Wall clock time and date at job start Tue Mar 31 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99624 * 2 1 4 4 C 1.50696 * 112.85254 * 67.22988 * 3 2 1 5 5 O 1.21282 * 119.99990 * 201.96537 * 4 3 2 6 6 N 1.34780 * 120.00055 * 21.95997 * 4 3 2 7 7 C 1.46501 * 119.99913 * 174.77724 * 6 4 3 8 8 C 1.53033 * 109.45923 * 275.06993 * 7 6 4 9 9 C 1.53198 * 109.31154 * 178.61743 * 8 7 6 10 10 N 1.46921 * 108.77729 * 54.63329 * 9 8 7 11 11 C 1.36933 * 120.63146 * 126.37041 * 10 9 8 12 12 H 1.08001 * 120.00249 * 327.31972 * 11 10 9 13 13 C 1.38810 * 120.00164 * 147.32183 * 11 10 9 14 14 N 1.31620 * 119.99828 * 350.27836 * 13 11 10 15 15 Si 1.86804 * 120.00175 * 170.28261 * 13 11 10 16 16 H 1.48493 * 109.47187 * 59.99670 * 15 13 11 17 17 H 1.48501 * 109.47153 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46713 * 299.99473 * 15 13 11 19 19 C 1.46925 * 118.73889 * 306.39430 * 10 9 8 20 20 C 1.53040 * 109.45425 * 155.00187 * 7 6 4 21 21 C 1.53787 * 113.61672 * 296.03028 * 3 2 1 22 22 C 1.53780 * 87.17329 * 270.84606 * 21 3 2 23 23 C 1.53787 * 113.61354 * 198.53458 * 3 2 1 24 24 H 1.08993 * 109.47274 * 185.49567 * 1 2 3 25 25 H 1.09001 * 109.47412 * 305.50086 * 1 2 3 26 26 H 1.09010 * 109.46932 * 65.50096 * 1 2 3 27 27 H 0.96999 * 119.99880 * 354.77865 * 6 4 3 28 28 H 1.09000 * 109.46196 * 35.02883 * 7 6 4 29 29 H 1.08996 * 109.50217 * 298.56623 * 8 7 6 30 30 H 1.09001 * 109.50163 * 58.66864 * 8 7 6 31 31 H 1.09006 * 109.58814 * 294.84722 * 9 8 7 32 32 H 1.09002 * 109.70521 * 174.49230 * 9 8 7 33 33 H 0.97005 * 119.99968 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.59012 * 293.82228 * 19 10 9 35 35 H 1.09007 * 109.70365 * 173.46095 * 19 10 9 36 36 H 1.08991 * 109.49868 * 301.33522 * 20 7 6 37 37 H 1.08997 * 109.49683 * 61.44130 * 20 7 6 38 38 H 1.09000 * 113.60992 * 25.43182 * 21 3 2 39 39 H 1.09001 * 113.61518 * 156.25692 * 21 3 2 40 40 H 1.09000 * 113.61477 * 89.15357 * 22 21 3 41 41 H 1.08999 * 113.61580 * 220.06041 * 22 21 3 42 42 H 1.09000 * 113.61462 * 203.66548 * 23 3 2 43 43 H 1.08998 * 113.60890 * 334.48705 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7572 2.0587 1.2804 5 8 1.8232 3.2697 1.2948 6 7 1.4574 1.3867 2.4097 7 6 1.3241 2.1080 3.6778 8 6 2.7046 2.2756 4.3165 9 6 2.5656 3.0602 5.6250 10 7 1.5830 2.3818 6.4811 11 6 1.9025 2.0279 7.7647 12 1 2.9148 1.7425 8.0101 13 6 0.9253 2.0359 8.7505 14 7 -0.2553 2.5622 8.5026 15 14 1.2859 1.2998 10.4291 16 1 2.4276 2.0183 11.0498 17 1 0.0875 1.4331 11.2959 18 1 1.6293 -0.1369 10.2761 19 6 0.2512 2.0900 5.9335 20 6 0.4162 1.3162 4.6216 21 6 1.6958 2.1198 -1.2661 22 6 2.9599 1.5011 -1.8858 23 6 3.4812 1.3249 -0.4479 24 1 -0.3633 -1.0229 0.0984 25 1 -0.3634 0.5968 0.8366 26 1 -0.3633 0.4262 -0.9352 27 1 1.3299 0.4255 2.3826 28 1 0.8881 3.0898 3.4931 29 1 3.1310 1.2943 4.5244 30 1 3.3578 2.8194 3.6340 31 1 2.2250 4.0730 5.4094 32 1 3.5286 3.0993 6.1341 33 1 -0.9381 2.5682 9.1916 34 1 -0.2782 3.0235 5.7430 35 1 -0.3144 1.4875 6.6444 36 1 -0.5595 1.1770 4.1562 37 1 0.8641 0.3439 4.8266 38 1 0.7735 1.8172 -1.7620 39 1 1.7639 3.1978 -1.1201 40 1 2.7767 0.5588 -2.4023 41 1 3.5439 2.2040 -2.4799 42 1 4.0388 2.1856 -0.0785 43 1 4.0006 0.3811 -0.2820 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611614986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:10 Heat of formation + Delta-G solvation = -60.227578 kcal Electronic energy + Delta-G solvation = -23296.397214 eV Core-core repulsion = 19956.118340 eV Total energy + Delta-G solvation = -3340.278873 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91794 -39.86343 -38.62006 -36.85042 -35.83178 -33.90174 -31.85557 -31.25427 -28.46893 -27.46584 -26.62895 -26.11060 -24.00689 -23.68965 -21.81619 -21.17581 -20.35930 -19.26005 -18.52393 -17.54287 -16.91865 -16.63873 -16.47380 -16.07729 -15.81323 -15.51622 -15.37630 -15.07829 -14.97535 -14.71070 -14.33223 -14.14752 -13.35977 -13.25797 -12.96993 -12.89998 -12.73753 -12.64073 -12.57570 -12.37995 -12.24271 -12.05331 -11.92034 -11.87712 -11.74219 -11.61659 -11.38703 -11.12738 -10.58065 -10.30394 -10.06288 -8.65679 -7.88931 -5.41921 1.43090 1.48159 1.49802 1.56889 2.08158 2.47467 2.50200 3.28241 3.40746 3.54779 3.61234 3.67815 3.78619 3.86323 4.00763 4.27995 4.28900 4.41258 4.43124 4.44577 4.60951 4.66822 4.74941 4.78224 4.81964 4.83200 4.95117 4.96316 4.99726 5.00878 5.05145 5.10765 5.25834 5.31966 5.43687 5.47813 5.62541 5.68276 5.91805 6.39898 6.54120 7.13962 7.14935 7.80775 8.36106 9.17636 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037102 B = 0.003696 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.491761 B = 7573.654982 C = 7804.007921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.358 6.358 3 C 0.065 3.935 4 C 0.500 3.500 5 O -0.575 6.575 6 N -0.707 5.707 7 C 0.158 3.842 8 C -0.123 4.123 9 C 0.146 3.854 10 N -0.609 5.609 11 C -0.269 4.269 12 H 0.066 0.934 13 C -0.045 4.045 14 N -0.936 5.936 15 Si 0.972 3.028 16 H -0.277 1.277 17 H -0.293 1.293 18 H -0.274 1.274 19 C 0.182 3.818 20 C -0.129 4.129 21 C -0.148 4.148 22 C -0.117 4.117 23 C -0.112 4.112 24 H 0.115 0.885 25 H 0.035 0.965 26 H 0.059 0.941 27 H 0.411 0.589 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.007 0.993 32 H 0.059 0.941 33 H 0.252 0.748 34 H -0.006 1.006 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -7.011 -20.788 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.276 6.276 3 C 0.021 3.979 4 C 0.286 3.714 5 O -0.455 6.455 6 N -0.357 5.357 7 C 0.054 3.946 8 C -0.163 4.163 9 C 0.019 3.981 10 N -0.333 5.333 11 C -0.399 4.399 12 H 0.084 0.916 13 C -0.241 4.241 14 N -0.581 5.581 15 Si 0.800 3.200 16 H -0.202 1.202 17 H -0.219 1.219 18 H -0.200 1.200 19 C 0.056 3.944 20 C -0.169 4.169 21 C -0.186 4.186 22 C -0.154 4.154 23 C -0.150 4.150 24 H 0.133 0.867 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.248 0.752 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.012 0.988 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.302 -6.319 -20.645 21.842 hybrid contribution -0.491 -0.076 1.406 1.491 sum 2.811 -6.394 -19.239 20.468 Atomic orbital electron populations 1.23104 0.79516 1.04607 1.01041 1.87933 1.21262 1.23834 1.94565 1.23026 0.99365 0.84709 0.90772 1.21601 0.75494 0.87966 0.86322 1.90679 1.52998 1.15356 1.86437 1.46231 1.70083 1.12175 1.07248 1.20706 0.95992 0.95517 0.82429 1.22173 0.96464 1.00925 0.96767 1.20962 0.93273 0.93095 0.90734 1.44262 1.11249 1.67058 1.10691 1.19473 0.96107 1.38885 0.85484 0.91639 1.25980 0.96952 0.99909 1.01265 1.70129 1.05507 1.48051 1.34439 0.85279 0.76761 0.78617 0.79360 1.20244 1.21924 1.19993 1.20526 0.86619 0.95449 0.91812 1.22269 0.98971 0.99424 0.96186 1.23430 1.00861 1.00368 0.93941 1.22780 0.95414 1.02109 0.95116 1.23012 0.90961 1.03966 0.97062 0.86674 0.94598 0.92255 0.75206 0.92390 0.91625 0.92220 0.97494 0.92259 0.93938 0.98775 0.91871 0.90708 0.91377 0.89322 0.89289 0.88172 0.89219 0.88950 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 10.29 113.37 1.17 1.37 16 2 O -0.36 -6.94 9.80 -148.98 -1.46 -8.40 16 3 C 0.06 1.40 1.17 -11.01 -0.01 1.39 16 4 C 0.50 14.69 6.36 87.66 0.56 15.25 16 5 O -0.57 -21.29 15.73 -3.04 -0.05 -21.34 16 6 N -0.71 -20.30 4.45 -442.41 -1.97 -22.27 16 7 C 0.16 5.61 2.46 45.02 0.11 5.72 16 8 C -0.12 -4.54 5.65 30.67 0.17 -4.37 16 9 C 0.15 6.44 6.52 86.37 0.56 7.00 16 10 N -0.61 -31.25 2.98 -699.06 -2.08 -33.33 16 11 C -0.27 -14.93 9.57 84.03 0.80 -14.12 16 12 H 0.07 3.52 7.85 -2.91 -0.02 3.50 16 13 C -0.05 -2.53 5.06 84.86 0.43 -2.10 16 14 N -0.94 -55.30 11.10 21.65 0.24 -55.06 16 15 Si 0.97 44.57 29.56 68.60 2.03 46.60 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 C 0.18 8.85 5.24 86.37 0.45 9.31 16 20 C -0.13 -4.75 5.55 30.68 0.17 -4.58 16 21 C -0.15 -2.75 7.09 31.12 0.22 -2.53 16 22 C -0.12 -1.66 8.03 31.18 0.25 -1.41 16 23 C -0.11 -2.05 7.47 31.18 0.23 -1.82 16 24 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.04 0.66 6.82 -2.39 -0.02 0.64 16 26 H 0.06 0.78 6.80 -2.38 -0.02 0.77 16 27 H 0.41 10.05 7.43 -92.71 -0.69 9.36 16 28 H 0.06 2.37 7.51 -2.39 -0.02 2.35 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 33 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 34 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.06 3.42 6.18 -2.38 -0.01 3.40 16 36 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.09 1.39 6.72 -2.39 -0.02 1.38 16 39 H 0.09 1.97 7.41 -2.39 -0.02 1.95 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.85 8.10 -2.39 -0.02 1.83 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -67.09 337.87 2.13 -64.96 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.31 Total: 19.74 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 5.12 Total: 9.11 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -3.81 Total: -110.66 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -1.51 Total: -29.75 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -67.09 2.13 -64.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611614986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.730 kcal (2) G-P(sol) polarization free energy of solvation -67.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds