682 9.1916 34 1 -0.2782 3.0235 5.7430 35 1 -0.3144 1.4875 6.6444 36 1 -0.5595 1.1770 4.1562 37 1 0.8641 0.3439 4.8266 38 1 0.7735 1.8172 -1.7620 39 1 1.7639 3.1978 -1.1201 40 1 2.7767 0.5588 -2.4023 41 1 3.5439 2.2040 -2.4799 42 1 4.0388 2.1856 -0.0785 43 1 4.0006 0.3811 -0.2820 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611614986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:10 Heat of formation + Delta-G solvation = -40.217723 kcal Electronic energy + Delta-G solvation = -23295.529521 eV Core-core repulsion = 19956.118340 eV Total energy + Delta-G solvation = -3339.411181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.88779 -38.56295 -37.13733 -35.93194 -34.28075 -32.08438 -30.14881 -29.46496 -27.63509 -26.27900 -25.64251 -24.66131 -22.32493 -22.06248 -20.59023 -19.70898 -19.25909 -17.96672 -16.75100 -16.40860 -15.69301 -15.53430 -15.05472 -14.73674 -14.65798 -14.32557 -13.98793 -13.65221 -13.52009 -12.99406 -12.72817 -12.49384 -12.38995 -12.12754 -11.84910 -11.58181 -11.45959 -11.13086 -11.04739 -10.97478 -10.82249 -10.74457 -10.46836 -10.30268 -10.26285 -10.04042 -9.84888 -9.62189 -9.17167 -8.69366 -8.47078 -6.61120 -5.79487 -3.28390 2.61497 3.18816 3.37199 3.40487 3.43058 3.44044 4.23148 4.40915 4.48302 4.55275 4.66467 5.02334 5.11779 5.15091 5.34990 5.39916 5.43446 5.48825 5.51236 5.55306 5.59804 5.66372 5.70141 5.78594 5.88218 6.02380 6.08415 6.27691 6.34981 6.53199 6.54480 6.59689 6.73112 6.80718 6.94662 7.00390 7.32868 7.61776 7.74278 7.79275 8.35146 8.48006 9.21959 9.82702 10.42215 11.29141 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037102 B = 0.003696 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.491761 B = 7573.654982 C = 7804.007921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.356 6.356 3 C 0.065 3.935 4 C 0.502 3.498 5 O -0.538 6.538 6 N -0.716 5.716 7 C 0.147 3.853 8 C -0.138 4.138 9 C 0.148 3.852 10 N -0.592 5.592 11 C -0.255 4.255 12 H 0.063 0.937 13 C 0.006 3.994 14 N -0.905 5.905 15 Si 0.906 3.094 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.177 3.823 20 C -0.147 4.147 21 C -0.147 4.147 22 C -0.133 4.133 23 C -0.110 4.110 24 H 0.093 0.907 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.399 0.601 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.020 0.980 32 H 0.056 0.944 33 H 0.255 0.745 34 H 0.020 0.980 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -5.195 -19.214 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.275 6.275 3 C 0.022 3.978 4 C 0.287 3.713 5 O -0.415 6.415 6 N -0.366 5.366 7 C 0.044 3.956 8 C -0.179 4.179 9 C 0.021 3.979 10 N -0.315 5.315 11 C -0.385 4.385 12 H 0.081 0.919 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.735 3.265 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.210 1.210 19 C 0.050 3.950 20 C -0.187 4.187 21 C -0.185 4.185 22 C -0.170 4.170 23 C -0.147 4.147 24 H 0.112 0.888 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.234 0.766 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.499 -4.472 -19.037 19.714 hybrid contribution -0.227 -0.691 0.938 1.187 sum 2.272 -5.163 -18.099 18.958 Atomic orbital electron populations 1.22918 0.80506 1.03316 1.00937 1.87921 1.20197 1.24656 1.94692 1.22965 0.97961 0.84344 0.92522 1.20871 0.76822 0.88206 0.85440 1.90695 1.51512 1.13525 1.85783 1.46445 1.70109 1.11765 1.08279 1.21090 0.96886 0.96394 0.81242 1.22375 0.95814 1.01192 0.98469 1.20883 0.94012 0.93401 0.89617 1.44013 1.10450 1.66422 1.10614 1.19131 0.95875 1.39113 0.84342 0.91892 1.25208 0.97113 0.99252 0.97731 1.69956 1.04705 1.46712 1.33564 0.86331 0.77156 0.79122 0.83864 1.20828 1.21596 1.20965 1.20730 0.87560 0.96560 0.90140 1.22548 0.97399 1.00116 0.98602 1.23425 0.99141 1.01416 0.94527 1.22807 0.96826 1.01352 0.96010 1.22948 0.92065 1.03782 0.95949 0.88831 0.93244 0.93482 0.76594 0.90020 0.92290 0.92949 0.96227 0.92535 0.93506 0.96141 0.89083 0.92907 0.92197 0.90623 0.87687 0.89570 0.90670 0.88093 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.29 101.05 1.04 1.22 16 2 O -0.36 -3.95 9.80 -35.23 -0.35 -4.30 16 3 C 0.07 0.77 1.17 -90.95 -0.11 0.67 16 4 C 0.50 7.63 6.36 -10.99 -0.07 7.56 16 5 O -0.54 -9.96 15.73 5.56 0.09 -9.88 16 6 N -0.72 -10.76 4.45 -53.77 -0.24 -11.00 16 7 C 0.15 2.64 2.46 -67.89 -0.17 2.47 16 8 C -0.14 -2.59 5.65 -26.61 -0.15 -2.74 16 9 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 10 N -0.59 -14.95 2.98 -172.31 -0.51 -15.46 16 11 C -0.25 -7.00 9.57 -15.06 -0.14 -7.15 16 12 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 13 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16 14 N -0.91 -26.12 11.10 55.49 0.62 -25.51 16 15 Si 0.91 21.58 29.56 -169.99 -5.03 16.56 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.18 4.18 5.24 -3.71 -0.02 4.17 16 20 C -0.15 -2.74 5.55 -26.61 -0.15 -2.89 16 21 C -0.15 -1.51 7.09 -25.92 -0.18 -1.70 16 22 C -0.13 -1.14 8.03 -25.83 -0.21 -1.34 16 23 C -0.11 -1.12 7.47 -25.82 -0.19 -1.32 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.50 6.82 -51.93 -0.35 0.15 16 26 H 0.05 0.38 6.80 -51.92 -0.35 0.02 16 27 H 0.40 5.31 7.43 -40.82 -0.30 5.01 16 28 H 0.08 1.64 7.51 -51.93 -0.39 1.25 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 33 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 2.39 6.18 -51.92 -0.32 2.07 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.69 6.72 -51.93 -0.35 0.34 16 39 H 0.10 1.21 7.41 -51.93 -0.38 0.82 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -30.80 337.87 -7.85 -38.65 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.06 Total: 3.61 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.46 Total: 2.22 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.14 Total: -51.97 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.26 Total: -14.17 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.80 -7.85 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611614986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.566 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds