Wall clock time and date at job start Tue Mar 31 2020 02:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99711 * 2 1 4 4 C 1.46900 * 110.99559 * 123.94816 * 2 1 3 5 5 C 1.50701 * 112.85588 * 298.14962 * 4 2 1 6 6 O 1.21280 * 119.99647 * 91.97994 * 5 4 2 7 7 N 1.34766 * 120.00190 * 271.98818 * 5 4 2 8 8 C 1.47030 * 125.64839 * 355.49893 * 7 5 4 9 9 C 1.54373 * 107.28815 * 181.12933 * 8 7 5 10 10 C 1.55149 * 102.92023 * 22.13687 * 9 8 7 11 11 O 1.42904 * 111.00769 * 82.64081 * 10 9 8 12 12 C 1.50702 * 111.00507 * 206.45301 * 10 9 8 13 13 H 1.08003 * 120.00222 * 115.42170 * 12 10 9 14 14 C 1.37876 * 119.99820 * 295.14606 * 12 10 9 15 15 N 1.31508 * 120.00032 * 0.27417 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 180.27371 * 14 12 10 17 17 H 1.48499 * 109.47470 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47095 * 120.00025 * 16 14 12 19 19 H 1.48497 * 109.47071 * 239.99787 * 16 14 12 20 20 C 1.47427 * 125.65310 * 175.53823 * 7 5 4 21 21 C 1.53784 * 113.61516 * 69.35035 * 4 2 1 22 22 C 1.53957 * 87.02100 * 89.22654 * 21 4 2 23 23 C 1.53782 * 87.11105 * 25.36246 * 22 21 4 24 24 H 1.08998 * 109.47474 * 292.68351 * 1 2 3 25 25 H 1.08997 * 109.47049 * 52.68639 * 1 2 3 26 26 H 1.09000 * 109.47051 * 172.68353 * 1 2 3 27 27 H 1.09004 * 109.47049 * 189.55099 * 3 2 1 28 28 H 1.09000 * 109.47380 * 309.54958 * 3 2 1 29 29 H 1.09001 * 109.47336 * 69.55361 * 3 2 1 30 30 H 1.08998 * 109.88393 * 300.51399 * 8 7 5 31 31 H 1.09005 * 109.88215 * 61.67976 * 8 7 5 32 32 H 1.09006 * 110.69914 * 263.79484 * 9 8 7 33 33 H 1.08996 * 110.75278 * 140.50874 * 9 8 7 34 34 H 0.96704 * 113.99896 * 64.57547 * 11 10 9 35 35 H 0.97004 * 119.99740 * 180.02562 * 15 14 12 36 36 H 1.09006 * 110.36214 * 36.99758 * 20 7 5 37 37 H 1.09000 * 110.46166 * 274.72807 * 20 7 5 38 38 H 1.08997 * 113.61505 * 203.74756 * 21 4 2 39 39 H 1.09007 * 113.61027 * 334.65082 * 21 4 2 40 40 H 1.09010 * 113.53592 * 270.81315 * 22 21 4 41 41 H 1.08993 * 113.74359 * 139.94939 * 22 21 4 42 42 H 1.09001 * 113.61615 * 220.09332 * 23 22 21 43 43 H 1.08999 * 113.60723 * 89.18647 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 1.5934 -0.1864 2.4695 6 8 0.5858 -0.5757 3.0209 7 7 2.3536 0.7644 3.0477 8 6 3.6412 1.2590 2.5388 9 6 4.1541 2.3169 3.5393 10 6 3.4011 1.9525 4.8459 11 8 4.0652 0.8960 5.5423 12 6 3.2396 3.1612 5.7313 13 1 2.2533 3.5461 5.9452 14 6 4.3504 3.7724 6.2729 15 7 5.5513 3.3038 6.0126 16 14 4.1497 5.2661 7.3766 17 1 2.7072 5.5920 7.5111 18 1 4.7181 4.9715 8.7165 19 1 4.8644 6.4226 6.7792 20 6 2.0321 1.4804 4.2958 21 6 1.7522 -2.2803 1.0262 22 6 3.0983 -2.3605 0.2834 23 6 3.4976 -1.0762 1.0291 24 1 -0.3634 0.3963 0.9481 25 1 -0.3633 0.6229 -0.8173 26 1 -0.3633 -1.0193 -0.1309 27 1 3.0717 1.3475 -0.1705 28 1 1.5147 1.9451 -0.7924 29 1 1.7904 1.8393 0.9629 30 1 4.3538 0.4369 2.4718 31 1 3.5024 1.7129 1.5575 32 1 3.8886 3.3209 3.2083 33 1 5.2316 2.2275 3.6773 34 1 4.9472 1.1297 5.8628 35 1 6.3328 3.7336 6.3940 36 1 1.5496 0.8080 5.0052 37 1 1.3904 2.3369 4.0892 38 1 1.7524 -2.7945 1.9872 39 1 0.8941 -2.5402 0.4061 40 1 3.0089 -2.2294 -0.7950 41 1 3.6988 -3.2283 0.5559 42 1 4.0467 -0.3655 0.4115 43 1 3.9760 -1.2608 1.9910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:15 Heat of formation + Delta-G solvation = -41.507543 kcal Electronic energy + Delta-G solvation = -24353.503016 eV Core-core repulsion = 21014.035904 eV Total energy + Delta-G solvation = -3339.467112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84177 -38.18789 -36.87812 -35.00575 -34.35103 -32.21671 -29.90501 -28.82879 -27.62016 -26.61126 -25.30142 -24.84003 -22.88697 -22.42312 -19.94059 -19.55473 -18.32030 -17.41145 -16.90336 -15.93031 -15.54883 -14.99455 -14.86526 -14.66302 -14.55221 -14.03652 -13.90923 -13.32313 -13.12370 -12.60289 -12.36803 -12.27810 -12.05363 -11.84020 -11.78102 -11.74667 -11.58040 -11.35036 -11.25712 -11.06542 -10.84759 -10.66949 -10.53995 -10.48844 -10.17978 -9.99044 -9.64622 -9.44186 -8.73024 -8.28689 -8.15694 -7.98448 -6.33043 -4.40797 2.95423 3.15678 3.25023 3.29171 3.52411 3.85242 4.23334 4.44590 4.72443 4.84754 4.86819 4.97084 5.08887 5.36772 5.44837 5.51834 5.52578 5.61858 5.70327 5.76952 5.79181 5.84017 5.88641 5.93221 5.98643 6.04456 6.06458 6.21454 6.28751 6.33896 6.40176 6.61547 6.84189 6.86751 6.94325 7.00900 7.26036 7.29598 7.69595 7.96951 8.12216 8.59035 8.63391 9.27870 9.39440 10.74590 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029675 B = 0.004946 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.323487 B = 5660.129990 C = 5793.032849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.503 5.503 3 C 0.008 3.992 4 C 0.069 3.931 5 C 0.508 3.492 6 O -0.553 6.553 7 N -0.599 5.599 8 C 0.083 3.917 9 C -0.138 4.138 10 C 0.249 3.751 11 O -0.583 6.583 12 C -0.535 4.535 13 H 0.064 0.936 14 C 0.073 3.927 15 N -0.896 5.896 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.282 1.282 20 C 0.117 3.883 21 C -0.107 4.107 22 C -0.129 4.129 23 C -0.127 4.127 24 H 0.036 0.964 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.383 0.617 35 H 0.268 0.732 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 -5.173 -12.493 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.227 5.227 3 C -0.140 4.140 4 C -0.025 4.025 5 C 0.293 3.707 6 O -0.431 6.431 7 N -0.331 5.331 8 C -0.040 4.040 9 C -0.177 4.177 10 C 0.209 3.791 11 O -0.392 6.392 12 C -0.573 4.573 13 H 0.083 0.917 14 C -0.129 4.129 15 N -0.536 5.536 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.005 4.005 21 C -0.145 4.145 22 C -0.166 4.166 23 C -0.165 4.165 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.234 0.766 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.820 -5.938 -12.775 14.367 hybrid contribution 0.269 1.748 1.509 2.325 sum -2.551 -4.190 -11.266 12.288 Atomic orbital electron populations 1.22430 0.86793 1.02659 1.01015 1.62259 1.08464 1.13980 1.38009 1.22760 1.01191 0.88582 1.01426 1.22509 0.97894 0.95524 0.86540 1.20948 0.83427 0.78926 0.87350 1.90640 1.26671 1.60438 1.65385 1.48716 1.21625 1.37204 1.25567 1.22689 0.84738 0.98233 0.98312 1.23203 1.02022 0.96245 0.96188 1.19580 0.86166 0.85279 0.88108 1.86124 1.35704 1.41070 1.76335 1.21502 0.93716 1.11842 1.30288 0.91739 1.24980 0.94964 0.97369 0.95637 1.69653 0.97887 1.41471 1.44557 0.86364 0.78486 0.81925 0.80221 1.19605 1.20728 1.20801 1.22373 0.98760 0.95013 0.84344 1.22846 0.98537 0.91970 1.01196 1.22767 0.96455 0.97412 0.99991 1.23192 0.93556 0.98327 1.01394 0.94543 0.91311 0.91030 0.90589 0.91184 0.93927 0.91691 0.91989 0.91538 0.89722 0.76647 0.92194 0.91244 0.91348 0.89461 0.90606 0.89467 0.91478 0.90283 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.25 60.07 0.56 0.80 16 2 N -0.50 -6.73 4.81 -235.80 -1.13 -7.86 16 3 C 0.01 0.10 7.77 60.06 0.47 0.57 16 4 C 0.07 1.02 0.23 -131.94 -0.03 0.99 16 5 C 0.51 9.75 5.19 -10.99 -0.06 9.69 16 6 O -0.55 -12.42 16.36 5.56 0.09 -12.32 16 7 N -0.60 -11.82 2.75 -170.48 -0.47 -12.29 16 8 C 0.08 1.46 4.90 -3.03 -0.01 1.45 16 9 C -0.14 -2.90 5.52 -24.87 -0.14 -3.03 16 10 C 0.25 5.96 0.88 -89.63 -0.08 5.88 16 11 O -0.58 -14.82 13.17 -35.23 -0.46 -15.29 16 12 C -0.54 -13.82 8.25 -34.44 -0.28 -14.10 16 13 H 0.06 1.67 7.78 -52.48 -0.41 1.27 16 14 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 15 N -0.90 -22.74 10.76 55.43 0.60 -22.15 16 16 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 C 0.12 2.63 6.10 -2.53 -0.02 2.62 16 21 C -0.11 -1.44 6.94 -25.82 -0.18 -1.62 16 22 C -0.13 -1.45 8.00 -25.83 -0.21 -1.66 16 23 C -0.13 -1.66 4.72 -25.92 -0.12 -1.79 16 24 H 0.04 0.57 6.79 -51.93 -0.35 0.22 16 25 H 0.07 0.74 7.99 -51.93 -0.42 0.32 16 26 H 0.07 0.87 6.94 -51.93 -0.36 0.51 16 27 H 0.08 0.89 5.95 -51.93 -0.31 0.58 16 28 H 0.07 0.76 7.98 -51.93 -0.41 0.34 16 29 H 0.04 0.64 5.52 -51.93 -0.29 0.35 16 30 H 0.06 1.10 5.61 -51.93 -0.29 0.81 16 31 H 0.06 0.95 4.36 -51.93 -0.23 0.73 16 32 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 33 H 0.08 1.86 7.69 -51.93 -0.40 1.46 16 34 H 0.38 9.73 7.24 45.56 0.33 10.06 16 35 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 36 H 0.07 1.69 7.99 -51.93 -0.42 1.28 16 37 H 0.07 1.50 8.02 -51.93 -0.42 1.09 16 38 H 0.09 1.26 8.09 -51.93 -0.42 0.84 16 39 H 0.08 0.95 6.95 -51.92 -0.36 0.59 16 40 H 0.09 0.92 8.14 -51.92 -0.42 0.49 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.95 6.79 -51.93 -0.35 0.60 16 43 H 0.09 1.33 6.85 -51.93 -0.36 0.97 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -28.29 322.91 -7.58 -35.88 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.85 Total: 12.63 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.20 Total: 1.56 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -1.01 Total: -42.30 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.37 Total: -27.61 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.29 -7.58 -35.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.632 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds