Wall clock time and date at job start Tue Mar 31 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00118 * 2 1 4 4 H 1.09004 * 112.88163 * 21.83785 * 3 2 1 5 5 C 1.53953 * 113.66381 * 250.49197 * 3 2 1 6 6 C 1.53951 * 87.29470 * 220.79186 * 5 3 2 7 7 H 1.09000 * 113.65861 * 270.17259 * 6 5 3 8 8 N 1.46896 * 113.66334 * 139.20956 * 6 5 3 9 9 C 1.46899 * 111.00338 * 106.00843 * 8 6 5 10 10 C 1.50698 * 109.46987 * 179.97438 * 9 8 6 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 C 1.50703 * 109.47138 * 180.28062 * 13 12 10 15 15 H 1.08001 * 120.00037 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99824 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00502 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99575 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47135 * 90.00187 * 18 16 14 20 20 H 1.48500 * 109.46751 * 210.00163 * 18 16 14 21 21 H 1.48503 * 109.47215 * 329.99996 * 18 16 14 22 22 C 1.52910 * 86.88568 * 24.68575 * 6 5 3 23 23 C 1.52905 * 121.14332 * 209.42358 * 22 6 5 24 24 C 1.53951 * 86.78150 * 209.37959 * 23 22 6 25 25 C 1.52914 * 121.13385 * 100.86021 * 22 6 5 26 26 H 1.09001 * 109.46475 * 179.97438 * 1 2 3 27 27 H 1.08986 * 109.47227 * 300.00033 * 1 2 3 28 28 H 1.08999 * 109.46793 * 60.00797 * 1 2 3 29 29 H 1.09002 * 113.57410 * 106.18948 * 5 3 2 30 30 H 1.08990 * 113.57974 * 335.39512 * 5 3 2 31 31 H 1.00898 * 110.99977 * 229.97085 * 8 6 5 32 32 H 1.09003 * 109.46477 * 60.00383 * 9 8 6 33 33 H 1.08993 * 109.47002 * 300.00709 * 9 8 6 34 34 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 35 35 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 36 36 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 37 37 H 0.96997 * 120.00009 * 180.02562 * 17 16 14 38 38 H 1.08997 * 113.66303 * 323.84935 * 23 22 6 39 39 H 1.08994 * 113.66253 * 94.90792 * 23 22 6 40 40 H 1.09008 * 113.58175 * 270.13149 * 24 23 22 41 41 H 1.09004 * 113.57972 * 139.33810 * 24 23 22 42 42 H 1.09002 * 113.66086 * 265.09468 * 25 22 6 43 43 H 1.08994 * 113.66246 * 36.06126 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3311 2.0718 0.3736 5 6 2.6918 1.6783 -1.3291 6 6 3.8159 2.3132 -0.4904 7 1 3.6461 3.3639 -0.2553 8 7 5.1624 2.0563 -1.0185 9 6 5.7184 3.2599 -1.6510 10 6 7.0974 2.9585 -2.1789 11 8 7.5702 1.8500 -2.0422 12 7 7.8047 3.9205 -2.8039 13 6 9.1476 3.6292 -3.3118 14 6 9.7200 4.8654 -3.9564 15 1 9.1411 5.7767 -3.9852 16 6 10.9822 4.8326 -4.5102 17 7 11.6865 3.7225 -4.4765 18 14 11.6914 6.3647 -5.3097 19 1 12.4284 7.1576 -4.2932 20 1 12.6207 5.9698 -6.3986 21 1 10.5888 7.1847 -5.8730 22 6 3.4041 1.3590 0.6313 23 6 3.5943 1.7370 2.1006 24 6 3.7495 0.2306 2.3780 25 6 4.1949 0.0807 0.9120 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 2.1283 2.4001 -1.9205 30 1 3.0158 0.8151 -1.9103 31 1 5.7752 1.7123 -0.2944 32 1 5.7787 4.0620 -0.9153 33 1 5.0735 3.5689 -2.4735 34 1 7.4264 4.8069 -2.9137 35 1 9.7890 3.3196 -2.4866 36 1 9.0915 2.8280 -4.0488 37 1 12.5747 3.6996 -4.8658 38 1 4.5004 2.3123 2.2905 39 1 2.7079 2.1769 2.5574 40 1 2.8077 -0.2710 2.6011 41 1 4.5342 -0.0016 3.0980 42 1 3.7881 -0.8024 0.4194 43 1 5.2695 0.1903 0.7664 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713488356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:11 Heat of formation + Delta-G solvation = -62.957488 kcal Electronic energy + Delta-G solvation = -22118.231396 eV Core-core repulsion = 18777.834145 eV Total energy + Delta-G solvation = -3340.397251 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.76433 -40.39499 -37.92222 -36.52539 -36.02248 -34.35399 -33.91294 -29.87891 -27.93919 -27.24880 -26.58179 -25.45137 -24.54483 -23.53992 -21.76109 -21.38098 -19.37629 -18.78081 -17.94446 -17.47012 -17.10386 -16.89233 -16.64454 -16.48805 -16.09688 -15.60296 -15.53037 -15.15129 -14.63781 -14.33277 -14.14584 -13.95654 -13.58622 -13.42082 -13.18347 -12.95549 -12.90876 -12.75721 -12.69314 -12.46527 -12.22699 -12.20231 -11.94838 -11.48759 -11.35410 -11.10737 -10.95145 -10.80313 -10.67424 -10.23554 -9.81944 -9.34023 -8.29118 -6.45962 1.42993 1.45671 1.56901 1.80272 2.28890 2.48197 2.84910 3.05689 3.31290 3.46624 3.67241 3.70422 3.85925 3.88580 3.99033 4.02017 4.28405 4.37851 4.47877 4.51870 4.55901 4.60277 4.62541 4.77911 4.87855 4.89250 4.92727 5.07872 5.09203 5.11463 5.18788 5.24387 5.26425 5.48191 5.49367 5.58327 5.70013 5.85158 6.09079 6.33166 6.39580 6.65624 6.95413 7.23769 7.53427 8.83210 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037930 B = 0.002733 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.019195 B =10243.775242 C =10496.241584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.093 3.907 4 H 0.112 0.888 5 C -0.143 4.143 6 C 0.073 3.927 7 H 0.099 0.901 8 N -0.673 5.673 9 C 0.057 3.943 10 C 0.491 3.509 11 O -0.593 6.593 12 N -0.709 5.709 13 C 0.267 3.733 14 C -0.555 4.555 15 H 0.085 0.915 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.255 1.255 22 C -0.103 4.103 23 C -0.121 4.121 24 C -0.132 4.132 25 C -0.111 4.111 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.344 0.656 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.409 0.591 35 H -0.014 1.014 36 H -0.016 1.016 37 H 0.269 0.731 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.574 0.610 12.667 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C 0.035 3.965 4 H 0.130 0.870 5 C -0.181 4.181 6 C -0.036 4.036 7 H 0.117 0.883 8 N -0.307 5.307 9 C -0.075 4.075 10 C 0.278 3.722 11 O -0.474 6.474 12 N -0.360 5.360 13 C 0.144 3.856 14 C -0.593 4.593 15 H 0.103 0.897 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.809 3.191 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.178 1.178 22 C -0.104 4.104 23 C -0.158 4.158 24 C -0.169 4.169 25 C -0.149 4.149 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.165 0.835 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.245 0.755 35 H 0.004 0.996 36 H 0.002 0.998 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.182 -0.683 12.113 27.055 hybrid contribution 0.897 1.102 -0.002 1.421 sum -23.285 0.420 12.112 26.250 Atomic orbital electron populations 1.22941 0.79957 1.03488 1.00789 1.87940 1.20994 1.27758 1.94601 1.23321 0.92241 0.85463 0.95519 0.87039 1.23533 0.96595 1.00877 0.97113 1.22701 0.87815 0.98337 0.94796 0.88317 1.60206 1.03887 1.30101 1.36460 1.21833 0.91038 0.93372 1.01286 1.21491 0.88478 0.84223 0.77977 1.90644 1.72698 1.24559 1.59523 1.46174 1.17763 1.14568 1.57447 1.18509 0.79110 0.95972 0.92009 1.21631 1.01848 0.97337 1.38485 0.89692 1.26100 0.97157 1.00236 0.96286 1.70144 1.12211 1.29146 1.45587 0.85141 0.78352 0.77828 0.77793 1.19526 1.21048 1.17826 1.23094 0.95902 0.97069 0.94286 1.22767 1.02618 0.96584 0.93838 1.22775 1.01600 0.96728 0.95800 1.22338 0.98837 0.96696 0.97015 0.89207 0.92750 0.93415 0.89910 0.91176 0.83497 0.89503 0.86278 0.75550 0.99598 0.99801 0.92268 0.89780 0.89857 0.89943 0.91301 0.92348 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.86 113.37 1.23 1.53 16 2 O -0.39 -7.74 9.91 -148.98 -1.48 -9.21 16 3 C 0.09 1.56 4.18 30.95 0.13 1.69 16 4 H 0.11 1.30 7.90 -2.38 -0.02 1.29 16 5 C -0.14 -2.80 7.72 31.23 0.24 -2.56 16 6 C 0.07 1.43 4.00 45.21 0.18 1.61 16 7 H 0.10 1.49 7.88 -2.39 -0.02 1.47 16 8 N -0.67 -18.21 5.93 -494.09 -2.93 -21.14 16 9 C 0.06 1.50 6.02 85.56 0.52 2.01 16 10 C 0.49 19.78 7.87 87.66 0.69 20.47 16 11 O -0.59 -30.17 16.20 -3.04 -0.05 -30.22 16 12 N -0.71 -29.98 5.55 -466.78 -2.59 -32.57 16 13 C 0.27 14.88 5.43 85.63 0.46 15.34 16 14 C -0.56 -30.37 9.28 25.60 0.24 -30.14 16 15 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.09 5.46 84.66 0.46 0.55 16 17 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 18 Si 0.99 42.43 29.54 68.60 2.03 44.46 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 22 C -0.10 -1.91 1.01 -52.25 -0.05 -1.97 16 23 C -0.12 -1.86 7.85 30.88 0.24 -1.61 16 24 C -0.13 -2.32 8.08 31.23 0.25 -2.06 16 25 C -0.11 -2.51 7.09 30.89 0.22 -2.29 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.34 10.17 6.66 -89.70 -0.60 9.57 16 32 H 0.09 1.76 8.13 -2.39 -0.02 1.74 16 33 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.41 13.98 8.32 -92.71 -0.77 13.20 16 35 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 36 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.06 1.51 7.66 -2.39 -0.02 1.49 16 43 H 0.07 1.82 6.71 -2.39 -0.02 1.80 16 Total: -1.00 -74.12 353.44 -0.29 -74.40 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.37 Total: 28.34 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 4.81 Total: 2.58 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -5.23 Total: -110.35 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -1.53 Total: -39.43 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -74.12 -0.29 -74.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713488356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.446 kcal (2) G-P(sol) polarization free energy of solvation -74.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds